data_PRDCC_000453
# 
_chem_comp.id                                    PRD_000453 
_chem_comp.name                                  "N-[3-(1H-benzimidazol-1-yl)propanoyl]glycyl-L-alanyl-L-alaninamide" 
_chem_comp.formula                               "C18 H24 N6 O4" 
_chem_comp.formula_weight                        388.421 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
PRD_000453 C1  C1  C 0 1 Y N N 30.771 90.989 45.397 -6.309 -1.736 0.464  EXB 1 C2   polymer 1 1 1  ? ? ? 
PRD_000453 C2  C2  C 0 1 Y N N 31.336 91.325 48.144 -8.597 -1.125 -0.999 EXB 1 C5   polymer 1 1 2  ? ? ? 
PRD_000453 C3  C3  C 0 1 Y N N 30.182 91.873 47.577 -8.345 -2.412 -0.616 EXB 1 C4   polymer 1 1 3  ? ? ? 
PRD_000453 C4  C4  C 0 1 Y N N 29.916 91.708 46.218 -7.206 -2.723 0.114  EXB 1 C3   polymer 1 1 4  ? ? ? 
PRD_000453 C5  C5  C 0 1 Y N N 32.189 90.598 47.318 -7.702 -0.108 -0.655 EXB 1 C6   polymer 1 1 5  ? ? ? 
PRD_000453 C6  C6  C 0 1 N N N 32.545 89.436 42.901 -3.443 0.669  0.030  EXB 1 C11  polymer 1 1 6  ? ? ? 
PRD_000453 C7  C7  C 0 1 N N N 33.307 89.161 44.136 -4.610 0.951  0.979  EXB 1 C10  polymer 1 1 7  ? ? ? 
PRD_000453 N1  N1  N 0 1 Y N N 32.946 89.691 45.454 -5.876 0.769  0.264  EXB 1 N9   polymer 1 1 8  ? ? ? 
PRD_000453 C8  C8  C 0 1 Y N N 31.930 90.441 45.951 -6.549 -0.423 0.083  EXB 1 C1   polymer 1 1 9  ? ? ? 
PRD_000453 C9  C9  C 0 1 Y N N 33.790 89.408 46.463 -6.606 1.742  -0.344 EXB 1 C8   polymer 1 1 10 ? ? ? 
PRD_000453 N2  N2  N 0 1 Y N N 33.345 89.950 47.594 -7.674 1.230  -0.882 EXB 1 N7   polymer 1 1 11 ? ? ? 
PRD_000453 C10 C10 C 0 1 N N N 33.249 89.440 41.746 -2.141 0.856  0.765  EXB 1 C12  polymer 1 1 12 ? ? ? 
PRD_000453 O1  O1  O 0 1 N N N 34.474 89.274 41.764 -2.146 1.184  1.933  EXB 1 O    polymer 1 1 13 ? ? ? 
PRD_000453 N3  N3  N 0 1 N N N 32.582 89.647 40.613 -0.971 0.660  0.125  GLY 2 N    polymer 1 1 14 ? ? ? 
PRD_000453 C11 C11 C 0 1 N N N 33.109 89.358 39.417 0.294  0.843  0.840  GLY 2 CA   polymer 1 1 15 ? ? ? 
PRD_000453 C12 C12 C 0 1 N N N 32.568 88.408 38.631 1.443  0.564  -0.094 GLY 2 C    polymer 1 1 16 ? ? ? 
PRD_000453 O2  O2  O 0 1 N N N 31.585 87.779 39.001 1.227  0.245  -1.244 GLY 2 O    polymer 1 1 17 ? ? ? 
PRD_000453 N4  N4  N 0 1 N N N 33.099 88.169 37.434 2.712  0.670  0.348  ALA 3 N    polymer 1 1 18 ? ? ? 
PRD_000453 C13 C13 C 0 1 N N S 32.217 87.756 36.352 3.829  0.400  -0.561 ALA 3 CA   polymer 1 1 19 ? ? ? 
PRD_000453 C14 C14 C 0 1 N N N 31.902 86.288 36.438 5.037  -0.017 0.239  ALA 3 C    polymer 1 1 20 ? ? ? 
PRD_000453 O3  O3  O 0 1 N N N 32.669 85.527 37.012 4.971  -0.082 1.448  ALA 3 O    polymer 1 1 21 ? ? ? 
PRD_000453 C15 C15 C 0 1 N N N 32.836 88.074 34.991 4.156  1.665  -1.357 ALA 3 CB   polymer 1 1 22 ? ? ? 
PRD_000453 N5  N5  N 0 1 N N N 30.763 85.879 35.865 6.190  -0.318 -0.390 ALA 4 N    polymer 1 1 23 ? ? ? 
PRD_000453 C16 C16 C 0 1 N N S 30.344 84.480 35.863 7.364  -0.723 0.387  ALA 4 CA   polymer 1 1 24 ? ? ? 
PRD_000453 C17 C17 C 0 1 N N N 31.405 83.590 35.286 8.615  -0.414 -0.395 ALA 4 C    polymer 1 1 25 ? ? ? 
PRD_000453 O4  O4  O 0 1 N N N 32.044 83.960 34.308 8.534  0.095  -1.493 ALA 4 O    polymer 1 1 26 ? ? ? 
PRD_000453 C18 C18 C 0 1 N N N 29.094 84.307 35.003 7.296  -2.225 0.667  ALA 4 CB   polymer 1 1 27 ? ? ? 
PRD_000453 N6  N6  N 0 1 N N N 31.590 82.414 35.885 9.824  -0.703 0.126  NH2 5 N    polymer 1 1 28 ? ? ? 
PRD_000453 H1  H1  H 0 1 N N N 30.545 90.855 44.349 -5.427 -1.983 1.035  EXB 1 H2   polymer 1 1 29 ? ? ? 
PRD_000453 H2  H2  H 0 1 N N N 31.559 91.461 49.192 -9.486 -0.894 -1.567 EXB 1 H5   polymer 1 1 30 ? ? ? 
PRD_000453 H3  H3  H 0 1 N N N 29.492 92.428 48.195 -9.039 -3.195 -0.883 EXB 1 H4   polymer 1 1 31 ? ? ? 
PRD_000453 H4  H4  H 0 1 N N N 29.025 92.150 45.796 -7.021 -3.745 0.409  EXB 1 H3   polymer 1 1 32 ? ? ? 
PRD_000453 H5  H5  H 0 1 N N N 31.763 88.668 42.813 -3.511 -0.356 -0.334 EXB 1 H11  polymer 1 1 33 ? ? ? 
PRD_000453 H6  H6  H 0 1 N N N 33.313 88.066 44.246 -4.567 0.263  1.823  EXB 1 H10  polymer 1 1 34 ? ? ? 
PRD_000453 H7  H7  H 0 0 N N N 34.330 89.516 43.941 -4.543 1.977  1.342  EXB 1 H10A polymer 1 1 35 ? ? ? 
PRD_000453 H8  H8  H 0 1 N N N 34.695 88.827 46.369 -6.338 2.788  -0.375 EXB 1 H8   polymer 1 1 36 ? ? ? 
PRD_000453 H9  H9  H 0 1 N N N 32.077 90.425 43.010 -3.486 1.357  -0.814 EXB 1 H9   polymer 1 1 37 ? ? ? 
PRD_000453 H10 H10 H 0 1 N N N 31.659 90.030 40.657 -0.968 0.399  -0.809 GLY 2 H    polymer 1 1 38 ? ? ? 
PRD_000453 H11 H11 H 0 1 N N N 33.094 90.291 38.835 0.362  1.868  1.204  GLY 2 HA2  polymer 1 1 39 ? ? ? 
PRD_000453 H12 H12 H 0 1 N N N 34.151 89.057 39.599 0.337  0.154  1.684  GLY 2 HA3  polymer 1 1 40 ? ? ? 
PRD_000453 H13 H13 H 0 1 N N N 34.082 88.271 37.281 2.886  0.926  1.267  ALA 3 H    polymer 1 1 41 ? ? ? 
PRD_000453 H14 H14 H 0 1 N N N 31.273 88.315 36.432 3.554  -0.401 -1.247 ALA 3 HA   polymer 1 1 42 ? ? ? 
PRD_000453 H15 H15 H 0 1 N N N 32.151 87.753 34.192 4.432  2.465  -0.671 ALA 3 HB1  polymer 1 1 43 ? ? ? 
PRD_000453 H16 H16 H 0 1 N N N 33.010 89.157 34.911 4.988  1.463  -2.033 ALA 3 HB2  polymer 1 1 44 ? ? ? 
PRD_000453 H17 H17 H 0 1 N N N 33.793 87.541 34.890 3.283  1.966  -1.935 ALA 3 HB3  polymer 1 1 45 ? ? ? 
PRD_000453 H18 H18 H 0 1 N N N 30.177 86.557 35.422 6.243  -0.266 -1.358 ALA 4 H    polymer 1 1 46 ? ? ? 
PRD_000453 H19 H19 H 0 1 N N N 30.118 84.157 36.890 7.382  -0.177 1.330  ALA 4 HA   polymer 1 1 47 ? ? ? 
PRD_000453 H20 H20 H 0 1 N N N 28.788 83.251 35.009 7.279  -2.771 -0.276 ALA 4 HB1  polymer 1 1 48 ? ? ? 
PRD_000453 H21 H21 H 0 1 N N N 28.281 84.927 35.409 8.170  -2.527 1.245  ALA 4 HB2  polymer 1 1 49 ? ? ? 
PRD_000453 H22 H22 H 0 1 N N N 29.313 84.620 33.971 6.392  -2.449 1.233  ALA 4 HB3  polymer 1 1 50 ? ? ? 
PRD_000453 H23 H23 H 0 1 N N N 32.281 81.780 35.539 9.889  -1.110 1.004  NH2 5 HN1  polymer 1 1 51 ? ? ? 
PRD_000453 H24 H24 H 0 1 N N N 31.038 82.166 36.681 10.629 -0.504 -0.377 NH2 5 HN2  polymer 1 1 52 ? ? ? 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_000453 C1  C4  DOUB Y N 1  
PRD_000453 C1  C8  SING Y N 2  
PRD_000453 C1  H1  SING N N 3  
PRD_000453 C2  C3  DOUB Y N 4  
PRD_000453 C2  C5  SING Y N 5  
PRD_000453 C2  H2  SING N N 6  
PRD_000453 C3  C4  SING Y N 7  
PRD_000453 C3  H3  SING N N 8  
PRD_000453 C4  H4  SING N N 9  
PRD_000453 C5  C8  DOUB Y N 10 
PRD_000453 C5  N2  SING Y N 11 
PRD_000453 C6  C7  SING N N 12 
PRD_000453 C6  C10 SING N N 13 
PRD_000453 C6  H5  SING N N 14 
PRD_000453 C7  N1  SING N N 15 
PRD_000453 C7  H6  SING N N 16 
PRD_000453 C7  H7  SING N N 17 
PRD_000453 N1  C8  SING Y N 18 
PRD_000453 N1  C9  SING Y N 19 
PRD_000453 C9  N2  DOUB Y N 20 
PRD_000453 C9  H8  SING N N 21 
PRD_000453 C10 O1  DOUB N N 22 
PRD_000453 C6  H9  SING N N 23 
PRD_000453 N3  C11 SING N N 24 
PRD_000453 N3  H10 SING N N 25 
PRD_000453 C11 C12 SING N N 26 
PRD_000453 C11 H11 SING N N 27 
PRD_000453 C11 H12 SING N N 28 
PRD_000453 C12 O2  DOUB N N 29 
PRD_000453 N4  C13 SING N N 30 
PRD_000453 N4  H13 SING N N 31 
PRD_000453 C13 C14 SING N N 32 
PRD_000453 C13 C15 SING N N 33 
PRD_000453 C13 H14 SING N N 34 
PRD_000453 C14 O3  DOUB N N 35 
PRD_000453 C15 H15 SING N N 36 
PRD_000453 C15 H16 SING N N 37 
PRD_000453 C15 H17 SING N N 38 
PRD_000453 N5  C16 SING N N 39 
PRD_000453 N5  H18 SING N N 40 
PRD_000453 C16 C17 SING N N 41 
PRD_000453 C16 C18 SING N N 42 
PRD_000453 C16 H19 SING N N 43 
PRD_000453 C17 O4  DOUB N N 44 
PRD_000453 C18 H20 SING N N 45 
PRD_000453 C18 H21 SING N N 46 
PRD_000453 C18 H22 SING N N 47 
PRD_000453 N6  H23 SING N N 48 
PRD_000453 N6  H24 SING N N 49 
PRD_000453 C10 N3  SING N N 50 
PRD_000453 N6  C17 SING N N 51 
PRD_000453 C12 N4  SING N N 52 
PRD_000453 C14 N5  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_000453 SMILES           ACDLabs              12.01 "O=C(N)C(NC(=O)C(NC(=O)CNC(=O)CCn1c2ccccc2nc1)C)C"                                                                                                                    
PRD_000453 InChI            InChI                1.03  "InChI=1S/C18H24N6O4/c1-11(17(19)27)23-18(28)12(2)22-16(26)9-20-15(25)7-8-24-10-21-13-5-3-4-6-14(13)24/h3-6,10-12H,7-9H2,1-2H3,(H2,19,27)(H,20,25)(H,22,26)(H,23,28)" 
PRD_000453 InChIKey         InChI                1.03  XIYSOGRPNKXLBP-UHFFFAOYSA-N                                                                                                                                           
PRD_000453 SMILES_CANONICAL CACTVS               3.370 "C[C@H](NC(=O)[C@H](C)NC(=O)CNC(=O)CCn1cnc2ccccc12)C(N)=O"                                                                                                            
PRD_000453 SMILES           CACTVS               3.370 "C[CH](NC(=O)[CH](C)NC(=O)CNC(=O)CCn1cnc2ccccc12)C(N)=O"                                                                                                              
PRD_000453 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N)NC(=O)[C@H](C)NC(=O)CNC(=O)CCn1cnc2c1cccc2"                                                                                                           
PRD_000453 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(=O)N)NC(=O)C(C)NC(=O)CNC(=O)CCn1cnc2c1cccc2"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PRD_000453 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-(1H-benzimidazol-1-yl)propanoyl]glycyl-L-alanyl-L-alaninamide"                                
PRD_000453 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[(2S)-2-[2-[3-(benzimidazol-1-yl)propanoylamino]ethanoylamino]propanoyl]amino]propanamide" 
# 
