data_PRDCC_002423
# 
_chem_comp.id                                    PRD_002423 
_chem_comp.name                                  "Phytochelatin 2" 
_chem_comp.formula                               "C18 H29 N5 O10 S2" 
_chem_comp.formula_weight                        539.580 
_chem_comp.pdbx_release_status                   REF_ONLY 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ? 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    ? 
_chem_comp.pdbx_initial_date                     ? 
_chem_comp.pdbx_modified_date                    ? 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   ? 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   ? 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_pcm                              ? 
_chem_comp.pdbx_processing_site                  ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_residue_numbering 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_polymer_type 
_chem_comp_atom.pdbx_ref_id 
_chem_comp_atom.pdbx_component_id 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.pdbx_ordinal 
PRD_002423 N1  N1  N 0 1 N N N 116.688 122.461 104.829 4.113  0.794  -0.135 CYS 1 N   polymer     1 1 Y Y N 1  
PRD_002423 C1  C1  C 0 1 N N R 115.615 121.585 105.258 2.853  0.958  0.596  CYS 1 CA  polymer     1 1 Y N N 2  
PRD_002423 C2  C2  C 0 1 N N N 114.721 122.491 106.068 1.962  1.918  -0.149 CYS 1 C   polymer     1 1 Y N Y 3  
PRD_002423 O1  O1  O 0 1 N N N 113.745 123.050 105.578 2.341  2.415  -1.189 CYS 1 O   polymer     1 1 Y N Y 4  
PRD_002423 C3  C3  C 0 1 N N N 116.231 120.498 106.135 3.143  1.511  1.993  CYS 1 CB  polymer     1 1 N N N 5  
PRD_002423 S1  S1  S 0 1 N N N 115.224 118.986 106.389 4.216  0.356  2.890  CYS 1 SG  polymer     1 1 N N N 6  
PRD_002423 N2  N2  N 0 1 N N N 115.103 122.632 107.335 0.743  2.222  0.339  GLU 2 N   polymer     1 1 Y Y N 7  
PRD_002423 C4  C4  C 0 1 N N S 114.414 123.529 108.251 -0.124 3.155  -0.386 GLU 2 CA  polymer     1 1 Y N N 8  
PRD_002423 C5  C5  C 0 1 N N N 114.730 124.930 107.781 0.226  4.569  0.001  GLU 2 C   polymer     1 1 Y N Y 9  
PRD_002423 O2  O2  O 0 1 N N N 113.911 125.822 108.059 1.108  4.777  0.799  GLU 2 O   polymer     1 1 Y N Y 10 
PRD_002423 C6  C6  C 0 1 N N N 114.972 123.348 109.650 -1.585 2.875  -0.029 GLU 2 CB  polymer     1 1 N N N 11 
PRD_002423 C7  C7  C 0 1 N N N 114.700 121.916 110.103 -1.976 1.484  -0.533 GLU 2 CG  polymer     1 1 N N N 12 
PRD_002423 C8  C8  C 0 1 N N N 115.940 121.409 110.823 -3.415 1.209  -0.182 GLU 2 CD  polymer     1 1 N N N 13 
PRD_002423 O3  O3  O 0 1 N N N 116.065 121.511 112.040 -4.064 2.042  0.413  GLU 2 OE1 polymer     1 1 N N N 14 
PRD_002423 O4  O4  O 0 1 N Y N ?       ?       ?       -0.444 5.598  -0.543 GLU 2 OXT polymer     1 1 Y N Y 15 
PRD_002423 N3  N3  N 0 1 N N N 116.843 120.844 110.027 -3.981 0.036  -0.529 CYS 1 N   polymer     2 2 Y Y N 16 
PRD_002423 C9  C9  C 0 1 N N R 118.106 120.340 110.548 -5.380 -0.233 -0.187 CYS 1 CA  polymer     2 2 Y N N 17 
PRD_002423 C10 C10 C 0 1 N N N 118.863 121.535 111.135 -5.600 -1.721 -0.103 CYS 1 C   polymer     2 2 Y N Y 18 
PRD_002423 O5  O5  O 0 1 N N N 119.568 122.242 110.422 -4.679 -2.483 -0.308 CYS 1 O   polymer     2 2 Y N Y 19 
PRD_002423 C11 C11 C 0 1 N N N 118.874 119.706 109.395 -6.290 0.358  -1.266 CYS 1 CB  polymer     2 2 N N N 20 
PRD_002423 S2  S2  S 0 1 N N N 117.904 118.439 108.496 -6.025 2.149  -1.367 CYS 1 SG  polymer     2 2 N N N 21 
PRD_002423 N4  N4  N 0 1 N N N 118.656 121.763 112.441 -6.821 -2.205 0.200  GLY 2 N   polymer     2 2 Y Y N 22 
PRD_002423 C12 C12 C 0 1 N N N 119.283 122.886 113.165 -7.035 -3.652 0.282  GLY 2 CA  polymer     2 2 Y N N 23 
PRD_002423 C13 C13 C 0 1 N N N 118.905 122.828 114.643 -8.474 -3.928 0.633  GLY 2 C   polymer     2 2 Y N Y 24 
PRD_002423 O6  O6  O 0 1 N N N 119.728 123.299 115.456 -9.242 -3.010 0.799  GLY 2 O   polymer     2 2 Y N Y 25 
PRD_002423 O7  O7  O 0 1 N Y N 117.802 122.317 114.928 -8.903 -5.194 0.763  GLY 2 OXT polymer     2 2 Y N Y 26 
PRD_002423 N5  N5  N 0 1 N N N 115.958 123.177 100.068 9.035  -1.031 -0.687 DGL 3 N   non-polymer 3 3 Y Y N 27 
PRD_002423 C14 C14 C 0 1 N N R 116.553 123.928 101.170 8.064  -2.030 -1.154 DGL 3 CA  non-polymer 3 3 Y N N 28 
PRD_002423 C15 C15 C 0 1 N N N 117.413 125.059 100.620 8.610  -3.413 -0.909 DGL 3 C   non-polymer 3 3 Y N Y 29 
PRD_002423 O8  O8  O 0 1 N N N 117.162 125.466 99.476  9.491  -3.581 -0.100 DGL 3 O   non-polymer 3 3 Y N Y 30 
PRD_002423 C16 C16 C 0 1 N N N 115.456 124.519 102.033 6.749  -1.858 -0.391 DGL 3 CB  non-polymer 3 3 N N N 31 
PRD_002423 C17 C17 C 0 1 N N N 115.237 123.634 103.251 6.132  -0.502 -0.736 DGL 3 CG  non-polymer 3 3 N N N 32 
PRD_002423 C18 C18 C 0 1 N N N 116.565 123.486 103.985 4.837  -0.333 0.015  DGL 3 CD  non-polymer 3 3 N N N 33 
PRD_002423 O9  O9  O 0 1 N N N 117.507 124.223 103.719 4.446  -1.211 0.754  DGL 3 OE1 non-polymer 3 3 N N N 34 
PRD_002423 O10 O10 O 0 1 N Y N ?       ?       ?       8.117  -4.459 -1.591 DGL 3 OXT non-polymer 3 3 Y N Y 35 
PRD_002423 H1  H1  H 0 1 N N N 117.600 122.281 105.198 4.424  1.495  -0.729 CYS 1 H   polymer     1 1 Y Y N 36 
PRD_002423 H2  H2  H 0 1 N N N 115.073 121.146 104.408 2.356  -0.008 0.683  CYS 1 HA  polymer     1 1 Y N N 37 
PRD_002423 H3  H3  H 0 1 N N N 117.181 120.193 105.672 3.641  2.477  1.906  CYS 1 HB2 polymer     1 1 N N N 38 
PRD_002423 H4  H4  H 0 1 N N N 116.429 120.938 107.124 2.206  1.633  2.536  CYS 1 HB3 polymer     1 1 N N N 39 
PRD_002423 H5  H5  H 0 1 N N N 115.995 118.273 107.155 4.384  0.961  4.080  CYS 1 HG  polymer     1 1 N N N 40 
PRD_002423 H6  H6  H 0 1 N N N 115.886 122.106 107.667 0.440  1.824  1.170  GLU 2 H   polymer     1 1 Y Y N 41 
PRD_002423 H7  H7  H 0 1 N N N 113.328 123.354 108.244 0.019  3.026  -1.459 GLU 2 HA  polymer     1 1 Y N N 42 
PRD_002423 H8  H8  H 0 1 N N N 116.056 123.535 109.643 -1.709 2.917  1.053  GLU 2 HB2 polymer     1 1 N N N 43 
PRD_002423 H9  H9  H 0 1 N N N 114.483 124.053 110.338 -2.223 3.624  -0.498 GLU 2 HB3 polymer     1 1 N N N 44 
PRD_002423 H10 H10 H 0 1 N N N 113.838 121.898 110.786 -1.851 1.442  -1.615 GLU 2 HG2 polymer     1 1 N N N 45 
PRD_002423 H11 H11 H 0 1 N N N 114.490 121.281 109.229 -1.337 0.735  -0.065 GLU 2 HG3 polymer     1 1 N N N 46 
PRD_002423 H12 H12 H 0 1 N Y N ?       ?       ?       -0.184 6.487  -0.264 GLU 2 HXT polymer     1 1 Y N Y 47 
PRD_002423 H13 H13 H 0 1 N N N 116.651 120.763 109.049 -3.461 -0.631 -1.005 CYS 1 H   polymer     2 2 Y Y N 48 
PRD_002423 H14 H14 H 0 1 N N N 117.931 119.591 111.334 -5.613 0.224  0.775  CYS 1 HA  polymer     2 2 Y N N 49 
PRD_002423 H15 H15 H 0 1 N N N 119.158 120.498 108.686 -6.057 -0.099 -2.228 CYS 1 HB2 polymer     2 2 N N N 50 
PRD_002423 H16 H16 H 0 1 N N N 119.781 119.232 109.798 -7.331 0.158  -1.012 CYS 1 HB3 polymer     2 2 N N N 51 
PRD_002423 H17 H17 H 0 1 N N N 118.745 118.052 107.583 -6.876 2.527  -2.338 CYS 1 HG  polymer     2 2 N N N 52 
PRD_002423 H18 H18 H 0 1 N N N 118.051 121.146 112.945 -7.557 -1.596 0.364  GLY 2 H   polymer     2 2 Y Y N 53 
PRD_002423 H19 H19 H 0 1 N N N 120.376 122.819 113.065 -6.802 -4.109 -0.680 GLY 2 HA2 polymer     2 2 Y N N 54 
PRD_002423 H20 H20 H 0 1 N N N 118.933 123.837 112.736 -6.386 -4.073 1.050  GLY 2 HA3 polymer     2 2 Y N N 55 
PRD_002423 H21 H21 H 0 1 N Y N 117.676 122.338 115.869 -9.834 -5.320 0.989  GLY 2 HXT polymer     2 2 Y N Y 56 
PRD_002423 H22 H22 H 0 1 N N N 115.395 122.436 100.434 9.217  -1.137 0.300  DGL 3 H   non-polymer 3 3 Y Y N 57 
PRD_002423 H23 H23 H 0 1 N Y N 115.388 123.788 99.518  9.890  -1.081 -1.220 DGL 3 H2  non-polymer 3 3 Y Y N 58 
PRD_002423 H24 H24 H 0 1 N N N 117.179 123.264 101.784 7.886  -1.892 -2.220 DGL 3 HA  non-polymer 3 3 Y N N 59 
PRD_002423 H25 H25 H 0 1 N N N 115.750 125.527 102.360 6.059  -2.654 -0.673 DGL 3 HB2 non-polymer 3 3 N N N 60 
PRD_002423 H26 H26 H 0 1 N N N 114.524 124.579 101.451 6.942  -1.907 0.681  DGL 3 HB3 non-polymer 3 3 N N N 61 
PRD_002423 H27 H27 H 0 1 N N N 114.494 124.097 103.917 6.822  0.294  -0.454 DGL 3 HG2 non-polymer 3 3 N N N 62 
PRD_002423 H28 H28 H 0 1 N N N 114.877 122.645 102.931 5.939  -0.453 -1.808 DGL 3 HG3 non-polymer 3 3 N N N 63 
PRD_002423 H29 H29 H 0 1 N Y N ?       ?       ?       8.499  -5.327 -1.400 DGL 3 HXT non-polymer 3 3 Y N Y 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PRD_002423 N1  C1  SING N N 1  
PRD_002423 N1  H1  SING N N 2  
PRD_002423 C1  C2  SING N N 3  
PRD_002423 C1  C3  SING N N 4  
PRD_002423 C1  H2  SING N N 5  
PRD_002423 C2  O1  DOUB N N 6  
PRD_002423 C3  S1  SING N N 7  
PRD_002423 C3  H3  SING N N 8  
PRD_002423 C3  H4  SING N N 9  
PRD_002423 S1  H5  SING N N 10 
PRD_002423 N2  C4  SING N N 11 
PRD_002423 N2  H6  SING N N 12 
PRD_002423 C4  C5  SING N N 13 
PRD_002423 C4  C6  SING N N 14 
PRD_002423 C4  H7  SING N N 15 
PRD_002423 C5  O2  DOUB N N 16 
PRD_002423 C5  O4  SING N N 17 
PRD_002423 C6  C7  SING N N 18 
PRD_002423 C6  H8  SING N N 19 
PRD_002423 C6  H9  SING N N 20 
PRD_002423 C7  C8  SING N N 21 
PRD_002423 C7  H10 SING N N 22 
PRD_002423 C7  H11 SING N N 23 
PRD_002423 C8  O3  DOUB N N 24 
PRD_002423 O4  H12 SING N N 25 
PRD_002423 N3  C9  SING N N 26 
PRD_002423 N3  H13 SING N N 27 
PRD_002423 C9  C10 SING N N 28 
PRD_002423 C9  C11 SING N N 29 
PRD_002423 C9  H14 SING N N 30 
PRD_002423 C10 O5  DOUB N N 31 
PRD_002423 C11 S2  SING N N 32 
PRD_002423 C11 H15 SING N N 33 
PRD_002423 C11 H16 SING N N 34 
PRD_002423 S2  H17 SING N N 35 
PRD_002423 N4  C12 SING N N 36 
PRD_002423 N4  H18 SING N N 37 
PRD_002423 C12 C13 SING N N 38 
PRD_002423 C12 H19 SING N N 39 
PRD_002423 C12 H20 SING N N 40 
PRD_002423 C13 O6  DOUB N N 41 
PRD_002423 C13 O7  SING N N 42 
PRD_002423 O7  H21 SING N N 43 
PRD_002423 N5  C14 SING N N 44 
PRD_002423 N5  H22 SING N N 45 
PRD_002423 N5  H23 SING N N 46 
PRD_002423 C14 C15 SING N N 47 
PRD_002423 C14 C16 SING N N 48 
PRD_002423 C14 H24 SING N N 49 
PRD_002423 C15 O8  DOUB N N 50 
PRD_002423 C15 O10 SING N N 51 
PRD_002423 C16 C17 SING N N 52 
PRD_002423 C16 H25 SING N N 53 
PRD_002423 C16 H26 SING N N 54 
PRD_002423 C17 C18 SING N N 55 
PRD_002423 C17 H27 SING N N 56 
PRD_002423 C17 H28 SING N N 57 
PRD_002423 C18 O9  DOUB N N 58 
PRD_002423 O10 H29 SING N N 59 
PRD_002423 C2  N2  SING N N 60 
PRD_002423 C10 N4  SING N N 61 
PRD_002423 N1  C18 SING N N 62 
PRD_002423 C8  N3  SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PRD_002423 SMILES_CANONICAL CACTVS               3.385 "N[C@H](CCC(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O)C(O)=O)C(O)=O"   
PRD_002423 SMILES           CACTVS               3.385 "N[CH](CCC(=O)N[CH](CS)C(=O)N[CH](CCC(=O)N[CH](CS)C(=O)NCC(O)=O)C(O)=O)C(O)=O"          
PRD_002423 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(=O)O)C(=O)O)[C@H](C(=O)O)N" 
PRD_002423 SMILES           "OpenEye OEToolkits" 2.0.7 "C(CC(=O)NC(CS)C(=O)NC(CCC(=O)NC(CS)C(=O)NCC(=O)O)C(=O)O)C(C(=O)O)N"                    
# 
_pdbx_chem_comp_identifier.comp_id           PRD_002423 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-5-[[(2~{R})-1-[[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" 
# 
