data_5D0
# 
_chem_comp.id                                    5D0 
_chem_comp.name                                  "2,2'-[pentane-1,5-diylbis(oxybenzene-4,1-diyl)]di-1,4,5,6-tetrahydropyrimidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H32 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-07 
_chem_comp.pdbx_modified_date                    2016-01-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5D0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DKQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5D0 C1  C1  C 0 1 N N N -4.911 -6.692  -24.607 -2.503  1.015  0.000  C1  5D0 1  
5D0 C2  C2  C 0 1 N N N -5.492 -5.336  -24.210 -1.252  1.896  -0.013 C2  5D0 2  
5D0 C3  C3  C 0 1 N N N -4.604 -4.178  -24.663 -0.004  1.010  0.002  C3  5D0 3  
5D0 C8  C4  C 0 1 Y N N -0.121 -3.465  -24.737 4.863   1.193  0.002  C8  5D0 4  
5D0 C9  C5  C 0 1 Y N N 0.526  -4.308  -25.629 4.913   -0.196 0.018  C9  5D0 5  
5D0 C10 C6  C 0 1 Y N N 1.752  -3.937  -26.160 6.129   -0.842 0.023  C10 5D0 6  
5D0 C11 C7  C 0 1 Y N N 2.338  -2.727  -25.816 7.312   -0.102 0.013  C11 5D0 7  
5D0 C12 C8  C 0 1 Y N N 1.695  -1.880  -24.914 7.258   1.293  -0.004 C12 5D0 8  
5D0 C13 C9  C 0 1 Y N N 0.467  -2.251  -24.375 6.038   1.934  -0.009 C13 5D0 9  
5D0 C14 C10 C 0 1 Y N N -5.669 -9.009  -24.727 -4.871  1.213  -0.004 C14 5D0 10 
5D0 C15 C11 C 0 1 Y N N -5.554 -9.977  -23.742 -6.043  1.959  -0.017 C15 5D0 11 
5D0 C16 C12 C 0 1 Y N N -5.335 -11.305 -24.077 -7.266  1.323  -0.008 C16 5D0 12 
5D0 C19 C13 C 0 1 Y N N -5.557 -9.369  -26.061 -4.927  -0.175 0.012  C19 5D0 13 
5D0 C20 C14 C 0 1 N N N 3.668  -2.371  -26.414 8.620   -0.793 0.019  C20 5D0 14 
5D0 C21 C15 C 0 1 N N N -4.977 -13.098 -25.784 -8.637  -0.756 0.023  C21 5D0 15 
5D0 N23 N1  N 0 1 N N N -5.118 -14.064 -24.882 -8.667  -2.134 0.044  N23 5D0 16 
5D0 N25 N2  N 0 1 N N N 4.002  -1.169  -26.572 8.643   -2.085 0.034  N25 5D0 17 
5D0 C27 C16 C 0 1 N N N -4.308 -15.710 -26.567 -11.042 -2.065 -0.429 C27 5D0 18 
5D0 C30 C17 C 0 1 N N N 5.757  -1.641  -28.052 11.054  -2.044 -0.440 C30 5D0 19 
5D0 C31 C18 C 0 1 N N N 5.313  -0.669  -26.966 9.870   -2.873 0.062  C31 5D0 20 
5D0 C4  C19 C 0 1 N N N -3.644 -3.736  -23.562 1.247   1.890  -0.011 C4  5D0 21 
5D0 C5  C20 C 0 1 N N N -2.449 -2.984  -24.141 2.494   1.005  0.004  C5  5D0 22 
5D0 O6  O1  O 0 1 N N N -1.330 -3.864  -24.218 3.663   1.827  -0.009 O6  5D0 23 
5D0 O7  O2  O 0 1 N N N -5.893 -7.703  -24.371 -3.668  1.842  -0.013 O7  5D0 24 
5D0 C17 C21 C 0 1 Y N N -5.226 -11.666 -25.412 -7.326  -0.071 0.014  C17 5D0 25 
5D0 C18 C22 C 0 1 Y N N -5.328 -10.696 -26.399 -6.146  -0.817 0.020  C18 5D0 26 
5D0 N22 N3  N 0 1 N N N -4.606 -13.390 -26.950 -9.714  -0.043 0.005  N22 5D0 27 
5D0 N24 N4  N 0 1 N N N 4.503  -3.338  -26.787 9.772   -0.037 0.002  N24 5D0 28 
5D0 C26 C23 C 0 1 N N N -3.774 -14.514 -27.345 -11.059 -0.606 0.032  C26 5D0 29 
5D0 C28 C24 C 0 1 N N N -4.552 -15.383 -25.096 -9.941  -2.808 0.340  C28 5D0 30 
5D0 C29 C25 C 0 1 N N N 5.734  -3.062  -27.501 11.054  -0.697 0.294  C29 5D0 31 
5D0 H1  H1  H 0 1 N N N -4.014 -6.900  -24.005 -2.504  0.372  -0.880 H1  5D0 32 
5D0 H2  H2  H 0 1 N N N -4.642 -6.680  -25.673 -2.505  0.400  0.900  H2  5D0 33 
5D0 H3  H3  H 0 1 N N N -5.592 -5.299  -23.115 -1.250  2.511  -0.913 H3  5D0 34 
5D0 H4  H4  H 0 1 N N N -6.484 -5.225  -24.673 -1.251  2.539  0.867  H4  5D0 35 
5D0 H5  H5  H 0 1 N N N -4.019 -4.499  -25.538 -0.006  0.395  0.902  H5  5D0 36 
5D0 H6  H6  H 0 1 N N N -5.243 -3.327  -24.941 -0.005  0.367  -0.878 H6  5D0 37 
5D0 H7  H7  H 0 1 N N N 0.077  -5.249  -25.909 3.997   -0.768 0.027  H7  5D0 38 
5D0 H8  H8  H 0 1 N N N 2.257  -4.597  -26.849 6.168   -1.922 0.036  H8  5D0 39 
5D0 H9  H9  H 0 1 N N N 2.148  -0.940  -24.635 8.172   1.869  -0.013 H9  5D0 40 
5D0 H10 H10 H 0 1 N N N -0.033 -1.598  -23.675 5.996   3.013  -0.026 H10 5D0 41 
5D0 H11 H11 H 0 1 N N N -5.636 -9.694  -22.703 -5.996  3.038  -0.033 H11 5D0 42 
5D0 H12 H12 H 0 1 N N N -5.250 -12.054 -23.303 -8.177  1.904  -0.017 H12 5D0 43 
5D0 H13 H13 H 0 1 N N N -5.648 -8.620  -26.834 -4.014  -0.751 0.017  H13 5D0 44 
5D0 H15 H15 H 0 1 N N N -5.624 -13.878 -24.040 -7.864  -2.649 -0.133 H15 5D0 45 
5D0 H17 H17 H 0 1 N N N -5.258 -16.031 -27.020 -12.007 -2.527 -0.223 H17 5D0 46 
5D0 H18 H18 H 0 1 N N N -3.576 -16.529 -26.631 -10.835 -2.109 -1.498 H18 5D0 47 
5D0 H19 H19 H 0 1 N N N 6.778  -1.389  -28.375 11.985  -2.573 -0.235 H19 5D0 48 
5D0 H20 H20 H 0 1 N N N 5.073  -1.569  -28.910 10.952  -1.877 -1.512 H20 5D0 49 
5D0 H21 H21 H 0 1 N N N 6.011  -0.685  -26.116 10.065  -3.198 1.084  H21 5D0 50 
5D0 H22 H22 H 0 1 N N N 5.240  0.355   -27.362 9.748   -3.749 -0.576 H22 5D0 51 
5D0 H23 H23 H 0 1 N N N -4.179 -3.076  -22.863 1.249   2.506  -0.911 H23 5D0 52 
5D0 H24 H24 H 0 1 N N N -3.282 -4.624  -23.023 1.247   2.534  0.869  H24 5D0 53 
5D0 H25 H25 H 0 1 N N N -2.202 -2.131  -23.491 2.492   0.389  0.903  H25 5D0 54 
5D0 H26 H26 H 0 1 N N N -2.698 -2.618  -25.148 2.493   0.361  -0.876 H26 5D0 55 
5D0 H27 H27 H 0 1 N N N -5.229 -10.975 -27.438 -6.189  -1.896 0.032  H27 5D0 56 
5D0 H30 H30 H 0 1 N N N 4.274  -4.286  -26.567 9.739   0.911  -0.199 H30 5D0 57 
5D0 H31 H31 H 0 1 N N N -3.857 -14.692 -28.427 -11.704 -0.028 -0.630 H31 5D0 58 
5D0 H32 H32 H 0 1 N N N -2.722 -14.324 -27.084 -11.450 -0.555 1.048  H32 5D0 59 
5D0 H33 H33 H 0 1 N N N -5.246 -16.131 -24.684 -9.897  -3.847 0.013  H33 5D0 60 
5D0 H34 H34 H 0 1 N N N -3.592 -15.440 -24.563 -10.141 -2.763 1.410  H34 5D0 61 
5D0 H35 H35 H 0 1 N N N 5.828  -3.771  -28.337 11.148  -0.860 1.368  H35 5D0 62 
5D0 H36 H36 H 0 1 N N N 6.582  -3.192  -26.813 11.880  -0.081 -0.061 H36 5D0 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5D0 C30 C29 SING N N 1  
5D0 C30 C31 SING N N 2  
5D0 C29 N24 SING N N 3  
5D0 C26 N22 SING N N 4  
5D0 C26 C27 SING N N 5  
5D0 C31 N25 SING N N 6  
5D0 N22 C21 DOUB N N 7  
5D0 N24 C20 SING N N 8  
5D0 N25 C20 DOUB N N 9  
5D0 C27 C28 SING N N 10 
5D0 C20 C11 SING N N 11 
5D0 C18 C19 DOUB Y N 12 
5D0 C18 C17 SING Y N 13 
5D0 C10 C11 DOUB Y N 14 
5D0 C10 C9  SING Y N 15 
5D0 C19 C14 SING Y N 16 
5D0 C11 C12 SING Y N 17 
5D0 C21 C17 SING N N 18 
5D0 C21 N23 SING N N 19 
5D0 C9  C8  DOUB Y N 20 
5D0 C17 C16 DOUB Y N 21 
5D0 C28 N23 SING N N 22 
5D0 C12 C13 DOUB Y N 23 
5D0 C8  C13 SING Y N 24 
5D0 C8  O6  SING N N 25 
5D0 C14 O7  SING N N 26 
5D0 C14 C15 DOUB Y N 27 
5D0 C3  C2  SING N N 28 
5D0 C3  C4  SING N N 29 
5D0 C1  O7  SING N N 30 
5D0 C1  C2  SING N N 31 
5D0 O6  C5  SING N N 32 
5D0 C5  C4  SING N N 33 
5D0 C16 C15 SING Y N 34 
5D0 C1  H1  SING N N 35 
5D0 C1  H2  SING N N 36 
5D0 C2  H3  SING N N 37 
5D0 C2  H4  SING N N 38 
5D0 C3  H5  SING N N 39 
5D0 C3  H6  SING N N 40 
5D0 C9  H7  SING N N 41 
5D0 C10 H8  SING N N 42 
5D0 C12 H9  SING N N 43 
5D0 C13 H10 SING N N 44 
5D0 C15 H11 SING N N 45 
5D0 C16 H12 SING N N 46 
5D0 C19 H13 SING N N 47 
5D0 N23 H15 SING N N 48 
5D0 C27 H17 SING N N 49 
5D0 C27 H18 SING N N 50 
5D0 C30 H19 SING N N 51 
5D0 C30 H20 SING N N 52 
5D0 C31 H21 SING N N 53 
5D0 C31 H22 SING N N 54 
5D0 C4  H23 SING N N 55 
5D0 C4  H24 SING N N 56 
5D0 C5  H25 SING N N 57 
5D0 C5  H26 SING N N 58 
5D0 C18 H27 SING N N 59 
5D0 N24 H30 SING N N 60 
5D0 C26 H31 SING N N 61 
5D0 C26 H32 SING N N 62 
5D0 C28 H33 SING N N 63 
5D0 C28 H34 SING N N 64 
5D0 C29 H35 SING N N 65 
5D0 C29 H36 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5D0 SMILES           ACDLabs              12.01 "C(Oc2ccc(C=1NCCCN=1)cc2)CCCCOc3ccc(cc3)C4=NCCCN4"                                                                                                           
5D0 InChI            InChI                1.03  "InChI=1S/C25H32N4O2/c1(2-18-30-22-10-6-20(7-11-22)24-26-14-4-15-27-24)3-19-31-23-12-8-21(9-13-23)25-28-16-5-17-29-25/h6-13H,1-5,14-19H2,(H,26,27)(H,28,29)" 
5D0 InChIKey         InChI                1.03  KPYLNHFSSDNDFO-UHFFFAOYSA-N                                                                                                                                  
5D0 SMILES_CANONICAL CACTVS               3.385 "C(CCOc1ccc(cc1)C2=NCCCN2)CCOc3ccc(cc3)C4=NCCCN4"                                                                                                            
5D0 SMILES           CACTVS               3.385 "C(CCOc1ccc(cc1)C2=NCCCN2)CCOc3ccc(cc3)C4=NCCCN4"                                                                                                            
5D0 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C2=NCCCN2)OCCCCCOc3ccc(cc3)C4=NCCCN4"                                                                                                              
5D0 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C2=NCCCN2)OCCCCCOc3ccc(cc3)C4=NCCCN4"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5D0 "SYSTEMATIC NAME" ACDLabs              12.01 "2,2'-[pentane-1,5-diylbis(oxybenzene-4,1-diyl)]di-1,4,5,6-tetrahydropyrimidine"                    
5D0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[4-[5-[4-(1,4,5,6-tetrahydropyrimidin-2-yl)phenoxy]pentoxy]phenyl]-1,4,5,6-tetrahydropyrimidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5D0 "Create component" 2015-09-07 RCSB 
5D0 "Initial release"  2016-01-20 RCSB 
# 
