data_5P0
# 
_chem_comp.id                                    5P0 
_chem_comp.name                                  "(3Z,6S)-3-[(2R)-2-methyl-2,3-bis(oxidanyl)propylidene]-6-[(2S)-4-oxidanylbutan-2-yl]piperazine-2,5-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H20 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-23 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        272.298 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5P0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7V36 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5P0 C1  C1  C 0 1 N N S 36.073 42.906 73.404 -1.651 0.457  -1.086 C1  5P0 1  
5P0 C2  C2  C 0 1 N N N 37.480 42.572 73.918 -0.430 1.322  -1.046 C2  5P0 2  
5P0 C4  C3  C 0 1 N N N 38.449 42.585 71.643 0.996  -0.556 -0.747 C4  5P0 3  
5P0 C5  C4  C 0 1 N N N 37.226 43.298 71.186 -0.105 -1.449 -1.166 C5  5P0 4  
5P0 C9  C5  C 0 1 N N N 39.471 42.370 70.786 2.140  -1.054 -0.271 C9  5P0 5  
5P0 C10 C6  C 0 1 N N S 35.215 41.636 73.463 -2.378 0.566  0.255  C10 5P0 6  
5P0 C11 C7  C 0 1 N N R 40.568 41.345 71.046 3.184  -0.129 0.299  C11 5P0 7  
5P0 C12 C8  C 0 1 N N N 39.997 39.877 71.073 3.754  -0.733 1.584  C12 5P0 8  
5P0 C14 C9  C 0 1 N N N 41.610 41.468 69.907 4.311  0.057  -0.719 C14 5P0 9  
5P0 C16 C10 C 0 1 N N N 33.837 41.913 72.922 -2.783 2.021  0.500  C16 5P0 10 
5P0 C17 C11 C 0 1 N N N 35.865 40.503 72.632 -3.630 -0.314 0.230  C17 5P0 11 
5P0 C18 C12 C 0 1 N N N 35.169 39.159 72.955 -4.289 -0.303 1.610  C18 5P0 12 
5P0 N3  N1  N 0 1 N N N 38.537 42.417 73.048 0.806  0.830  -0.864 N3  5P0 13 
5P0 N6  N2  N 0 1 N N N 36.152 43.416 72.027 -1.338 -0.942 -1.339 N6  5P0 14 
5P0 O7  O1  O 0 1 N N N 37.132 43.768 70.074 0.102  -2.632 -1.352 O7  5P0 15 
5P0 O8  O2  O 0 1 N N N 37.706 42.397 75.109 -0.563 2.520  -1.184 O8  5P0 16 
5P0 O13 O3  O 0 1 N N N 41.110 39.024 71.174 4.744  0.143  2.125  O13 5P0 17 
5P0 O15 O4  O 0 1 N N N 41.072 41.652 72.318 2.592  1.138  0.590  O15 5P0 18 
5P0 O19 O5  O 0 1 N N N 35.933 38.137 72.340 -5.458 -1.125 1.587  O19 5P0 19 
5P0 H1  H1  H 0 1 N N N 35.626 43.669 74.058 -2.312 0.817  -1.875 H1  5P0 20 
5P0 H3  H3  H 0 1 N N N 39.512 42.950 69.876 2.316  -2.119 -0.294 H3  5P0 21 
5P0 H5  H5  H 0 1 N N N 35.136 41.307 74.510 -1.717 0.234  1.055  H5  5P0 22 
5P0 H6  H6  H 0 1 N N N 39.333 39.742 71.940 2.951  -0.866 2.310  H6  5P0 23 
5P0 H7  H7  H 0 1 N N N 39.439 39.668 70.148 4.206  -1.700 1.362  H7  5P0 24 
5P0 H8  H8  H 0 1 N N N 42.417 40.738 70.067 3.906  0.487  -1.635 H8  5P0 25 
5P0 H9  H9  H 0 1 N N N 41.123 41.269 68.941 5.067  0.725  -0.307 H9  5P0 26 
5P0 H10 H10 H 0 1 N N N 42.030 42.485 69.903 4.763  -0.910 -0.941 H10 5P0 27 
5P0 H11 H11 H 0 1 N N N 33.368 42.717 73.507 -3.444 2.354  -0.301 H11 5P0 28 
5P0 H12 H12 H 0 1 N N N 33.912 42.222 71.869 -3.301 2.099  1.455  H12 5P0 29 
5P0 H13 H13 H 0 1 N N N 33.225 41.002 72.994 -1.891 2.648  0.518  H13 5P0 30 
5P0 H14 H14 H 0 1 N N N 36.934 40.432 72.883 -4.330 0.073  -0.510 H14 5P0 31 
5P0 H15 H15 H 0 1 N N N 35.754 40.725 71.560 -3.351 -1.335 -0.032 H15 5P0 32 
5P0 H16 H16 H 0 1 N N N 34.145 39.158 72.554 -3.588 -0.689 2.351  H16 5P0 33 
5P0 H17 H17 H 0 1 N N N 35.136 39.003 74.043 -4.568 0.718  1.872  H17 5P0 34 
5P0 H18 H18 H 0 1 N N N 39.426 42.169 73.433 1.566  1.431  -0.814 H18 5P0 35 
5P0 H19 H19 H 0 1 N N N 35.348 43.893 71.672 -2.045 -1.530 -1.645 H19 5P0 36 
5P0 H20 H20 H 0 1 N N N 40.816 38.121 71.194 5.149  -0.177 2.943  H20 5P0 37 
5P0 H21 H21 H 0 1 N N N 40.382 41.556 72.964 1.931  1.110  1.296  H21 5P0 38 
5P0 H22 H22 H 0 1 N N N 35.535 37.293 72.517 -5.928 -1.165 2.431  H22 5P0 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5P0 C14 C11 SING N N 1  
5P0 O7  C5  DOUB N N 2  
5P0 C9  C11 SING N N 3  
5P0 C9  C4  DOUB N Z 4  
5P0 C11 C12 SING N N 5  
5P0 C11 O15 SING N N 6  
5P0 C12 O13 SING N N 7  
5P0 C5  C4  SING N N 8  
5P0 C5  N6  SING N N 9  
5P0 C4  N3  SING N N 10 
5P0 N6  C1  SING N N 11 
5P0 O19 C18 SING N N 12 
5P0 C17 C18 SING N N 13 
5P0 C17 C10 SING N N 14 
5P0 C16 C10 SING N N 15 
5P0 N3  C2  SING N N 16 
5P0 C1  C10 SING N N 17 
5P0 C1  C2  SING N N 18 
5P0 C2  O8  DOUB N N 19 
5P0 C1  H1  SING N N 20 
5P0 C9  H3  SING N N 21 
5P0 C10 H5  SING N N 22 
5P0 C12 H6  SING N N 23 
5P0 C12 H7  SING N N 24 
5P0 C14 H8  SING N N 25 
5P0 C14 H9  SING N N 26 
5P0 C14 H10 SING N N 27 
5P0 C16 H11 SING N N 28 
5P0 C16 H12 SING N N 29 
5P0 C16 H13 SING N N 30 
5P0 C17 H14 SING N N 31 
5P0 C17 H15 SING N N 32 
5P0 C18 H16 SING N N 33 
5P0 C18 H17 SING N N 34 
5P0 N3  H18 SING N N 35 
5P0 N6  H19 SING N N 36 
5P0 O13 H20 SING N N 37 
5P0 O15 H21 SING N N 38 
5P0 O19 H22 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5P0 InChI            InChI                1.03  "InChI=1S/C12H20N2O5/c1-7(3-4-15)9-11(18)13-8(10(17)14-9)5-12(2,19)6-16/h5,7,9,15-16,19H,3-4,6H2,1-2H3,(H,13,18)(H,14,17)/b8-5-/t7-,9-,12+/m0/s1" 
5P0 InChIKey         InChI                1.03  QZEGJTNFYRTELG-PMSMWWAASA-N                                                                                                                       
5P0 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](CCO)[C@@H]1NC(=O)/C(NC1=O)=C/[C@@](C)(O)CO"                                                                                              
5P0 SMILES           CACTVS               3.385 "C[CH](CCO)[CH]1NC(=O)C(NC1=O)=C[C](C)(O)CO"                                                                                                      
5P0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CCO)[C@H]1C(=O)N/C(=C\[C@](C)(CO)O)/C(=O)N1"                                                                                             
5P0 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CCO)C1C(=O)NC(=CC(C)(CO)O)C(=O)N1"                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           5P0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{Z},6~{S})-3-[(2~{R})-2-methyl-2,3-bis(oxidanyl)propylidene]-6-[(2~{S})-4-oxidanylbutan-2-yl]piperazine-2,5-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5P0 "Create component" 2021-08-23 PDBJ 
5P0 "Initial release"  2023-02-15 RCSB 
# 
