data_T20
# 
_chem_comp.id                                    T20 
_chem_comp.name                                  "3-nitro-N-{1-phenyl-5-[(piperidin-1-yl)methyl]-1H-1,3-benzimidazol-2-yl}benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-24 
_chem_comp.pdbx_modified_date                    2026-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.508 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T20 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4RMZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T20 C1  C1  C 0  1 Y N N N N N 36.524 159.389 -11.173 -0.537 -3.346 1.383  C1  T20 1  
T20 C2  C2  C 0  1 Y N N N N N 36.306 159.489 -12.556 -0.955 -4.626 1.690  C2  T20 2  
T20 C3  C3  C 0  1 Y N N N N N 36.953 158.598 -13.437 -0.846 -5.634 0.749  C3  T20 3  
T20 C4  C4  C 0  1 Y N N N N N 37.816 157.606 -12.928 -0.317 -5.364 -0.500 C4  T20 4  
T20 C5  C5  C 0  1 Y N N N N N 38.038 157.508 -11.602 0.102  -4.086 -0.812 C5  T20 5  
T20 C6  C6  C 0  1 Y N N N N N 37.374 158.446 -10.691 -0.007 -3.071 0.130  C6  T20 6  
T20 C7  C7  C 0  1 Y N N N N N 40.189 158.143 -8.965  2.931  -2.029 -0.508 C7  T20 7  
T20 C8  C8  C 0  1 Y N N N N N 38.783 158.210 -8.572  1.712  -1.371 -0.457 C8  T20 8  
T20 C9  C9  C 0  1 Y N N N N N 38.442 158.139 -7.196  1.647  0.009  -0.717 C9  T20 9  
T20 C10 C10 C 0  1 Y N N N N N 39.485 158.003 -6.217  2.818  0.705  -1.026 C10 T20 10 
T20 C11 C11 C 0  1 Y N N N N N 40.843 157.922 -6.598  4.020  0.035  -1.073 C11 T20 11 
T20 C12 C12 C 0  1 Y N N N N N 41.184 158.007 -8.027  4.078  -1.326 -0.815 C12 T20 12 
T20 C13 C13 C 0  1 Y N N N N N 31.583 157.914 -7.479  -4.575 -0.654 0.321  C13 T20 13 
T20 C14 C14 C 0  1 Y N N N N N 30.248 157.865 -7.884  -5.940 -0.631 0.518  C14 T20 14 
T20 C15 C15 C 0  1 Y N N N N N 29.912 158.214 -9.188  -6.640 0.557  0.395  C15 T20 15 
T20 C16 C16 C 0  1 Y N N N N N 30.900 158.582 -10.048 -5.976 1.728  0.074  C16 T20 16 
T20 C17 C17 C 0  1 Y N N N N N 32.266 158.636 -9.647  -4.611 1.718  -0.126 C17 T20 17 
T20 C18 C18 C 0  1 Y N N N N N 32.584 158.326 -8.350  -3.898 0.524  0.002  C18 T20 18 
T20 N19 N19 N 0  1 Y N N N N N 37.578 158.353 -9.252  0.413  -1.772 -0.186 N19 T20 19 
T20 C20 C20 C 0  1 Y N N N N N 36.516 158.390 -8.359  -0.382 -0.664 -0.285 C20 T20 20 
T20 N21 N21 N 0  1 Y N N N N N 37.014 158.237 -7.118  0.345  0.379  -0.596 N21 T20 21 
T20 C22 C22 C 0  1 N N N N N N 41.964 157.798 -5.538  5.283  0.787  -1.407 C22 T20 22 
T20 N23 N23 N 0  1 N N N N N N 35.109 158.470 -8.807  -1.751 -0.647 -0.086 N23 T20 23 
T20 C24 C24 C 0  1 N N N N N N 34.026 158.331 -7.863  -2.436 0.507  -0.210 C24 T20 24 
T20 O25 O25 O 0  1 N N N N N N 34.315 158.168 -6.628  -1.851 1.533  -0.497 O25 T20 25 
T20 N26 N26 N 1  1 N N N N N N 30.536 158.922 -11.405 -6.733 2.992  -0.062 N26 T20 26 
T20 O27 O27 O 0  1 N N N N N N 31.409 158.726 -12.365 -6.151 4.023  -0.349 O27 T20 27 
T20 O28 O28 O -1 1 N N N N N N 29.323 159.410 -11.684 -7.938 3.002  0.114  O28 T20 28 
T20 C30 C30 C 0  1 N N N N N N 43.175 156.572 -4.037  5.035  2.305  0.462  C30 T20 29 
T20 C31 C31 C 0  1 N N N N N N 43.409 155.272 -3.371  5.628  2.703  1.816  C31 T20 30 
T20 C32 C32 C 0  1 N N N N N N 44.094 154.318 -4.254  7.037  3.263  1.605  C32 T20 31 
T20 C33 C33 C 0  1 N N N N N N 43.472 154.235 -5.561  7.896  2.209  0.901  C33 T20 32 
T20 C34 C34 C 0  1 N N N N N N 43.205 155.558 -6.193  7.237  1.825  -0.426 C34 T20 33 
T20 N35 N35 N 0  1 N N N N N N 42.457 156.446 -5.294  5.892  1.295  -0.171 N35 T20 34 
T20 H1  H1  H 0  1 N N N N N N 36.018 160.060 -10.495 -0.627 -2.558 2.116  H1  T20 35 
T20 H2  H2  H 0  1 N N N N N N 35.643 160.248 -12.945 -1.368 -4.840 2.664  H2  T20 36 
T20 H3  H3  H 0  1 N N N N N N 36.787 158.675 -14.501 -1.173 -6.635 0.991  H3  T20 37 
T20 H4  H4  H 0  1 N N N N N N 38.303 156.920 -13.605 -0.233 -6.154 -1.232 H4  T20 38 
T20 H5  H5  H 0  1 N N N N N N 38.698 156.746 -11.214 0.515  -3.875 -1.788 H5  T20 39 
T20 H6  H6  H 0  1 N N N N N N 40.451 158.201 -10.011 2.983  -3.088 -0.304 H6  T20 40 
T20 H7  H7  H 0  1 N N N N N N 39.226 157.962 -5.169  2.780  1.765  -1.229 H7  T20 41 
T20 H8  H8  H 0  1 N N N N N N 42.217 157.962 -8.339  5.027  -1.840 -0.855 H8  T20 42 
T20 H9  H9  H 0  1 N N N N N N 31.842 157.627 -6.471  -4.030 -1.582 0.417  H9  T20 43 
T20 H10 H10 H 0  1 N N N N N N 29.480 157.558 -7.189  -6.464 -1.541 0.768  H10 T20 44 
T20 H11 H11 H 0  1 N N N N N N 28.882 158.193 -9.513  -7.708 0.570  0.550  H11 T20 45 
T20 H12 H12 H 0  1 N N N N N N 33.036 158.916 -10.351 -4.095 2.633  -0.377 H12 T20 46 
T20 H13 H13 H 0  1 N N N N N N 42.813 158.413 -5.871  5.982  0.118  -1.909 H13 T20 47 
T20 H14 H14 H 0  1 N N N N N N 41.576 158.193 -4.588  5.044  1.623  -2.065 H14 T20 48 
T20 H15 H15 H 0  1 N N N N N N 34.906 158.622 -9.774  -2.218 -1.466 0.143  H15 T20 49 
T20 H16 H16 H 0  1 N N N N N N 44.148 157.044 -4.235  4.036  1.893  0.610  H16 T20 50 
T20 H17 H17 H 0  1 N N N N N N 42.588 157.211 -3.361  4.973  3.183  -0.180 H17 T20 51 
T20 H18 H18 H 0  1 N N N N N N 42.440 154.846 -3.072  4.999  3.464  2.278  H18 T20 52 
T20 H19 H19 H 0  1 N N N N N N 44.029 155.437 -2.477  5.676  1.828  2.464  H19 T20 53 
T20 H20 H20 H 0  1 N N N N N N 44.069 153.323 -3.787  6.984  4.161  0.989  H20 T20 54 
T20 H21 H21 H 0  1 N N N N N N 45.139 154.639 -4.379  7.479  3.509  2.570  H21 T20 55 
T20 H22 H22 H 0  1 N N N N N N 42.515 153.703 -5.455  8.889  2.617  0.709  H22 T20 56 
T20 H23 H23 H 0  1 N N N N N N 44.137 153.663 -6.225  7.981  1.326  1.534  H23 T20 57 
T20 H24 H24 H 0  1 N N N N N N 44.164 156.033 -6.446  7.166  2.706  -1.064 H24 T20 58 
T20 H25 H25 H 0  1 N N N N N N 42.619 155.403 -7.111  7.839  1.064  -0.924 H25 T20 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T20 C3  C4  DOUB Y N 1  
T20 C3  C2  SING Y N 2  
T20 C4  C5  SING Y N 3  
T20 C2  C1  DOUB Y N 4  
T20 O27 N26 DOUB N N 5  
T20 O28 N26 SING N N 6  
T20 C5  C6  DOUB Y N 7  
T20 N26 C16 SING N N 8  
T20 C1  C6  SING Y N 9  
T20 C6  N19 SING N N 10 
T20 C16 C17 DOUB Y N 11 
T20 C16 C15 SING Y N 12 
T20 C17 C18 SING Y N 13 
T20 N19 C8  SING Y N 14 
T20 N19 C20 SING Y N 15 
T20 C15 C14 DOUB Y N 16 
T20 C7  C8  DOUB Y N 17 
T20 C7  C12 SING Y N 18 
T20 N23 C20 SING N N 19 
T20 N23 C24 SING N N 20 
T20 C8  C9  SING Y N 21 
T20 C20 N21 DOUB Y N 22 
T20 C18 C24 SING N N 23 
T20 C18 C13 DOUB Y N 24 
T20 C12 C11 DOUB Y N 25 
T20 C14 C13 SING Y N 26 
T20 C24 O25 DOUB N N 27 
T20 C9  N21 SING Y N 28 
T20 C9  C10 DOUB Y N 29 
T20 C11 C10 SING Y N 30 
T20 C11 C22 SING N N 31 
T20 C34 C33 SING N N 32 
T20 C34 N35 SING N N 33 
T20 C33 C32 SING N N 34 
T20 C22 N35 SING N N 35 
T20 N35 C30 SING N N 36 
T20 C32 C31 SING N N 37 
T20 C30 C31 SING N N 38 
T20 C1  H1  SING N N 39 
T20 C2  H2  SING N N 40 
T20 C3  H3  SING N N 41 
T20 C4  H4  SING N N 42 
T20 C5  H5  SING N N 43 
T20 C7  H6  SING N N 44 
T20 C10 H7  SING N N 45 
T20 C12 H8  SING N N 46 
T20 C13 H9  SING N N 47 
T20 C14 H10 SING N N 48 
T20 C15 H11 SING N N 49 
T20 C17 H12 SING N N 50 
T20 C22 H13 SING N N 51 
T20 C22 H14 SING N N 52 
T20 N23 H15 SING N N 53 
T20 C30 H16 SING N N 54 
T20 C30 H17 SING N N 55 
T20 C31 H18 SING N N 56 
T20 C31 H19 SING N N 57 
T20 C32 H20 SING N N 58 
T20 C32 H21 SING N N 59 
T20 C33 H22 SING N N 60 
T20 C33 H23 SING N N 61 
T20 C34 H24 SING N N 62 
T20 C34 H25 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T20 SMILES           ACDLabs              14.52   "[O-][N+](=O)c1cccc(c1)C(=O)Nc1nc2cc(CN3CCCCC3)ccc2n1c1ccccc1"                                                                                                                      
T20 InChI            InChI                1.06    "InChI=1S/C26H25N5O3/c32-25(20-8-7-11-22(17-20)31(33)34)28-26-27-23-16-19(18-29-14-5-2-6-15-29)12-13-24(23)30(26)21-9-3-1-4-10-21/h1,3-4,7-13,16-17H,2,5-6,14-15,18H2,(H,27,28,32)" 
T20 InChIKey         InChI                1.06    IEOZVBDPTHRYGK-UHFFFAOYSA-N                                                                                                                                                         
T20 SMILES_CANONICAL CACTVS               3.385   "[O-][N+](=O)c1cccc(c1)C(=O)Nc2nc3cc(CN4CCCCC4)ccc3n2c5ccccc5"                                                                                                                      
T20 SMILES           CACTVS               3.385   "[O-][N+](=O)c1cccc(c1)C(=O)Nc2nc3cc(CN4CCCCC4)ccc3n2c5ccccc5"                                                                                                                      
T20 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)n2c3ccc(cc3nc2NC(=O)c4cccc(c4)[N+](=O)[O-])CN5CCCCC5"                                                                                                                    
T20 SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)n2c3ccc(cc3nc2NC(=O)c4cccc(c4)[N+](=O)[O-])CN5CCCCC5"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T20 "SYSTEMATIC NAME" ACDLabs              14.52   "3-nitro-N-{1-phenyl-5-[(piperidin-1-yl)methyl]-1H-1,3-benzimidazol-2-yl}benzamide" 
T20 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-nitro-~{N}-[1-phenyl-5-(piperidin-1-ylmethyl)benzimidazol-2-yl]benzamide"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T20 "Create component"   2014-10-24 RCSB 
T20 "Initial release"    2016-03-23 RCSB 
T20 "Other modification" 2026-04-05 RCSB 
# 
