data_VO0
# 
_chem_comp.id                                    VO0 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H16 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-01 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        176.214 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VO0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K7L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VO0 CAA C1  C 0 1 N N R N N N 26.778 -18.320 -4.179 -1.182 -0.053 -0.503 CAA VO0 1  
VO0 CAB C2  C 0 1 N N S N N N 27.765 -19.272 -3.557 -0.367 -1.370 -0.550 CAB VO0 2  
VO0 CAC C3  C 0 1 N N R N N N 28.771 -18.334 -2.950 1.089  -0.840 -0.482 CAC VO0 3  
VO0 CAD C4  C 0 1 N N R N N N 27.882 -17.248 -2.360 0.972  0.379  0.457  CAD VO0 4  
VO0 CAF C5  C 0 1 N N N N N N 25.382 -18.940 -4.236 -2.591 -0.318 0.032  CAF VO0 5  
VO0 CAJ C6  C 0 1 N N N N N N 28.628 -15.910 -2.211 1.882  1.505  -0.036 CAJ VO0 6  
VO0 CAL C7  C 0 1 N N N N N N 26.930 -15.960 -4.221 -0.536 2.228  0.024  CAL VO0 7  
VO0 NAE N1  N 0 1 N N N N N N 26.766 -17.124 -3.326 -0.434 0.820  0.427  NAE VO0 8  
VO0 NAK N2  N 0 1 N N N N N N 29.641 -15.950 -1.146 3.283  1.071  0.037  NAK VO0 9  
VO0 OAG O1  O 0 1 N N N N N N 27.113 -20.020 -2.518 -0.664 -2.197 0.577  OAG VO0 10 
VO0 OAH O2  O 0 1 N N N N N N 29.513 -19.000 -1.935 1.960  -1.826 0.075  OAH VO0 11 
VO0 OAI O3  O 0 1 N N N N N N 24.506 -18.062 -4.971 -3.361 0.884  -0.042 OAI VO0 12 
VO0 H1  H1  H 0 1 N N N N N N 27.104 -18.059 -5.196 -1.229 0.400  -1.493 H1  VO0 13 
VO0 H2  H2  H 0 1 N N N N N N 28.228 -19.921 -4.315 -0.545 -1.905 -1.483 H2  VO0 14 
VO0 H3  H3  H 0 1 N N N N N N 29.426 -17.913 -3.727 1.434  -0.534 -1.470 H3  VO0 15 
VO0 H4  H4  H 0 1 N N N N N N 27.504 -17.570 -1.378 1.253  0.093  1.471  H4  VO0 16 
VO0 H5  H5  H 0 1 N N N N N N 24.997 -19.074 -3.215 -3.068 -1.092 -0.569 H5  VO0 17 
VO0 H6  H6  H 0 1 N N N N N N 25.433 -19.916 -4.740 -2.530 -0.648 1.069  H6  VO0 18 
VO0 H7  H7  H 0 1 N N N N N N 29.126 -15.675 -3.163 1.630  1.750  -1.069 H7  VO0 19 
VO0 H8  H8  H 0 1 N N N N N N 27.897 -15.122 -1.975 1.741  2.386  0.590  H8  VO0 20 
VO0 H9  H9  H 0 1 N N N N N N 26.927 -15.035 -3.625 -1.584 2.527  0.008  H9  VO0 21 
VO0 H10 H10 H 0 1 N N N N N N 27.884 -16.045 -4.762 0.009  2.850  0.734  H10 VO0 22 
VO0 H11 H11 H 0 1 N N N N N N 26.101 -15.933 -4.943 -0.107 2.353  -0.971 H11 VO0 23 
VO0 H13 H13 H 0 1 N N N N N N 30.098 -15.062 -1.086 3.425  0.219  -0.484 H13 VO0 24 
VO0 H14 H14 H 0 1 N N N N N N 29.199 -16.156 -0.273 3.905  1.799  -0.284 H14 VO0 25 
VO0 H16 H16 H 0 1 N N N N N N 27.733 -20.622 -2.123 -0.178 -3.033 0.590  H16 VO0 26 
VO0 H17 H17 H 0 1 N N N N N N 30.145 -18.399 -1.558 2.009  -2.644 -0.439 H17 VO0 27 
VO0 H18 H18 H 0 1 N N N N N N 23.636 -18.442 -5.010 -4.268 0.790  0.281  H18 VO0 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VO0 OAI CAF SING N N 1  
VO0 CAF CAA SING N N 2  
VO0 CAL NAE SING N N 3  
VO0 CAA CAB SING N N 4  
VO0 CAA NAE SING N N 5  
VO0 CAB CAC SING N N 6  
VO0 CAB OAG SING N N 7  
VO0 NAE CAD SING N N 8  
VO0 CAC CAD SING N N 9  
VO0 CAC OAH SING N N 10 
VO0 CAD CAJ SING N N 11 
VO0 CAJ NAK SING N N 12 
VO0 CAA H1  SING N N 13 
VO0 CAB H2  SING N N 14 
VO0 CAC H3  SING N N 15 
VO0 CAD H4  SING N N 16 
VO0 CAF H5  SING N N 17 
VO0 CAF H6  SING N N 18 
VO0 CAJ H7  SING N N 19 
VO0 CAJ H8  SING N N 20 
VO0 CAL H9  SING N N 21 
VO0 CAL H10 SING N N 22 
VO0 CAL H11 SING N N 23 
VO0 NAK H13 SING N N 24 
VO0 NAK H14 SING N N 25 
VO0 OAG H16 SING N N 26 
VO0 OAH H17 SING N N 27 
VO0 OAI H18 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VO0 InChI            InChI                1.06  "InChI=1S/C7H16N2O3/c1-9-4(2-8)6(11)7(12)5(9)3-10/h4-7,10-12H,2-3,8H2,1H3/t4-,5-,6-,7+/m1/s1" 
VO0 InChIKey         InChI                1.06  NUCGMCIENZGSKH-GBNDHIKLSA-N                                                                   
VO0 SMILES_CANONICAL CACTVS               3.385 "CN1[C@H](CN)[C@@H](O)[C@@H](O)[C@H]1CO"                                                      
VO0 SMILES           CACTVS               3.385 "CN1[CH](CN)[CH](O)[CH](O)[CH]1CO"                                                            
VO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]([C@H]([C@H]([C@H]1CO)O)O)CN"                                                       
VO0 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C(C(C(C1CO)O)O)CN"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           VO0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VO0 "Create component" 2023-08-01 PDBJ 
VO0 "Initial release"  2024-04-10 RCSB 
# 
