data_HB1
# 
_chem_comp.id                                    HB1 
_chem_comp.name                                  RUTHENIUM-PYRIDOCARBAZOLE-1 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H13 N3 O3 Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-08-18 
_chem_comp.pdbx_modified_date                    2023-09-23 
_chem_comp.pdbx_ambiguous_flag                   Y 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        480.438 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HB1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2BZH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HB1 O3   O3   O  0 1 N N N -19.178 -33.893 -4.938 -19.178 -33.893 -4.938 O3   HB1 1  
HB1 C4   C4   C  0 1 N N N -20.250 -33.709 -4.720 -20.250 -33.709 -4.720 C4   HB1 2  
HB1 RU1  RU1  RU 0 0 N N N -22.028 -33.350 -4.532 -22.028 -33.350 -4.532 RU1  HB1 3  
HB1 C5   C5   C  0 1 N N R -23.705 -31.890 -4.850 -23.705 -31.890 -4.850 C5   HB1 4  
HB1 C6   C6   C  0 1 N N N -22.472 -31.363 -5.355 -22.472 -31.363 -5.355 C6   HB1 5  
HB1 C7   C7   C  0 1 N N N -22.016 -32.211 -6.370 -22.016 -32.211 -6.370 C7   HB1 6  
HB1 C8   C8   C  0 1 N N N -22.944 -33.270 -6.529 -22.944 -33.270 -6.529 C8   HB1 7  
HB1 C9   C9   C  0 1 N N N -23.988 -33.064 -5.590 -23.988 -33.064 -5.590 C9   HB1 8  
HB1 N3   N3   N  0 1 Y N N -21.838 -32.851 -2.455 -21.838 -32.851 -2.455 N3   HB1 9  
HB1 C2   C2   C  0 1 Y N N -21.520 -31.660 -1.871 -21.520 -31.660 -1.871 C2   HB1 10 
HB1 N1   N1   N  0 1 Y N N -22.523 -35.179 -3.651 -22.523 -35.179 -3.651 N1   HB1 11 
HB1 C11  C11  C  0 1 Y N N -22.937 -36.447 -3.937 -22.937 -36.447 -3.937 C11  HB1 12 
HB1 C16  C16  C  0 1 Y N N -23.206 -37.177 -2.729 -23.206 -37.177 -2.729 C16  HB1 13 
HB1 C15  C15  C  0 1 Y N N -23.624 -38.505 -2.798 -23.624 -38.505 -2.798 C15  HB1 14 
HB1 C14  C14  C  0 1 Y N N -23.748 -39.064 -4.057 -23.748 -39.064 -4.057 C14  HB1 15 
HB1 C13  C13  C  0 1 Y N N -23.487 -38.332 -5.224 -23.487 -38.332 -5.224 C13  HB1 16 
HB1 C12  C12  C  0 1 Y N N -23.086 -37.015 -5.185 -23.086 -37.015 -5.185 C12  HB1 17 
HB1 C17  C17  C  0 1 Y N N -22.944 -36.274 -1.660 -22.944 -36.274 -1.660 C17  HB1 18 
HB1 C10  C10  C  0 1 Y N N -22.557 -35.073 -2.322 -22.557 -35.073 -2.322 C10  HB1 19 
HB1 C18  C18  C  0 1 Y N N -22.968 -36.208 -0.259 -22.968 -36.208 -0.259 C18  HB1 20 
HB1 C19  C19  C  0 1 N N N -23.361 -37.239 0.750  -23.361 -37.239 0.750  C19  HB1 21 
HB1 O1   O1   O  0 1 N N N -23.725 -38.388 0.588  -23.725 -38.388 0.588  O1   HB1 22 
HB1 C21  C21  C  0 1 Y N N -22.634 -35.021 0.426  -22.634 -35.021 0.426  C21  HB1 23 
HB1 C20  C20  C  0 1 N N N -22.809 -35.261 1.863  -22.809 -35.261 1.863  C20  HB1 24 
HB1 N2   N2   N  0 1 N N N -23.223 -36.594 1.983  -23.223 -36.594 1.983  N2   HB1 25 
HB1 O2   O2   O  0 1 N N N -22.643 -34.516 2.807  -22.643 -34.516 2.807  O2   HB1 26 
HB1 C22  C22  C  0 1 Y N N -22.238 -33.799 -0.240 -22.238 -33.799 -0.240 C22  HB1 27 
HB1 C3   C3   C  0 1 Y N N -22.192 -33.881 -1.651 -22.192 -33.881 -1.651 C3   HB1 28 
HB1 C23  C23  C  0 1 Y N N -21.859 -32.549 0.350  -21.859 -32.549 0.350  C23  HB1 29 
HB1 C1   C1   C  0 1 Y N N -21.514 -31.494 -0.471 -21.514 -31.494 -0.471 C1   HB1 30 
HB1 H6C1 H6C1 H  0 0 N N N -21.880 -30.576 -4.864 -21.880 -30.576 -4.864 H6C1 HB1 31 
HB1 H7C1 H7C1 H  0 0 N N N -21.016 -32.177 -6.827 -21.016 -32.177 -6.827 H7C1 HB1 32 
HB1 H8C1 H8C1 H  0 0 N N N -22.770 -34.194 -7.100 -22.770 -34.194 -7.100 H8C1 HB1 33 
HB1 H9C1 H9C1 H  0 0 N N N -24.714 -33.833 -5.288 -24.715 -33.833 -5.288 H9C1 HB1 34 
HB1 H2   H2   H  0 1 N N N -21.265 -30.819 -2.500 -21.265 -30.819 -2.500 H2   HB1 35 
HB1 H1   H1   H  0 1 N N N -21.563 -35.459 -3.639 -21.563 -35.458 -3.639 H1   HB1 36 
HB1 H15  H15  H  0 1 N N N -23.842 -39.073 -1.906 -23.842 -39.074 -1.906 H15  HB1 37 
HB1 H14  H14  H  0 1 N N N -24.055 -40.096 -4.144 -24.055 -40.096 -4.144 H14  HB1 38 
HB1 H13  H13  H  0 1 N N N -23.604 -38.816 -6.183 -23.604 -38.816 -6.183 H13  HB1 39 
HB1 H12  H12  H  0 1 N N N -22.897 -36.454 -6.088 -22.897 -36.454 -6.088 H12  HB1 40 
HB1 HB   HB   H  0 1 N N N -23.402 -37.039 2.861  -23.402 -37.039 2.861  HB   HB1 41 
HB1 H23  H23  H  0 1 N N N -21.843 -32.434 1.424  -21.844 -32.434 1.424  H23  HB1 42 
HB1 HA   HA   H  0 1 N N N -21.240 -30.542 -0.041 -21.240 -30.542 -0.041 HA   HB1 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HB1 O3  C4   TRIP N N 1  
HB1 C4  RU1  SING N N 2  
HB1 RU1 C5   SING N N 3  
HB1 RU1 C6   SING N N 4  
HB1 RU1 C7   SING N N 5  
HB1 RU1 C8   SING N N 6  
HB1 RU1 C9   SING N N 7  
HB1 RU1 N3   SING N N 8  
HB1 RU1 N1   SING N N 9  
HB1 C5  C6   DOUB N N 10 
HB1 C5  C9   DOUB N N 11 
HB1 C6  C7   SING N N 12 
HB1 C6  H6C1 SING N N 13 
HB1 C7  C8   DOUB N N 14 
HB1 C7  H7C1 SING N N 15 
HB1 C8  C9   SING N N 16 
HB1 C8  H8C1 SING N N 17 
HB1 C9  H9C1 SING N N 18 
HB1 N3  C2   DOUB Y N 19 
HB1 N3  C3   SING Y N 20 
HB1 C2  C1   SING Y N 21 
HB1 C2  H2   SING N N 22 
HB1 N1  C11  SING Y N 23 
HB1 N1  C10  SING Y N 24 
HB1 N1  H1   SING N N 25 
HB1 C11 C16  SING Y N 26 
HB1 C11 C12  DOUB Y N 27 
HB1 C16 C15  DOUB Y N 28 
HB1 C16 C17  SING Y N 29 
HB1 C15 C14  SING Y N 30 
HB1 C15 H15  SING N N 31 
HB1 C14 C13  DOUB Y N 32 
HB1 C14 H14  SING N N 33 
HB1 C13 C12  SING Y N 34 
HB1 C13 H13  SING N N 35 
HB1 C12 H12  SING N N 36 
HB1 C17 C10  SING Y N 37 
HB1 C17 C18  DOUB Y N 38 
HB1 C10 C3   DOUB Y N 39 
HB1 C18 C19  SING N N 40 
HB1 C18 C21  SING Y N 41 
HB1 C19 O1   DOUB N N 42 
HB1 C19 N2   SING N N 43 
HB1 C21 C20  SING N N 44 
HB1 C21 C22  DOUB Y N 45 
HB1 C20 N2   SING N N 46 
HB1 C20 O2   DOUB N N 47 
HB1 N2  HB   SING N N 48 
HB1 C22 C3   SING Y N 49 
HB1 C22 C23  SING Y N 50 
HB1 C23 C1   DOUB Y N 51 
HB1 C23 H23  SING N N 52 
HB1 C1  HA   SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HB1 InChI            InChI                1.06  "InChI=1S/C17H9N3O2.C5H4.CO.Ru/c21-16-12-9-5-3-7-18-14(9)15-11(13(12)17(22)20-16)8-4-1-2-6-10(8)19-15;1-2-4-5-3-1;1-2;/h1-7,19H,(H,20,21,22);1-4H;;" 
HB1 InChIKey         InChI                1.06  HQDDSWVENMEGOZ-UHFFFAOYSA-N                                                                                                                          
HB1 SMILES_CANONICAL CACTVS               3.385 "[Ru].O=C1NC(=O)c2c1c3cccnc3c4[nH]c5ccccc5c24.[C-]#[O+].C6=C[CH]=[C@@]=[CH]6"                                                                        
HB1 SMILES           CACTVS               3.385 "[Ru].O=C1NC(=O)c2c1c3cccnc3c4[nH]c5ccccc5c24.[C-]#[O+].C6=C[CH]=[C]=[CH]6"                                                                          
HB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3c4c(c5c6c3[NH]2[Ru]7891([N]6=CC=C5)([CH]2=[CH]7[CH]8=C9=[CH]12)C#O)C(=O)NC4=O"                                                        
HB1 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)-c3c4c(c5c6c3[NH]2[Ru]7891([N]6=CC=C5)([CH]2=[CH]7[CH]8=C9=[CH]12)C#O)C(=O)NC4=O"                                                        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HB1 "Create component"  2005-08-18 EBI  
HB1 "Modify descriptor" 2023-09-23 RCSB 
# 
