data_WZ1
#

_chem_comp.id                                   WZ1
_chem_comp.name                                 "methyl 3-S-alpha-D-mannopyranosyl-3-thio-alpha-D-mannopyranoside"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H24 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Methyl(alpha-D-mannopyranosyl)-(1->3)-S-alpha-D-mannopyranoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-01-09
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       372.389
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WZ1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BVT
_chem_comp.pdbx_subcomponent_list               "Z4R MAN"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
WZ1  O41   O41   O  0  1  N  N  N  28.588  63.746  11.249   2.440   2.444  -0.904  O4   Z4R   1  1  polymer  1  
WZ1  C41   C41   C  0  1  N  N  R  28.201  65.038  11.779   2.402   1.376   0.045  C4   Z4R   2  1  polymer  1  
WZ1  C51   C51   C  0  1  N  N  R  26.709  64.921  12.171   3.593   0.442  -0.189  C5   Z4R   3  1  polymer  1  
WZ1  C61   C61   C  0  1  N  N  N  26.410  63.916  13.308   4.896   1.211   0.040  C6   Z4R   4  1  polymer  1  
WZ1  O61   O61   O  0  1  N  N  N  25.287  63.085  12.957   6.006   0.374  -0.291  O6   Z4R   5  1  polymer  1  
WZ1  O01   O01   O  0  1  N  N  N  26.226  66.238  12.570   3.521  -0.656   0.722  O5   Z4R   6  1  polymer  1  
WZ1  C11   C11   C  0  1  N  N  S  26.251  67.239  11.508   2.348  -1.460   0.576  C1   Z4R   7  1  polymer  1  
WZ1  O11   O11   O  0  1  N  N  N  25.599  66.786  10.318   2.292  -1.983  -0.752  O1   Z4R   8  1  polymer  1  
WZ1  C71   C71   C  0  1  N  N  N  24.369  67.512  10.063   3.283  -2.975  -1.029  C1M  Z4R   9  1  polymer  1  
WZ1  C21   C21   C  0  1  N  N  R  27.690  67.492  11.036   1.108  -0.603   0.840  C2   Z4R  10  1  polymer  1  
WZ1  O21   O21   O  0  1  N  N  N  28.414  68.254  12.009   1.137  -0.122   2.186  O2   Z4R  11  1  polymer  1  
WZ1  C31   C31   C  0  1  N  N  S  28.438  66.174  10.729   1.102   0.585  -0.127  C3   Z4R  12  1  polymer  1  
WZ1  S12   S12   S  0  1  N  N  N  30.213  66.584  10.489  -0.314   1.658   0.238  S3   Z4R  13  1  polymer  1  
WZ1  C12   C12   C  0  1  N  N  R  30.744  65.286   9.344  -1.737   0.607  -0.163  C1   MAN  14  2  polymer  1  
WZ1  C22   C22   C  0  1  N  N  S  32.240  65.389   8.980  -3.016   1.450  -0.143  C2   MAN  15  2  polymer  1  
WZ1  C32   C32   C  0  1  N  N  S  32.519  66.439   7.884  -4.219   0.544  -0.424  C3   MAN  16  2  polymer  1  
WZ1  C42   C42   C  0  1  N  N  S  31.503  66.444   6.733  -4.249  -0.582   0.614  C4   MAN  17  2  polymer  1  
WZ1  C52   C52   C  0  1  N  N  R  30.093  66.490   7.326  -2.923  -1.346   0.566  C5   MAN  18  2  polymer  1  
WZ1  C62   C62   C  0  1  N  N  N  29.001  66.447   6.266  -2.755  -1.989  -0.812  C6   MAN  19  2  polymer  1  
WZ1  O22   O22   O  0  1  N  N  N  32.719  64.086   8.573  -2.936   2.462  -1.148  O2   MAN  20  2  polymer  1  
WZ1  O32   O32   O  0  1  N  N  N  33.795  66.069   7.305  -4.101  -0.016  -1.733  O3   MAN  21  2  polymer  1  
WZ1  O42   O42   O  0  1  N  N  N  31.700  67.609   5.923  -4.432  -0.026   1.918  O4   MAN  22  2  polymer  1  
WZ1  O02   O02   O  0  1  N  N  N  29.947  65.299   8.134  -1.844  -0.440   0.804  O5   MAN  23  2  polymer  1  
WZ1  O62   O62   O  0  1  N  N  N  27.724  66.620   6.955  -1.596  -2.825  -0.810  O6   MAN  24  2  polymer  1  
WZ1  HO41  HO41  H  0  0  N  N  N  28.673  63.803  10.305   3.240   2.985  -0.855  HO4  Z4R  25  1  polymer  1  
WZ1  H41   H41   H  0  1  N  N  N  28.811  65.308  12.654   2.451   1.783   1.054  H4   Z4R  26  1  polymer  1  
WZ1  H51   H51   H  0  1  N  N  N  26.191  64.534  11.281   3.566   0.068  -1.212  H5   Z4R  27  1  polymer  1  
WZ1  H61   H61   H  0  1  N  N  N  27.293  63.281  13.471   4.910   2.099  -0.592  H61  Z4R  28  1  polymer  1  
WZ1  H61A  H61A  H  0  0  N  N  N  26.171  64.473  14.226   4.964   1.508   1.086  H62  Z4R  29  1  polymer  1  
WZ1  HO61  HO61  H  0  0  N  N  N  24.773  62.902  13.734   6.867   0.797  -0.169  HO6  Z4R  30  1  polymer  1  
WZ1  H11   H11   H  0  1  N  N  N  25.761  68.123  11.942   2.380  -2.283   1.290  H1   Z4R  31  1  polymer  1  
WZ1  H71   H71   H  0  1  N  N  N  23.847  67.696  11.014   3.173  -3.321  -2.057  H51  Z4R  32  1  polymer  1  
WZ1  H71A  H71A  H  0  0  N  N  N  24.604  68.473   9.582   4.275  -2.544  -0.895  H52  Z4R  33  1  polymer  1  
WZ1  H71B  H71B  H  0  0  N  N  N  23.723  66.918   9.400   3.156  -3.815  -0.347  H53  Z4R  34  1  polymer  1  
WZ1  H21   H21   H  0  1  N  N  N  27.628  68.068  10.101   0.211  -1.203   0.687  H2   Z4R  35  1  polymer  1  
WZ1  HO21  HO21  H  0  0  N  N  N  28.574  67.718  12.777   1.147  -0.822   2.853  HO2  Z4R  36  1  polymer  1  
WZ1  H31   H31   H  0  1  N  N  N  28.025  65.738   9.807   1.029   0.220  -1.152  H3   Z4R  37  1  polymer  1  
WZ1  H12   H12   H  0  1  N  N  N  30.592  64.333   9.871  -1.602   0.175  -1.154  H1   MAN  38  2  polymer  1  
WZ1  H22   H22   H  0  1  N  N  N  32.782  65.729   9.875  -3.130   1.915   0.836  H2   MAN  39  2  polymer  1  
WZ1  H32   H32   H  0  1  N  N  N  32.479  67.434   8.352  -5.138   1.126  -0.357  H3   MAN  40  2  polymer  1  
WZ1  H42   H42   H  0  1  N  N  N  31.634  65.541   6.118  -5.070  -1.263   0.390  H4   MAN  41  2  polymer  1  
WZ1  H52   H52   H  0  1  N  N  N  29.983  67.430   7.886  -2.922  -2.122   1.331  H5   MAN  42  2  polymer  1  
WZ1  H62A  H62A  H  0  0  N  N  N  29.024  65.491   5.722  -2.639  -1.209  -1.565  H61  MAN  43  2  polymer  1  
WZ1  H62   H62   H  0  1  N  N  N  29.150  67.253   5.533  -3.635  -2.589  -1.043  H62  MAN  44  2  polymer  1  
WZ1  HO22  HO22  H  0  0  N  N  N  32.824  64.067   7.629  -2.192   3.070  -1.036  HO2  MAN  45  2  polymer  1  
WZ1  HO32  HO32  H  0  0  N  N  N  33.704  65.988   6.363  -4.076   0.642  -2.441  HO3  MAN  46  2  polymer  1  
WZ1  HO42  HO42  H  0  0  N  N  N  31.744  68.378   6.479  -5.254   0.473   2.020  HO4  MAN  47  2  polymer  1  
WZ1  HO62  HO62  H  0  0  N  N  N  27.872  66.658   7.893  -1.427  -3.266  -1.654  HO6  MAN  48  2  polymer  1  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WZ1  O41  C41   SING  N  N   1  
WZ1  C41  C51   SING  N  N   2  
WZ1  C41  C31   SING  N  N   3  
WZ1  C51  C61   SING  N  N   4  
WZ1  C51  O01   SING  N  N   5  
WZ1  C61  O61   SING  N  N   6  
WZ1  O01  C11   SING  N  N   7  
WZ1  C11  O11   SING  N  N   8  
WZ1  C11  C21   SING  N  N   9  
WZ1  O11  C71   SING  N  N  10  
WZ1  C21  O21   SING  N  N  11  
WZ1  C21  C31   SING  N  N  12  
WZ1  C31  S12   SING  N  N  13  
WZ1  S12  C12   SING  N  N  14  
WZ1  C12  O02   SING  N  N  15  
WZ1  C12  C22   SING  N  N  16  
WZ1  O02  C52   SING  N  N  17  
WZ1  C52  C62   SING  N  N  18  
WZ1  C52  C42   SING  N  N  19  
WZ1  C62  O62   SING  N  N  20  
WZ1  C42  O42   SING  N  N  21  
WZ1  C42  C32   SING  N  N  22  
WZ1  C32  O32   SING  N  N  23  
WZ1  C32  C22   SING  N  N  24  
WZ1  C22  O22   SING  N  N  25  
WZ1  O41  HO41  SING  N  N  26  
WZ1  C41  H41   SING  N  N  27  
WZ1  C51  H51   SING  N  N  28  
WZ1  C61  H61   SING  N  N  29  
WZ1  C61  H61A  SING  N  N  30  
WZ1  O61  HO61  SING  N  N  31  
WZ1  C11  H11   SING  N  N  32  
WZ1  C71  H71   SING  N  N  33  
WZ1  C71  H71A  SING  N  N  34  
WZ1  C71  H71B  SING  N  N  35  
WZ1  C21  H21   SING  N  N  36  
WZ1  O21  HO21  SING  N  N  37  
WZ1  C31  H31   SING  N  N  38  
WZ1  C12  H12   SING  N  N  39  
WZ1  C52  H52   SING  N  N  40  
WZ1  C62  H62   SING  N  N  41  
WZ1  C62  H62A  SING  N  N  42  
WZ1  O62  HO62  SING  N  N  43  
WZ1  C42  H42   SING  N  N  44  
WZ1  O42  HO42  SING  N  N  45  
WZ1  C32  H32   SING  N  N  46  
WZ1  O32  HO32  SING  N  N  47  
WZ1  C22  H22   SING  N  N  48  
WZ1  O22  HO22  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WZ1  SMILES            ACDLabs               10.04  "S(C1C(O)C(OC)OC(CO)C1O)C2OC(C(O)C(O)C2O)CO"  
WZ1  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](S[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H]1O"  
WZ1  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO)[CH](O)[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH]1O"  
WZ1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)S[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O"  
WZ1  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(C(O1)CO)O)SC2C(C(C(C(O2)CO)O)O)O)O"  
WZ1  InChI             InChI                 1.03   "InChI=1S/C13H24O10S/c1-21-12-10(20)11(7(17)5(3-15)22-12)24-13-9(19)8(18)6(16)4(2-14)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7-,8+,9+,10+,11+,12+,13-/m1/s1"  
WZ1  InChIKey          InChI                 1.03   SCFDSIKLIGFXRA-ZEEOCKJESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WZ1  "SYSTEMATIC NAME"  ACDLabs               10.04  "methyl 3-S-alpha-D-mannopyranosyl-3-thio-alpha-D-mannopyranoside"  
WZ1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5S,6R)-2-[(2R,3R,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-methoxy-oxan-4-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WZ1  "Create component"    2008-01-09  RCSB  
WZ1  "Modify descriptor"   2011-06-04  RCSB  
WZ1  "Other modification"  2020-07-03  RCSB  
WZ1  "Obsolete component"  2020-07-17  RCSB  
##
