data_A1D52
# 
_chem_comp.id                                    A1D52 
_chem_comp.name                                  "(13~{a}~{S})-6,7-dimethoxy-9,11,12,13,13~{a},14-hexahydrophenanthro[9,10-f]indolizin-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H23 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-04 
_chem_comp.pdbx_modified_date                    2025-02-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        349.423 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1D52 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Y55 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1D52 C7  C1  C 0 1 Y N N N N N 18.430 2.253 -3.347  -0.534 -1.897 0.002  C7  A1D52 1  
A1D52 C9  C2  C 0 1 Y N N N N N 17.760 2.217 -1.012  -0.125 -4.256 -0.016 C9  A1D52 2  
A1D52 C13 C3  C 0 1 Y N N N N N 16.778 2.790 -5.127  1.332  -0.275 0.004  C13 A1D52 3  
A1D52 C20 C4  C 0 1 N N N N N N 23.794 1.506 -6.251  -5.658 1.351  -0.217 C20 A1D52 4  
A1D52 C8  C5  C 0 1 Y N N N N N 18.725 2.071 -1.967  -1.008 -3.218 -0.005 C8  A1D52 5  
A1D52 C18 C6  C 0 1 N N S N N N 21.695 1.257 -5.061  -3.707 0.071  0.491  C18 A1D52 6  
A1D52 C16 C7  C 0 1 N N N N N N 12.905 3.982 -6.506  5.340  0.540  -0.014 C16 A1D52 7  
A1D52 C15 C8  C 0 1 Y N N N N N 15.174 3.334 -6.893  3.103  1.344  0.005  C15 A1D52 8  
A1D52 C10 C9  C 0 1 Y N N N N N 16.443 2.570 -1.392  1.251  -4.027 -0.022 C10 A1D52 9  
A1D52 C11 C10 C 0 1 Y N N N N N 16.124 2.739 -2.722  1.745  -2.738 -0.015 C11 A1D52 10 
A1D52 C5  C11 C 0 1 Y N N N N N 19.134 2.263 -5.692  -1.013 0.466  0.024  C5  A1D52 11 
A1D52 C2  C12 C 0 1 Y N N N N N 16.201 3.153 -7.864  2.159  2.378  0.018  C2  A1D52 12 
A1D52 C14 C13 C 0 1 Y N N N N N 15.472 3.147 -5.561  2.695  0.027  -0.002 C14 A1D52 13 
A1D52 C22 C14 C 0 1 N N N N N N 20.201 2.117 -6.757  -1.966 1.643  0.035  C22 A1D52 14 
A1D52 C1  C15 C 0 1 N N N N N N 16.724 2.971 -10.189 1.565  4.680  0.041  C1  A1D52 15 
A1D52 C3  C16 C 0 1 Y N N N N N 17.448 2.798 -7.451  0.811  2.097  0.025  C3  A1D52 16 
A1D52 C12 C17 C 0 1 Y N N N N N 17.107 2.589 -3.724  0.857  -1.661 -0.003 C12 A1D52 17 
A1D52 C17 C18 C 0 1 N N N N N N 20.848 1.736 -3.906  -2.925 -1.155 0.039  C17 A1D52 18 
A1D52 C19 C19 C 0 1 N N N N N N 23.219 1.378 -4.829  -5.214 -0.064 0.227  C19 A1D52 19 
A1D52 C21 C20 C 0 1 N N N N N N 22.581 1.683 -7.148  -4.359 2.195  -0.220 C21 A1D52 20 
A1D52 C4  C21 C 0 1 Y N N N N N 17.791 2.623 -6.089  0.377  0.763  0.016  C4  A1D52 21 
A1D52 C6  C22 C 0 1 Y N N N N N 19.446 2.086 -4.356  -1.449 -0.810 0.020  C6  A1D52 22 
A1D52 N1  N1  N 0 1 N N N N N N 21.547 2.167 -6.210  -3.287 1.196  -0.391 N1  A1D52 23 
A1D52 O1  O1  O 0 1 N N N N N N 15.799 3.330 -9.163  2.577  3.671  0.027  O1  A1D52 24 
A1D52 O2  O2  O 0 1 N N N N N N 15.464 2.723 -0.446  2.110  -5.080 -0.033 O2  A1D52 25 
A1D52 O3  O3  O 0 1 N N N N N N 13.967 3.694 -7.416  4.429  1.641  -0.000 O3  A1D52 26 
A1D52 H6  H1  H 0 1 N N N N N N 18.001 2.064 0.030   -0.497 -5.270 -0.021 H6  A1D52 27 
A1D52 H18 H2  H 0 1 N N N N N N 24.459 2.379 -6.322  -6.089 1.316  -1.217 H18 A1D52 28 
A1D52 H19 H3  H 0 1 N N N N N N 24.350 0.598 -6.527  -6.376 1.763  0.491  H19 A1D52 29 
A1D52 H5  H4  H 0 1 N N N N N N 19.731 1.813 -1.669  -2.070 -3.411 -0.001 H5  A1D52 30 
A1D52 H15 H5  H 0 1 N N N N N N 21.433 0.224 -5.334  -3.515 0.302  1.539  H15 A1D52 31 
A1D52 H11 H6  H 0 1 N N N N N N 12.001 4.255 -7.071  5.182  -0.073 0.873  H11 A1D52 32 
A1D52 H12 H7  H 0 1 N N N N N N 12.698 3.094 -5.891  5.171  -0.061 -0.907 H12 A1D52 33 
A1D52 H10 H8  H 0 1 N N N N N N 13.197 4.819 -5.855  6.364  0.916  -0.017 H10 A1D52 34 
A1D52 H8  H9  H 0 1 N N N N N N 15.111 2.989 -3.001  2.811  -2.563 -0.018 H8  A1D52 35 
A1D52 H9  H10 H 0 1 N N N N N N 14.691 3.275 -4.826  3.427  -0.767 -0.011 H9  A1D52 36 
A1D52 H22 H11 H 0 1 N N N N N N 20.086 2.933 -7.485  -2.028 2.052  1.044  H22 A1D52 37 
A1D52 H23 H12 H 0 1 N N N N N N 20.063 1.151 -7.264  -1.603 2.412  -0.647 H23 A1D52 38 
A1D52 H2  H13 H 0 1 N N N N N N 16.273 3.164 -11.174 0.951  4.566  0.934  H2  A1D52 39 
A1D52 H1  H14 H 0 1 N N N N N N 17.641 3.570 -10.082 2.033  5.665  0.047  H1  A1D52 40 
A1D52 H3  H15 H 0 1 N N N N N N 16.971 1.903 -10.102 0.939  4.581  -0.845 H3  A1D52 41 
A1D52 H4  H16 H 0 1 N N N N N N 18.212 2.642 -8.198  0.090  2.901  0.035  H4  A1D52 42 
A1D52 H13 H17 H 0 1 N N N N N N 21.316 2.629 -3.466  -3.099 -1.977 0.733  H13 A1D52 43 
A1D52 H14 H18 H 0 1 N N N N N N 20.792 0.940 -3.149  -3.247 -1.447 -0.961 H14 A1D52 44 
A1D52 H17 H19 H 0 1 N N N N N N 23.455 2.269 -4.228  -5.735 -0.358 1.137  H17 A1D52 45 
A1D52 H16 H20 H 0 1 N N N N N N 23.612 0.482 -4.326  -5.397 -0.787 -0.568 H16 A1D52 46 
A1D52 H20 H21 H 0 1 N N N N N N 22.777 2.423 -7.938  -4.362 2.899  -1.052 H20 A1D52 47 
A1D52 H21 H22 H 0 1 N N N N N N 22.284 0.728 -7.606  -4.243 2.721  0.727  H21 A1D52 48 
A1D52 H7  H24 H 0 1 N N N N N N 14.647 2.959 -0.870  2.354  -5.378 -0.919 H7  A1D52 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1D52 C1  O1  SING N N 1  
A1D52 O1  C2  SING N N 2  
A1D52 C2  C3  DOUB Y N 3  
A1D52 C3  C4  SING Y N 4  
A1D52 C4  C5  DOUB Y N 5  
A1D52 C5  C6  SING Y N 6  
A1D52 C6  C7  DOUB Y N 7  
A1D52 C7  C8  SING Y N 8  
A1D52 C8  C9  DOUB Y N 9  
A1D52 C9  C10 SING Y N 10 
A1D52 C10 O2  SING N N 11 
A1D52 C10 C11 DOUB Y N 12 
A1D52 C11 C12 SING Y N 13 
A1D52 C12 C13 DOUB Y N 14 
A1D52 C13 C14 SING Y N 15 
A1D52 C14 C15 DOUB Y N 16 
A1D52 C15 O3  SING N N 17 
A1D52 O3  C16 SING N N 18 
A1D52 C6  C17 SING N N 19 
A1D52 C17 C18 SING N N 20 
A1D52 C18 C19 SING N N 21 
A1D52 C19 C20 SING N N 22 
A1D52 C20 C21 SING N N 23 
A1D52 C21 N1  SING N N 24 
A1D52 N1  C22 SING N N 25 
A1D52 C2  C15 SING Y N 26 
A1D52 C18 N1  SING N N 27 
A1D52 C4  C13 SING Y N 28 
A1D52 C5  C22 SING N N 29 
A1D52 C7  C12 SING Y N 30 
A1D52 C9  H6  SING N N 31 
A1D52 C20 H18 SING N N 32 
A1D52 C20 H19 SING N N 33 
A1D52 C8  H5  SING N N 34 
A1D52 C18 H15 SING N N 35 
A1D52 C16 H11 SING N N 36 
A1D52 C16 H12 SING N N 37 
A1D52 C16 H10 SING N N 38 
A1D52 C11 H8  SING N N 39 
A1D52 C14 H9  SING N N 40 
A1D52 C22 H22 SING N N 41 
A1D52 C22 H23 SING N N 42 
A1D52 C1  H2  SING N N 43 
A1D52 C1  H1  SING N N 44 
A1D52 C1  H3  SING N N 45 
A1D52 C3  H4  SING N N 46 
A1D52 C17 H13 SING N N 47 
A1D52 C17 H14 SING N N 48 
A1D52 C19 H17 SING N N 49 
A1D52 C19 H16 SING N N 50 
A1D52 C21 H20 SING N N 51 
A1D52 C21 H21 SING N N 52 
A1D52 O2  H7  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1D52 InChI            InChI                1.06  "InChI=1S/C22H23NO3/c1-25-21-10-18-17-9-14(24)5-6-15(17)16-8-13-4-3-7-23(13)12-20(16)19(18)11-22(21)26-2/h5-6,9-11,13,24H,3-4,7-8,12H2,1-2H3/t13-/m0/s1" 
A1D52 InChIKey         InChI                1.06  DSYIHAGYTDJTNX-ZDUSSCGKSA-N                                                                                                                              
A1D52 SMILES_CANONICAL CACTVS               3.385 "COc1cc2c3CN4CCC[C@H]4Cc3c5ccc(O)cc5c2cc1OC"                                                                                                             
A1D52 SMILES           CACTVS               3.385 "COc1cc2c3CN4CCC[CH]4Cc3c5ccc(O)cc5c2cc1OC"                                                                                                              
A1D52 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2c3cc(ccc3c4c(c2cc1OC)CN5CCC[C@H]5C4)O"                                                                                                           
A1D52 SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cc2c3cc(ccc3c4c(c2cc1OC)CN5CCCC5C4)O"                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           A1D52 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(13~{a}~{S})-6,7-dimethoxy-9,11,12,13,13~{a},14-hexahydrophenanthro[9,10-f]indolizin-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1D52 "Create component" 2024-02-04 PDBC 
A1D52 "Initial release"  2025-02-19 RCSB 
# 
