data_Y72
# 
_chem_comp.id                                    Y72 
_chem_comp.name                                  "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-3-fluorothiophene-2-carbonyl}-L-glutamic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H22 F N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-09 
_chem_comp.pdbx_modified_date                    2023-09-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        479.482 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y72 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FJT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y72 C15 C1  C 0 1 Y N N -38.020 71.147 3.333 -0.993 2.631  -0.300 C15 Y72 1  
Y72 C17 C2  C 0 1 N N N -38.046 75.211 3.086 -3.337 -0.493 0.124  C17 Y72 2  
Y72 C20 C3  C 0 1 N N S -38.211 77.569 4.083 -5.602 -1.329 -0.209 C20 Y72 3  
Y72 C16 C4  C 0 1 Y N N -37.083 71.666 4.240 -0.304 1.616  0.233  C16 Y72 4  
Y72 C09 C5  C 0 1 Y N N -38.821 65.547 5.526 7.789  0.454  -0.175 C09 Y72 5  
Y72 C06 C6  C 0 1 Y N N -37.221 66.309 6.931 6.581  1.924  -1.342 C06 Y72 6  
Y72 O18 O1  O 0 1 N N N -38.170 75.603 1.977 -3.034 -1.582 0.577  O18 Y72 7  
Y72 C12 C7  C 0 1 Y N N -37.004 73.096 4.243 -1.027 0.460  0.430  C12 Y72 8  
Y72 C04 C8  C 0 1 N N N -37.799 65.880 3.384 6.168  -1.267 0.315  C04 Y72 9  
Y72 C02 C9  C 0 1 N N N -39.913 64.976 3.556 8.405  -1.416 1.040  C02 Y72 10 
Y72 C07 C10 C 0 1 Y N N -38.497 65.756 6.899 7.817  1.691  -0.856 C07 Y72 11 
Y72 C08 C11 C 0 1 Y N N -37.734 65.979 4.805 6.481  -0.032 -0.282 C08 Y72 12 
Y72 C13 C12 C 0 1 Y N N -37.878 73.713 3.332 -2.334 0.568  0.037  C13 Y72 13 
Y72 C21 C13 C 0 1 N N N -37.027 78.176 3.332 -6.998 -0.706 -0.136 C21 Y72 14 
Y72 C22 C14 C 0 1 N N N -36.380 79.326 4.105 -7.135 0.088  1.164  C22 Y72 15 
Y72 C23 C15 C 0 1 N N N -35.506 78.834 5.258 -8.509 0.701  1.236  C23 Y72 16 
Y72 C26 C16 C 0 1 N N N -39.512 77.917 3.360 -5.508 -2.210 -1.428 C26 Y72 17 
Y72 C29 C17 C 0 1 N N N -35.504 66.968 5.302 4.340  0.784  -1.355 C29 Y72 18 
Y72 C30 C18 C 0 1 N N N -35.412 68.450 5.659 3.488  1.313  -0.199 C30 Y72 19 
Y72 C31 C19 C 0 1 N N N -36.409 69.294 4.866 2.007  1.199  -0.564 C31 Y72 20 
Y72 C32 C20 C 0 1 N N N -36.228 70.784 5.148 1.155  1.728  0.592  C32 Y72 21 
Y72 F33 F1  F 0 1 N N N -36.156 73.794 5.052 -0.499 -0.666 0.956  F33 Y72 22 
Y72 N01 N1  N 0 1 N N N -39.902 65.047 4.877 8.715  -0.267 0.488  N01 Y72 23 
Y72 N03 N2  N 0 1 N N N -38.889 65.382 2.818 7.145  -1.934 0.968  N03 Y72 24 
Y72 N05 N3  N 0 1 Y N N -36.798 66.430 5.682 5.758  0.893  -1.006 N05 Y72 25 
Y72 N11 N4  N 0 1 N N N -41.083 64.436 2.887 9.379  -2.120 1.706  N11 Y72 26 
Y72 N19 N5  N 0 1 N N N -38.052 76.126 4.220 -4.597 -0.266 -0.297 N19 Y72 27 
Y72 O10 O2  O 0 1 N N N -36.738 66.299 2.572 5.040  -1.726 0.245  O10 Y72 28 
Y72 O24 O3  O 0 1 N N N -34.752 79.748 6.000 -8.857 1.447  2.297  O24 Y72 29 
Y72 O25 O4  O 0 1 N N N -35.359 77.462 5.498 -9.299 0.521  0.339  O25 Y72 30 
Y72 O27 O5  O 0 1 N N N -39.503 78.045 1.967 -4.686 -1.975 -2.282 O27 Y72 31 
Y72 O28 O6  O 0 1 N N N -40.546 78.529 4.084 -6.337 -3.257 -1.564 O28 Y72 32 
Y72 S14 S1  S 0 1 Y N N -38.724 72.473 2.559 -2.615 2.189  -0.585 S14 Y72 33 
Y72 H1  H1  H 0 1 N N N -38.246 70.105 3.163 -0.577 3.604  -0.517 H1  Y72 34 
Y72 H2  H2  H 0 1 N N N -38.247 78.021 5.085 -5.423 -1.925 0.686  H2  Y72 35 
Y72 H3  H3  H 0 1 N N N -36.672 66.590 7.818 6.289  2.795  -1.911 H3  Y72 36 
Y72 H4  H4  H 0 1 N N N -39.122 65.529 7.750 8.675  2.337  -0.967 H4  Y72 37 
Y72 H5  H5  H 0 1 N N N -36.273 77.392 3.167 -7.143 -0.040 -0.986 H5  Y72 38 
Y72 H6  H6  H 0 1 N N N -37.380 78.556 2.362 -7.749 -1.495 -0.161 H6  Y72 39 
Y72 H7  H7  H 0 1 N N N -35.756 79.910 3.413 -6.989 -0.578 2.014  H7  Y72 40 
Y72 H8  H8  H 0 1 N N N -37.174 79.968 4.513 -6.383 0.877  1.189  H8  Y72 41 
Y72 H9  H9  H 0 1 N N N -35.367 66.848 4.217 4.091  -0.261 -1.541 H9  Y72 42 
Y72 H10 H10 H 0 1 N N N -34.714 66.418 5.834 4.140  1.370  -2.252 H10 Y72 43 
Y72 H11 H11 H 0 1 N N N -34.394 68.805 5.441 3.688  0.727  0.698  H11 Y72 44 
Y72 H12 H12 H 0 1 N N N -35.620 68.570 6.732 3.737  2.358  -0.013 H12 Y72 45 
Y72 H13 H13 H 0 1 N N N -37.431 68.998 5.147 1.807  1.786  -1.460 H13 Y72 46 
Y72 H14 H14 H 0 1 N N N -36.257 69.112 3.792 1.758  0.154  -0.750 H14 Y72 47 
Y72 H15 H15 H 0 1 N N N -35.170 71.045 4.996 1.404  2.773  0.778  H15 Y72 48 
Y72 H16 H16 H 0 1 N N N -36.508 70.980 6.194 1.355  1.142  1.489  H16 Y72 49 
Y72 H17 H17 H 0 1 N N N -38.940 65.312 1.822 6.950  -2.786 1.387  H17 Y72 50 
Y72 H18 H18 H 0 1 N N N -41.867 64.124 3.424 10.280 -1.766 1.763  H18 Y72 51 
Y72 H19 H19 H 0 1 N N N -41.105 64.376 1.889 9.165  -2.971 2.119  H19 Y72 52 
Y72 H20 H20 H 0 1 N N N -37.942 75.745 5.138 -4.839 0.602  -0.657 H20 Y72 53 
Y72 H21 H21 H 0 1 N N N -34.199 79.279 6.614 -9.750 1.819  2.298  H21 Y72 54 
Y72 H22 H22 H 0 1 N N N -41.133 78.974 3.484 -6.239 -3.793 -2.363 H22 Y72 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y72 O27 C26 DOUB N N 1  
Y72 O18 C17 DOUB N N 2  
Y72 S14 C13 SING Y N 3  
Y72 S14 C15 SING Y N 4  
Y72 O10 C04 DOUB N N 5  
Y72 N03 C04 SING N N 6  
Y72 N03 C02 SING N N 7  
Y72 N11 C02 SING N N 8  
Y72 C17 C13 SING N N 9  
Y72 C17 N19 SING N N 10 
Y72 C21 C20 SING N N 11 
Y72 C21 C22 SING N N 12 
Y72 C13 C12 DOUB Y N 13 
Y72 C15 C16 DOUB Y N 14 
Y72 C26 C20 SING N N 15 
Y72 C26 O28 SING N N 16 
Y72 C04 C08 SING N N 17 
Y72 C02 N01 DOUB N N 18 
Y72 C20 N19 SING N N 19 
Y72 C22 C23 SING N N 20 
Y72 C16 C12 SING Y N 21 
Y72 C16 C32 SING N N 22 
Y72 C12 F33 SING N N 23 
Y72 C08 C09 DOUB Y N 24 
Y72 C08 N05 SING Y N 25 
Y72 C31 C32 SING N N 26 
Y72 C31 C30 SING N N 27 
Y72 N01 C09 SING N N 28 
Y72 C23 O25 DOUB N N 29 
Y72 C23 O24 SING N N 30 
Y72 C29 C30 SING N N 31 
Y72 C29 N05 SING N N 32 
Y72 C09 C07 SING Y N 33 
Y72 N05 C06 SING Y N 34 
Y72 C07 C06 DOUB Y N 35 
Y72 C15 H1  SING N N 36 
Y72 C20 H2  SING N N 37 
Y72 C06 H3  SING N N 38 
Y72 C07 H4  SING N N 39 
Y72 C21 H5  SING N N 40 
Y72 C21 H6  SING N N 41 
Y72 C22 H7  SING N N 42 
Y72 C22 H8  SING N N 43 
Y72 C29 H9  SING N N 44 
Y72 C29 H10 SING N N 45 
Y72 C30 H11 SING N N 46 
Y72 C30 H12 SING N N 47 
Y72 C31 H13 SING N N 48 
Y72 C31 H14 SING N N 49 
Y72 C32 H15 SING N N 50 
Y72 C32 H16 SING N N 51 
Y72 N03 H17 SING N N 52 
Y72 N11 H18 SING N N 53 
Y72 N11 H19 SING N N 54 
Y72 N19 H20 SING N N 55 
Y72 O24 H21 SING N N 56 
Y72 O28 H22 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y72 SMILES           ACDLabs              12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1scc(CCCCn2ccc3N=C(N)NC(=O)c32)c1F"                                                                                                                                          
Y72 InChI            InChI                1.06  "InChI=1S/C20H22FN5O6S/c21-14-10(9-33-16(14)18(30)23-12(19(31)32)4-5-13(27)28)3-1-2-7-26-8-6-11-15(26)17(29)25-20(22)24-11/h6,8-9,12H,1-5,7H2,(H,23,30)(H,27,28)(H,31,32)(H3,22,24,25,29)/t12-/m0/s1" 
Y72 InChIKey         InChI                1.06  HPZHEVFOCGGDJM-LBPRGKRZSA-N                                                                                                                                                                           
Y72 SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2ccn(CCCCc3csc(C(=O)N[C@@H](CCC(O)=O)C(O)=O)c3F)c2C(=O)N1"                                                                                                                                     
Y72 SMILES           CACTVS               3.385 "NC1=Nc2ccn(CCCCc3csc(C(=O)N[CH](CCC(O)=O)C(O)=O)c3F)c2C(=O)N1"                                                                                                                                       
Y72 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1N=C(NC2=O)N)CCCCc3csc(c3F)C(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                                     
Y72 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1N=C(NC2=O)N)CCCCc3csc(c3F)C(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y72 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-3-fluorothiophene-2-carbonyl}-L-glutamic acid"                        
Y72 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[4-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-3-fluoranyl-thiophen-2-yl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y72 "Create component" 2023-01-09 RCSB 
Y72 "Initial release"  2023-09-06 RCSB 
# 
