data_5Z3
#

_chem_comp.id                                   5Z3
_chem_comp.name                                 "6-{4-[4-chloro-3-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H14 Cl F3 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-28
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.756
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5Z3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7RME
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5Z3  C23   C1   C   0  1  N  N  N  110.768  -5.531  107.284   5.093  -0.170   0.937  C23   5Z3   1  
5Z3  C5    C2   C   0  1  N  N  N  109.153  -3.026  110.992   1.735   0.189   1.090  C5    5Z3   2  
5Z3  C10   C3   C   0  1  Y  N  N  105.491  -3.609  110.796  -1.782   0.984   0.272  C10   5Z3   3  
5Z3  C9    C4   C   0  1  N  N  N  108.798  -5.409  110.271   1.440   2.689   0.889  C9    5Z3   4  
5Z3  C8    C5   C   0  1  N  N  N  107.282  -5.189  110.250   0.089   2.425   0.216  C8    5Z3   5  
5Z3  C6    C6   C   0  1  N  N  N  107.756  -3.197  111.542   0.372   0.024   0.409  C6    5Z3   6  
5Z3  C1    C7   C   0  1  N  N  N  111.085  -5.352  108.590   4.338   0.387  -0.045  C1    5Z3   7  
5Z3  C11   C8   C   0  1  Y  N  N  105.021  -2.654  111.718  -2.364   1.921  -0.572  C11   5Z3   8  
5Z3  C12   C9   C   0  1  Y  N  N  103.657  -2.464  111.934  -3.650   1.727  -1.036  C12   5Z3   9  
5Z3  C13   C10  C   0  1  Y  N  N  102.721  -3.217  111.236  -4.359   0.600  -0.661  C13   5Z3  10  
5Z3  C14   C11  C   0  1  Y  N  N  103.153  -4.182  110.306  -3.783  -0.336   0.181  C14   5Z3  11  
5Z3  C15   C12  C   0  1  Y  N  N  104.523  -4.367  110.096  -2.497  -0.147   0.647  C15   5Z3  12  
5Z3  C18   C13  C   0  1  N  N  N  112.285  -7.460  108.741   5.037  -1.296  -1.561  C18   5Z3  13  
5Z3  C2    C14  C   0  1  N  N  N  110.689  -4.143  109.398   3.540   1.608   0.226  C2    5Z3  14  
5Z3  C21   C15  C   0  1  N  N  N  111.222  -6.730  106.606   5.872  -1.373   0.621  C21   5Z3  15  
5Z3  C24   C16  C   0  1  N  N  N  102.165  -5.019  109.521  -4.559  -1.562   0.588  C24   5Z3  16  
5Z3  F25   F1   F   0  1  N  N  N  101.364  -5.750  110.327  -3.773  -2.351   1.434  F25   5Z3  17  
5Z3  F26   F2   F   0  1  N  N  N  101.367  -4.263  108.725  -5.723  -1.175   1.259  F26   5Z3  18  
5Z3  F27   F3   F   0  1  N  N  N  102.761  -5.904  108.695  -4.900  -2.297  -0.552  F27   5Z3  19  
5Z3  N17   N1   N   0  1  N  N  N  111.816  -6.282  109.294   4.321  -0.191  -1.296  N17   5Z3  20  
5Z3  N20   N2   N   0  1  N  N  N  111.965  -7.620  107.397   5.810  -1.879  -0.628  N20   5Z3  21  
5Z3  N4    N3   N   0  1  N  N  N  109.603  -4.176  110.191   2.289   1.500   0.715  N4    5Z3  22  
5Z3  N7    N4   N   0  1  N  N  N  106.866  -3.814  110.559  -0.479   1.175   0.738  N7    5Z3  23  
5Z3  O19   O1   O   0  1  N  N  N  112.930  -8.282  109.391   4.994  -1.775  -2.678  O19   5Z3  24  
5Z3  O22   O2   O   0  1  N  N  N  110.981  -6.987  105.428   6.562  -1.905   1.471  O22   5Z3  25  
5Z3  O3    O3   O   0  1  N  N  N  111.415  -3.143  109.271   4.014   2.705   0.007  O3    5Z3  26  
5Z3  CL16  CL1  CL  0  0  N  N  N  101.007  -2.915  111.560  -5.976   0.359  -1.246  CL16  5Z3  27  
5Z3  H1    H1   H   0  1  N  N  N  110.185  -4.791  106.756   5.123   0.264   1.926  H1    5Z3  28  
5Z3  H2    H2   H   0  1  N  N  N  109.847  -2.893  111.835   1.612   0.139   2.172  H2    5Z3  29  
5Z3  H3    H3   H   0  1  N  N  N  109.172  -2.128  110.357   2.407  -0.603   0.761  H3    5Z3  30  
5Z3  H4    H4   H   0  1  N  N  N  109.063  -6.047  109.415   1.919   3.551   0.424  H4    5Z3  31  
5Z3  H5    H5   H   0  1  N  N  N  109.056  -5.926  111.207   1.289   2.882   1.951  H5    5Z3  32  
5Z3  H6    H6   H   0  1  N  N  N  106.911  -5.444  109.246  -0.590   3.250   0.429  H6    5Z3  33  
5Z3  H7    H7   H   0  1  N  N  N  106.826  -5.862  110.991   0.230   2.338  -0.861  H7    5Z3  34  
5Z3  H8    H8   H   0  1  N  N  N  107.356  -2.210  111.816   0.509  -0.029  -0.671  H8    5Z3  35  
5Z3  H9    H9   H   0  1  N  N  N  107.799  -3.836  112.436  -0.102  -0.892   0.761  H9    5Z3  36  
5Z3  H10   H10  H   0  1  N  N  N  105.732  -2.056  112.269  -1.810   2.801  -0.865  H10   5Z3  37  
5Z3  H11   H11  H   0  1  N  N  N  103.325  -1.726  112.649  -4.102   2.455  -1.692  H11   5Z3  38  
5Z3  H12   H12  H   0  1  N  N  N  104.851  -5.107  109.381  -2.047  -0.877   1.304  H12   5Z3  39  
5Z3  H13   H13  H   0  1  N  N  N  112.019  -6.096  110.255   3.782   0.207  -1.997  H13   5Z3  40  
5Z3  H14   H14  H   0  1  N  N  N  112.297  -8.451  106.950   6.318  -2.674  -0.852  H14   5Z3  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5Z3  O22  C21   DOUB  N  N   1  
5Z3  C21  C23   SING  N  N   2  
5Z3  C21  N20   SING  N  N   3  
5Z3  C23  C1    DOUB  N  N   4  
5Z3  N20  C18   SING  N  N   5  
5Z3  C1   N17   SING  N  N   6  
5Z3  C1   C2    SING  N  N   7  
5Z3  F27  C24   SING  N  N   8  
5Z3  F26  C24   SING  N  N   9  
5Z3  C18  N17   SING  N  N  10  
5Z3  C18  O19   DOUB  N  N  11  
5Z3  O3   C2    DOUB  N  N  12  
5Z3  C2   N4    SING  N  N  13  
5Z3  C24  C14   SING  N  N  14  
5Z3  C24  F25   SING  N  N  15  
5Z3  C15  C14   DOUB  Y  N  16  
5Z3  C15  C10   SING  Y  N  17  
5Z3  N4   C9    SING  N  N  18  
5Z3  N4   C5    SING  N  N  19  
5Z3  C8   C9    SING  N  N  20  
5Z3  C8   N7    SING  N  N  21  
5Z3  C14  C13   SING  Y  N  22  
5Z3  N7   C10   SING  N  N  23  
5Z3  N7   C6    SING  N  N  24  
5Z3  C10  C11   DOUB  Y  N  25  
5Z3  C5   C6    SING  N  N  26  
5Z3  C13  CL16  SING  N  N  27  
5Z3  C13  C12   DOUB  Y  N  28  
5Z3  C11  C12   SING  Y  N  29  
5Z3  C23  H1    SING  N  N  30  
5Z3  C5   H2    SING  N  N  31  
5Z3  C5   H3    SING  N  N  32  
5Z3  C9   H4    SING  N  N  33  
5Z3  C9   H5    SING  N  N  34  
5Z3  C8   H6    SING  N  N  35  
5Z3  C8   H7    SING  N  N  36  
5Z3  C6   H8    SING  N  N  37  
5Z3  C6   H9    SING  N  N  38  
5Z3  C11  H10   SING  N  N  39  
5Z3  C12  H11   SING  N  N  40  
5Z3  C15  H12   SING  N  N  41  
5Z3  N17  H13   SING  N  N  42  
5Z3  N20  H14   SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5Z3  SMILES            ACDLabs               12.01  "O=C(C1=CC(=O)NC(=O)N1)N1CCN(CC1)c1cc(c(Cl)cc1)C(F)(F)F"  
5Z3  InChI             InChI                 1.03   "InChI=1S/C16H14ClF3N4O3/c17-11-2-1-9(7-10(11)16(18,19)20)23-3-5-24(6-4-23)14(26)12-8-13(25)22-15(27)21-12/h1-2,7-8H,3-6H2,(H2,21,22,25,27)"  
5Z3  InChIKey          InChI                 1.03   CVDMNVBBLCPUMH-UHFFFAOYSA-N  
5Z3  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)c1cc(ccc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5Z3  SMILES            CACTVS                3.385  "FC(F)(F)c1cc(ccc1Cl)N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3"  
5Z3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)C(F)(F)F)Cl"  
5Z3  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1N2CCN(CC2)C(=O)C3=CC(=O)NC(=O)N3)C(F)(F)F)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5Z3  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-{4-[4-chloro-3-(trifluoromethyl)phenyl]piperazine-1-carbonyl}pyrimidine-2,4(1H,3H)-dione"  
5Z3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-[4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5Z3  "Create component"  2021-07-28  RCSB  
5Z3  "Initial release"   2021-11-10  RCSB  
##
