data_JD3
#

_chem_comp.id                                   JD3
_chem_comp.name                                 "(2S,3R)-2-azanyl-3-(1H-indol-3-yl)butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H14 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-20
_chem_comp.pdbx_modified_date                   2022-03-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       218.252
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JD3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EUZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JD3  C09  C1   C  0  1  Y  N  N  4.872  39.394  149.875  -0.585   1.786  -0.040  C09  JD3   1  
JD3  C11  C2   C  0  1  Y  N  N  6.519  38.130  150.567  -2.554   0.723   0.167  C11  JD3   2  
JD3  C13  C3   C  0  1  Y  N  N  7.395  39.284  152.486  -1.938  -1.582  -0.275  C13  JD3   3  
JD3  C15  C4   C  0  1  Y  N  N  8.398  37.201  151.786  -4.208  -1.009   0.212  C15  JD3   4  
JD3  C02  C5   C  0  1  N  N  N  2.444  40.692  151.954   3.267  -0.648   0.329  C02  JD3   5  
JD3  C04  C6   C  0  1  N  N  S  3.437  41.627  151.262   1.964   0.056   0.607  C04  JD3   6  
JD3  C06  C7   C  0  1  N  N  R  4.914  41.357  151.606   1.035  -0.097  -0.599  C06  JD3   7  
JD3  C07  C8   C  0  1  N  N  N  5.762  42.496  151.037   1.633   0.636  -1.801  C07  JD3   8  
JD3  C08  C9   C  0  1  Y  N  N  5.400  40.032  150.996  -0.314   0.491  -0.272  C08  JD3   9  
JD3  C12  C10  C  0  1  Y  N  N  6.468  39.209  151.434  -1.577  -0.240  -0.146  C12  JD3  10  
JD3  C14  C11  C  0  1  Y  N  N  8.353  38.284  152.658  -3.240  -1.955  -0.096  C14  JD3  11  
JD3  C16  C12  C  0  1  Y  N  N  7.486  37.119  150.740  -3.873   0.320   0.350  C16  JD3  12  
JD3  N05  N1   N  0  1  N  N  N  3.032  42.990  151.593   2.220   1.482   0.850  N05  JD3  13  
JD3  N10  N2   N  0  1  Y  N  N  5.550  38.281  149.650  -1.917   1.942   0.229  N10  JD3  14  
JD3  O01  O1   O  0  1  N  N  N  1.211  40.952  151.853   4.233  -0.014  -0.023  O01  JD3  15  
JD3  O03  O2   O  0  1  N  N  N  2.829  39.675  152.590   3.355  -1.980   0.473  O03  JD3  16  
JD3  H1   H1   H  0  1  N  N  N  4.042  39.752  149.284   0.142   2.584  -0.058  H1   JD3  17  
JD3  H2   H2   H  0  1  N  N  N  7.366  40.122  153.167  -1.190  -2.324  -0.516  H2   JD3  18  
JD3  H3   H3   H  0  1  N  N  N  9.139  36.427  151.921  -5.233  -1.319   0.350  H3   JD3  19  
JD3  H4   H4   H  0  1  N  N  N  3.322  41.486  150.177   1.494  -0.384   1.486  H4   JD3  20  
JD3  H5   H5   H  0  1  N  N  N  5.033  41.321  152.699   0.921  -1.155  -0.838  H5   JD3  21  
JD3  H6   H6   H  0  1  N  N  N  5.426  43.452  151.464   1.747   1.694  -1.561  H6   JD3  22  
JD3  H7   H7   H  0  1  N  N  N  6.819  42.330  151.294   2.608   0.210  -2.037  H7   JD3  23  
JD3  H8   H8   H  0  1  N  N  N  5.651  42.524  149.943   0.971   0.527  -2.660  H8   JD3  24  
JD3  H9   H9   H  0  1  N  N  N  9.061  38.351  153.470  -3.519  -2.993  -0.196  H9   JD3  25  
JD3  H10  H10  H  0  1  N  N  N  7.518  36.281  150.060  -4.633   1.049   0.590  H10  JD3  26  
JD3  H11  H11  H  0  1  N  N  N  2.070  43.120  151.354   2.554   1.937   0.014  H11  JD3  27  
JD3  H12  H12  H  0  1  N  N  N  3.155  43.146  152.573   1.395   1.941   1.207  H12  JD3  28  
JD3  H14  H14  H  0  1  N  N  N  5.367  37.642  148.903  -2.350   2.787   0.428  H14  JD3  29  
JD3  H15  H15  H  0  1  N  N  N  2.074  39.210  152.931   4.211  -2.386   0.283  H15  JD3  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JD3  N10  C09  SING  Y  N   1  
JD3  N10  C11  SING  Y  N   2  
JD3  C09  C08  DOUB  Y  N   3  
JD3  C11  C16  DOUB  Y  N   4  
JD3  C11  C12  SING  Y  N   5  
JD3  C16  C15  SING  Y  N   6  
JD3  C08  C12  SING  Y  N   7  
JD3  C08  C06  SING  N  N   8  
JD3  C07  C06  SING  N  N   9  
JD3  C04  N05  SING  N  N  10  
JD3  C04  C06  SING  N  N  11  
JD3  C04  C02  SING  N  N  12  
JD3  C12  C13  DOUB  Y  N  13  
JD3  C15  C14  DOUB  Y  N  14  
JD3  O01  C02  DOUB  N  N  15  
JD3  C02  O03  SING  N  N  16  
JD3  C13  C14  SING  Y  N  17  
JD3  C09  H1   SING  N  N  18  
JD3  C13  H2   SING  N  N  19  
JD3  C15  H3   SING  N  N  20  
JD3  C04  H4   SING  N  N  21  
JD3  C06  H5   SING  N  N  22  
JD3  C07  H6   SING  N  N  23  
JD3  C07  H7   SING  N  N  24  
JD3  C07  H8   SING  N  N  25  
JD3  C14  H9   SING  N  N  26  
JD3  C16  H10  SING  N  N  27  
JD3  N05  H11  SING  N  N  28  
JD3  N05  H12  SING  N  N  29  
JD3  N10  H14  SING  N  N  30  
JD3  O03  H15  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JD3  InChI             InChI                 1.03   "InChI=1S/C12H14N2O2/c1-7(11(13)12(15)16)9-6-14-10-5-3-2-4-8(9)10/h2-7,11,14H,13H2,1H3,(H,15,16)/t7-,11+/m1/s1"  
JD3  InChIKey          InChI                 1.03   CZSQAYAIWDEOSA-HQJQHLMTSA-N  
JD3  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]([C@H](N)C(O)=O)c1c[nH]c2ccccc12"  
JD3  SMILES            CACTVS                3.385  "C[CH]([CH](N)C(O)=O)c1c[nH]c2ccccc12"  
JD3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](c1c[nH]c2c1cccc2)[C@@H](C(=O)O)N"  
JD3  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1c[nH]c2c1cccc2)C(C(=O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          JD3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R})-2-azanyl-3-(1~{H}-indol-3-yl)butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JD3  "Create component"  2021-05-20  PDBJ  
JD3  "Initial release"   2022-03-16  RCSB  
##
