data_JT3
# 
_chem_comp.id                                    JT3 
_chem_comp.name                                  "[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H11 F5 N3 O5 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-09 
_chem_comp.pdbx_modified_date                    2023-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.349 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JT3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZSP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JT3 N1  N1  N 0 1 N N N 0.305  15.974 -53.648 7.167  0.271  0.693  N1  JT3 1  
JT3 N3  N2  N 0 1 Y N N 2.052  19.199 -53.682 3.700  0.855  1.887  N3  JT3 2  
JT3 C4  C1  C 0 1 Y N N 1.522  17.945 -53.818 4.895  0.694  1.227  C4  JT3 3  
JT3 C5  C2  C 0 1 Y N N 3.030  18.300 -55.445 3.299  1.309  -0.247 C5  JT3 4  
JT3 C6  C3  C 0 1 Y N N 2.956  19.426 -54.671 2.745  1.231  0.985  C6  JT3 5  
JT3 C7  C4  C 0 1 Y N N 3.133  19.138 -58.008 0.783  1.874  -1.225 C7  JT3 6  
JT3 C8  C5  C 0 1 Y N N 3.821  19.913 -58.944 0.025  0.715  -1.002 C8  JT3 7  
JT3 C10 C6  C 0 1 Y N N 1.739  20.811 -59.751 -1.873 2.086  -0.430 C10 JT3 8  
JT3 C13 C7  C 0 1 N N N 5.272  19.827 -59.093 0.632  -0.617 -1.187 C13 JT3 9  
JT3 C15 C8  C 0 1 Y N N 3.343  22.234 -61.697 -3.350 -0.122 0.003  C15 JT3 10 
JT3 C17 C9  C 0 1 Y N N 2.143  24.153 -62.481 -5.672 0.130  -0.555 C17 JT3 11 
JT3 C20 C10 C 0 1 Y N N 3.538  21.848 -63.002 -3.667 -0.049 1.353  C20 JT3 12 
JT3 C1  C11 C 0 1 N N N 0.534  17.227 -53.094 6.198  0.336  1.632  C1  JT3 13 
JT3 C2  C12 C 0 1 N N N 0.926  15.490 -54.727 6.889  0.550  -0.608 C2  JT3 14 
JT3 N2  N3  N 0 1 N N N 1.811  16.142 -55.401 5.696  0.887  -1.003 N2  JT3 15 
JT3 C3  C13 C 0 1 Y N N 2.122  17.381 -54.945 4.669  0.976  -0.125 C3  JT3 16 
JT3 S1  S1  S 0 1 N N N 4.011  18.099 -56.870 2.465  1.745  -1.736 S1  JT3 17 
JT3 C9  C14 C 0 1 Y N N 3.115  20.729 -59.816 -1.311 0.831  -0.602 C9  JT3 18 
JT3 C11 C15 C 0 1 Y N N 1.066  20.065 -58.808 -1.116 3.224  -0.647 C11 JT3 19 
JT3 C12 C16 C 0 1 Y N N 1.750  19.236 -57.937 0.202  3.122  -1.047 C12 JT3 20 
JT3 C14 C17 C 0 1 N N N 5.896  18.990 -59.900 0.518  -1.536 -0.237 C14 JT3 21 
JT3 P1  P1  P 0 1 N N N 7.603  18.680 -59.841 1.264  -3.174 -0.465 P1  JT3 22 
JT3 O1  O1  O 0 1 N N N 8.149  18.619 -61.224 2.255  -3.418 0.607  O1  JT3 23 
JT3 O2  O2  O 0 1 N N N 8.268  19.800 -59.053 0.116  -4.301 -0.400 O2  JT3 24 
JT3 O3  O3  O 0 1 N N N 7.899  17.321 -59.282 1.997  -3.235 -1.897 O3  JT3 25 
JT3 O4  O4  O 0 1 N N N -0.098 17.608 -52.095 6.444  0.091  2.801  O4  JT3 26 
JT3 O5  O5  O 0 1 N N N 3.886  21.439 -60.725 -2.056 -0.284 -0.384 O5  JT3 27 
JT3 C16 C18 C 0 1 Y N N 2.649  23.401 -61.439 -4.354 -0.035 -0.951 C16 JT3 28 
JT3 C18 C19 C 0 1 Y N N 2.349  23.759 -63.778 -5.988 0.197  0.792  C18 JT3 29 
JT3 C19 C20 C 0 1 Y N N 3.048  22.609 -64.042 -4.986 0.111  1.746  C19 JT3 30 
JT3 F1  F1  F 0 1 N N N 4.238  20.733 -63.257 -2.691 -0.133 2.282  F1  JT3 31 
JT3 F2  F2  F 0 1 N N N 3.270  22.252 -65.316 -5.296 0.176  3.059  F2  JT3 32 
JT3 F3  F3  F 0 1 N N N 1.871  24.487 -64.795 -7.275 0.346  1.177  F3  JT3 33 
JT3 F4  F4  F 0 1 N N N 1.443  25.270 -62.230 -6.650 0.214  -1.484 F4  JT3 34 
JT3 F5  F5  F 0 1 N N N 2.425  23.795 -60.170 -4.048 -0.111 -2.264 F5  JT3 35 
JT3 H1  H1  H 0 1 N N N -0.376 15.390 -53.206 8.070  0.027  0.950  H1  JT3 36 
JT3 H2  H2  H 0 1 N N N 1.810  19.851 -52.963 3.559  0.732  2.839  H2  JT3 37 
JT3 H3  H3  H 0 1 N N N 3.518  20.336 -54.820 1.709  1.428  1.218  H3  JT3 38 
JT3 H4  H4  H 0 1 N N N 1.197  21.452 -60.431 -2.903 2.176  -0.118 H4  JT3 39 
JT3 H5  H5  H 0 1 N N N 5.877  20.497 -58.500 1.170  -0.844 -2.096 H5  JT3 40 
JT3 H6  H6  H 0 1 N N N 0.672  14.493 -55.055 7.683  0.489  -1.337 H6  JT3 41 
JT3 H7  H7  H 0 1 N N N -0.010 20.128 -58.748 -1.559 4.198  -0.502 H7  JT3 42 
JT3 H8  H8  H 0 1 N N N 1.207  18.664 -57.200 0.782  4.016  -1.222 H8  JT3 43 
JT3 H9  H9  H 0 1 N N N 5.310  18.467 -60.641 -0.020 -1.309 0.672  H9  JT3 44 
JT3 H10 H10 H 0 1 N N N 8.904  20.241 -59.604 0.444  -5.203 -0.515 H10 JT3 45 
JT3 H11 H11 H 0 1 N N N 8.343  16.798 -59.939 1.406  -3.084 -2.648 H11 JT3 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JT3 F2  C19 SING N N 1  
JT3 F3  C18 SING N N 2  
JT3 C19 C18 DOUB Y N 3  
JT3 C19 C20 SING Y N 4  
JT3 C18 C17 SING Y N 5  
JT3 F1  C20 SING N N 6  
JT3 C20 C15 DOUB Y N 7  
JT3 C17 F4  SING N N 8  
JT3 C17 C16 DOUB Y N 9  
JT3 C15 C16 SING Y N 10 
JT3 C15 O5  SING N N 11 
JT3 C16 F5  SING N N 12 
JT3 O1  P1  DOUB N N 13 
JT3 O5  C9  SING N N 14 
JT3 C14 P1  SING N N 15 
JT3 C14 C13 DOUB N E 16 
JT3 P1  O3  SING N N 17 
JT3 P1  O2  SING N N 18 
JT3 C9  C10 DOUB Y N 19 
JT3 C9  C8  SING Y N 20 
JT3 C10 C11 SING Y N 21 
JT3 C13 C8  SING N N 22 
JT3 C8  C7  DOUB Y N 23 
JT3 C11 C12 DOUB Y N 24 
JT3 C7  C12 SING Y N 25 
JT3 C7  S1  SING N N 26 
JT3 S1  C5  SING N N 27 
JT3 C5  C3  SING Y N 28 
JT3 C5  C6  DOUB Y N 29 
JT3 N2  C3  SING N N 30 
JT3 N2  C2  DOUB N N 31 
JT3 C3  C4  DOUB Y N 32 
JT3 C2  N1  SING N N 33 
JT3 C6  N3  SING Y N 34 
JT3 C4  N3  SING Y N 35 
JT3 C4  C1  SING N N 36 
JT3 N1  C1  SING N N 37 
JT3 C1  O4  DOUB N N 38 
JT3 N1  H1  SING N N 39 
JT3 N3  H2  SING N N 40 
JT3 C6  H3  SING N N 41 
JT3 C10 H4  SING N N 42 
JT3 C13 H5  SING N N 43 
JT3 C2  H6  SING N N 44 
JT3 C11 H7  SING N N 45 
JT3 C12 H8  SING N N 46 
JT3 C14 H9  SING N N 47 
JT3 O2  H10 SING N N 48 
JT3 O3  H11 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JT3 InChI            InChI                1.06  "InChI=1S/C20H11F5N3O5PS/c21-12-13(22)15(24)19(16(25)14(12)23)33-9-2-1-3-10(8(9)4-5-34(30,31)32)35-11-6-26-18-17(11)27-7-28-20(18)29/h1-7,26H,(H,27,28,29)(H2,30,31,32)/b5-4+" 
JT3 InChIKey         InChI                1.06  HKNCSGKFKMZWJG-SNAWJCMRSA-N                                                                                                                                                    
JT3 SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)\C=C\c1c(Oc2c(F)c(F)c(F)c(F)c2F)cccc1Sc3c[nH]c4C(=O)NC=Nc34"                                                                                                       
JT3 SMILES           CACTVS               3.385 "O[P](O)(=O)C=Cc1c(Oc2c(F)c(F)c(F)c(F)c2F)cccc1Sc3c[nH]c4C(=O)NC=Nc34"                                                                                                         
JT3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)Sc2c[nH]c3c2N=CNC3=O)/C=C/P(=O)(O)O)Oc4c(c(c(c(c4F)F)F)F)F"                                                                                                       
JT3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)Sc2c[nH]c3c2N=CNC3=O)C=CP(=O)(O)O)Oc4c(c(c(c(c4F)F)F)F)F"                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           JT3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JT3 "Create component"  2022-05-09 PDBE 
JT3 "Modify descriptor" 2022-08-22 RCSB 
JT3 "Initial release"   2023-05-17 RCSB 
# 
