data_Y83
# 
_chem_comp.id                                    Y83 
_chem_comp.name                                  "tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}propan-2-yl]carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H37 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-25 
_chem_comp.pdbx_modified_date                    2017-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.722 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y83 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BDM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y83 C01 C1  C 0 1 N N N -17.626 -38.878 -8.334  3.939  3.598  -0.659 C01 Y83 1  
Y83 C02 C2  C 0 1 N N N -17.553 -37.796 -7.237  2.861  3.036  -1.588 C02 Y83 2  
Y83 C03 C3  C 0 1 N N N -17.735 -38.415 -5.828  1.483  3.499  -1.109 C03 Y83 3  
Y83 C04 C4  C 0 1 N N N -18.745 -36.788 -7.495  3.101  3.542  -3.012 C04 Y83 4  
Y83 C06 C5  C 0 1 N N N -16.285 -35.678 -7.109  2.724  0.979  -0.387 C06 Y83 5  
Y83 C09 C6  C 0 1 N N S -14.936 -34.413 -8.884  2.554  -1.027 0.987  C09 Y83 6  
Y83 C10 C7  C 0 1 N N N -13.766 -34.372 -7.838  1.169  -0.663 1.527  C10 Y83 7  
Y83 C12 C8  C 0 1 N N N -15.755 -32.534 -6.364  -1.650 -0.815 1.221  C12 Y83 8  
Y83 C13 C9  C 0 1 N N S -15.783 -31.097 -5.680  -2.840 -1.316 0.402  C13 Y83 9  
Y83 C15 C10 C 0 1 Y N N -13.748 -29.535 -5.390  -3.532 -3.488 -0.572 C15 Y83 10 
Y83 C16 C11 C 0 1 Y N N -14.121 -28.950 -4.158  -3.607 -4.874 -0.516 C16 Y83 11 
Y83 C17 C12 C 0 1 Y N N -13.194 -28.223 -3.378  -4.263 -5.570 -1.512 C17 Y83 12 
Y83 C18 C13 C 0 1 Y N N -11.858 -28.054 -3.798  -4.845 -4.888 -2.565 C18 Y83 13 
Y83 C19 C14 C 0 1 Y N N -11.470 -28.626 -5.018  -4.773 -3.509 -2.625 C19 Y83 14 
Y83 C20 C15 C 0 1 Y N N -12.406 -29.352 -5.797  -4.118 -2.807 -1.632 C20 Y83 15 
Y83 C21 C16 C 0 1 N N N -17.207 -30.441 -5.904  -4.118 -0.770 0.986  C21 Y83 16 
Y83 C24 C17 C 0 1 N N N -18.623 -28.531 -6.795  -5.742 1.023  1.275  C24 Y83 17 
Y83 C25 C18 C 0 1 Y N N -18.959 -28.313 -8.271  -5.939 2.443  0.812  C25 Y83 18 
Y83 C26 C19 C 0 1 Y N N -20.290 -28.118 -8.703  -6.633 2.710  -0.353 C26 Y83 19 
Y83 C28 C20 C 0 1 Y N N -19.711 -27.928 -10.956 -6.336 4.979  -0.088 C28 Y83 20 
Y83 C29 C21 C 0 1 Y N N -18.349 -28.109 -10.637 -5.637 4.790  1.089  C29 Y83 21 
Y83 C30 C22 C 0 1 Y N N -17.982 -28.287 -9.284  -5.431 3.499  1.553  C30 Y83 22 
Y83 C31 C23 C 0 1 N N N -15.041 -32.976 -9.570  3.625  -0.564 1.976  C31 Y83 23 
Y83 C32 C24 C 0 1 Y N N -16.341 -32.640 -10.286 4.979  -1.029 1.505  C32 Y83 24 
Y83 C33 C25 C 0 1 Y N N -16.426 -32.317 -11.646 5.613  -2.150 1.883  C33 Y83 25 
Y83 C35 C26 C 0 1 Y N N -18.590 -32.277 -10.850 6.996  -1.152 0.420  C35 Y83 26 
Y83 C36 C27 C 0 1 Y N N -17.709 -32.632 -9.748  5.849  -0.347 0.544  C36 Y83 27 
Y83 C37 C28 C 0 1 Y N N -18.340 -32.857 -8.512  5.745  0.836  -0.189 C37 Y83 28 
Y83 C38 C29 C 0 1 Y N N -19.738 -32.756 -8.324  6.760  1.207  -1.026 C38 Y83 29 
Y83 C39 C30 C 0 1 Y N N -20.567 -32.410 -9.414  7.894  0.417  -1.152 C39 Y83 30 
Y83 C40 C31 C 0 1 Y N N -19.987 -32.170 -10.671 8.017  -0.755 -0.438 C40 Y83 31 
Y83 N08 N1  N 0 1 N N N -16.215 -34.833 -8.278  2.763  -0.366 -0.304 N08 Y83 32 
Y83 N14 N2  N 0 1 N N N -14.691 -30.256 -6.207  -2.875 -2.781 0.437  N14 Y83 33 
Y83 N23 N3  N 0 1 N N N -17.317 -29.195 -6.563  -4.501 0.492  0.707  N23 Y83 34 
Y83 N27 N4  N 0 1 Y N N -20.663 -27.932 -9.989  -6.809 3.951  -0.765 N27 Y83 35 
Y83 N34 N5  N 0 1 Y N N -17.775 -32.095 -11.978 6.819  -2.242 1.242  N34 Y83 36 
Y83 O05 O1  O 0 1 N N N -16.269 -37.078 -7.298  2.917  1.586  -1.573 O05 Y83 37 
Y83 O07 O2  O 0 1 N N N -16.682 -35.224 -6.031  2.515  1.643  0.609  O07 Y83 38 
Y83 O22 O3  O 0 1 N N N -18.242 -30.993 -5.498  -4.801 -1.466 1.707  O22 Y83 39 
Y83 S11 S1  S 0 1 N N N -14.078 -33.324 -6.335  -0.105 -1.341 0.428  S11 Y83 40 
Y83 H1  H1  H 0 1 N N N -16.811 -39.602 -8.190  3.768  3.238  0.356  H1  Y83 41 
Y83 H2  H2  H 0 1 N N N -18.593 -39.398 -8.272  4.920  3.269  -1.000 H2  Y83 42 
Y83 H3  H3  H 0 1 N N N -17.526 -38.405 -9.322  3.897  4.687  -0.670 H3  Y83 43 
Y83 H4  H4  H 0 1 N N N -17.678 -37.622 -5.068  1.441  4.588  -1.120 H4  Y83 44 
Y83 H5  H5  H 0 1 N N N -18.716 -38.910 -5.769  0.715  3.099  -1.770 H5  Y83 45 
Y83 H6  H6  H 0 1 N N N -16.940 -39.154 -5.647  1.312  3.139  -0.094 H6  Y83 46 
Y83 H7  H7  H 0 1 N N N -18.729 -35.997 -6.731  4.082  3.213  -3.354 H7  Y83 47 
Y83 H8  H8  H 0 1 N N N -18.634 -36.337 -8.492  2.333  3.142  -3.674 H8  Y83 48 
Y83 H9  H9  H 0 1 N N N -19.701 -37.330 -7.442  3.059  4.631  -3.023 H9  Y83 49 
Y83 H10 H10 H 0 1 N N N -14.660 -35.133 -9.668  2.621  -2.107 0.857  H10 Y83 50 
Y83 H11 H11 H 0 1 N N N -13.576 -35.402 -7.501  1.048  -1.082 2.526  H11 Y83 51 
Y83 H12 H12 H 0 1 N N N -12.871 -33.981 -8.345  1.070  0.421  1.572  H12 Y83 52 
Y83 H13 H13 H 0 1 N N N -16.074 -32.429 -7.412  -1.678 0.274  1.275  H13 Y83 53 
Y83 H14 H14 H 0 1 N N N -16.459 -33.189 -5.830  -1.701 -1.229 2.228  H14 Y83 54 
Y83 H15 H15 H 0 1 N N N -15.642 -31.237 -4.598  -2.739 -0.980 -0.630 H15 Y83 55 
Y83 H16 H16 H 0 1 N N N -15.136 -29.061 -3.806  -3.152 -5.407 0.306  H16 Y83 56 
Y83 H17 H17 H 0 1 N N N -13.514 -27.788 -2.443  -4.321 -6.647 -1.469 H17 Y83 57 
Y83 H18 H18 H 0 1 N N N -11.153 -27.499 -3.196  -5.357 -5.435 -3.344 H18 Y83 58 
Y83 H19 H19 H 0 1 N N N -10.454 -28.513 -5.366  -5.228 -2.980 -3.449 H19 Y83 59 
Y83 H20 H20 H 0 1 N N N -12.083 -29.780 -6.734  -4.063 -1.729 -1.678 H20 Y83 60 
Y83 H21 H21 H 0 1 N N N -18.606 -27.551 -6.296  -5.683 1.000  2.363  H21 Y83 61 
Y83 H22 H22 H 0 1 N N N -19.412 -29.155 -6.350  -6.583 0.413  0.944  H22 Y83 62 
Y83 H23 H23 H 0 1 N N N -21.066 -28.118 -7.951  -7.035 1.893  -0.934 H23 Y83 63 
Y83 H24 H24 H 0 1 N N N -20.001 -27.784 -11.986 -6.500 5.981  -0.456 H24 Y83 64 
Y83 H25 H25 H 0 1 N N N -17.599 -28.112 -11.414 -5.252 5.636  1.638  H25 Y83 65 
Y83 H26 H26 H 0 1 N N N -16.940 -28.404 -9.024  -4.889 3.321  2.469  H26 Y83 66 
Y83 H27 H27 H 0 1 N N N -14.228 -32.901 -10.307 3.616  0.524  2.039  H27 Y83 67 
Y83 H28 H28 H 0 1 N N N -14.892 -32.222 -8.783  3.418  -0.986 2.960  H28 Y83 68 
Y83 H29 H29 H 0 1 N N N -15.592 -32.249 -12.329 5.229  -2.873 2.588  H29 Y83 69 
Y83 H30 H30 H 0 1 N N N -17.726 -33.120 -7.663  4.865  1.456  -0.096 H30 Y83 70 
Y83 H31 H31 H 0 1 N N N -20.170 -32.943 -7.352  6.679  2.122  -1.593 H31 Y83 71 
Y83 H32 H32 H 0 1 N N N -21.636 -32.331 -9.283  8.688  0.723  -1.817 H32 Y83 72 
Y83 H33 H33 H 0 1 N N N -20.615 -31.901 -11.508 8.903  -1.363 -0.543 H33 Y83 73 
Y83 H34 H34 H 0 1 N N N -17.068 -34.519 -8.694  2.930  -0.896 -1.099 H34 Y83 74 
Y83 H35 H35 H 0 1 N N N -14.140 -30.860 -6.783  -2.441 -3.259 1.160  H35 Y83 75 
Y83 H36 H36 H 0 1 N N N -16.484 -28.745 -6.884  -3.954 1.048  0.130  H36 Y83 76 
Y83 H37 H37 H 0 1 N N N -18.106 -31.844 -12.888 7.456  -2.965 1.353  H37 Y83 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y83 N34 C33 SING Y N 1  
Y83 N34 C35 SING Y N 2  
Y83 C33 C32 DOUB Y N 3  
Y83 C28 C29 DOUB Y N 4  
Y83 C28 N27 SING Y N 5  
Y83 C35 C40 DOUB Y N 6  
Y83 C35 C36 SING Y N 7  
Y83 C40 C39 SING Y N 8  
Y83 C29 C30 SING Y N 9  
Y83 C32 C36 SING Y N 10 
Y83 C32 C31 SING N N 11 
Y83 N27 C26 DOUB Y N 12 
Y83 C36 C37 DOUB Y N 13 
Y83 C31 C09 SING N N 14 
Y83 C39 C38 DOUB Y N 15 
Y83 C30 C25 DOUB Y N 16 
Y83 C09 N08 SING N N 17 
Y83 C09 C10 SING N N 18 
Y83 C26 C25 SING Y N 19 
Y83 C37 C38 SING Y N 20 
Y83 C01 C02 SING N N 21 
Y83 N08 C06 SING N N 22 
Y83 C25 C24 SING N N 23 
Y83 C10 S11 SING N N 24 
Y83 C04 C02 SING N N 25 
Y83 O05 C02 SING N N 26 
Y83 O05 C06 SING N N 27 
Y83 C02 C03 SING N N 28 
Y83 C06 O07 DOUB N N 29 
Y83 C24 N23 SING N N 30 
Y83 N23 C21 SING N N 31 
Y83 C12 S11 SING N N 32 
Y83 C12 C13 SING N N 33 
Y83 N14 C13 SING N N 34 
Y83 N14 C15 SING N N 35 
Y83 C21 C13 SING N N 36 
Y83 C21 O22 DOUB N N 37 
Y83 C20 C15 DOUB Y N 38 
Y83 C20 C19 SING Y N 39 
Y83 C15 C16 SING Y N 40 
Y83 C19 C18 DOUB Y N 41 
Y83 C16 C17 DOUB Y N 42 
Y83 C18 C17 SING Y N 43 
Y83 C01 H1  SING N N 44 
Y83 C01 H2  SING N N 45 
Y83 C01 H3  SING N N 46 
Y83 C03 H4  SING N N 47 
Y83 C03 H5  SING N N 48 
Y83 C03 H6  SING N N 49 
Y83 C04 H7  SING N N 50 
Y83 C04 H8  SING N N 51 
Y83 C04 H9  SING N N 52 
Y83 C09 H10 SING N N 53 
Y83 C10 H11 SING N N 54 
Y83 C10 H12 SING N N 55 
Y83 C12 H13 SING N N 56 
Y83 C12 H14 SING N N 57 
Y83 C13 H15 SING N N 58 
Y83 C16 H16 SING N N 59 
Y83 C17 H17 SING N N 60 
Y83 C18 H18 SING N N 61 
Y83 C19 H19 SING N N 62 
Y83 C20 H20 SING N N 63 
Y83 C24 H21 SING N N 64 
Y83 C24 H22 SING N N 65 
Y83 C26 H23 SING N N 66 
Y83 C28 H24 SING N N 67 
Y83 C29 H25 SING N N 68 
Y83 C30 H26 SING N N 69 
Y83 C31 H27 SING N N 70 
Y83 C31 H28 SING N N 71 
Y83 C33 H29 SING N N 72 
Y83 C37 H30 SING N N 73 
Y83 C38 H31 SING N N 74 
Y83 C39 H32 SING N N 75 
Y83 C40 H33 SING N N 76 
Y83 N08 H34 SING N N 77 
Y83 N14 H35 SING N N 78 
Y83 N23 H36 SING N N 79 
Y83 N34 H37 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y83 SMILES           ACDLabs              12.01 "CC(C)(C)OC(=O)NC(CSCC(C(=O)NCc1cnccc1)Nc2ccccc2)Cc4c3c(cccc3)nc4" 
Y83 InChI            InChI                1.03  
"InChI=1S/C31H37N5O3S/c1-31(2,3)39-30(38)36-25(16-23-19-33-27-14-8-7-13-26(23)27)20-40-21-28(35-24-11-5-4-6-12-24)29(37)34-18-22-10-9-15-32-17-22/h4-15,17,19,25,28,33,35H,16,18,20-21H2,1-3H3,(H,34,37)(H,36,38)/t25-,28+/m0/s1" 
Y83 InChIKey         InChI                1.03  YCHZAYWZVPKZNW-LBNVMWSVSA-N 
Y83 SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)N[C@H](CSC[C@@H](Nc1ccccc1)C(=O)NCc2cccnc2)Cc3c[nH]c4ccccc34" 
Y83 SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)N[CH](CSC[CH](Nc1ccccc1)C(=O)NCc2cccnc2)Cc3c[nH]c4ccccc34" 
Y83 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)CSC[C@H](C(=O)NCc3cccnc3)Nc4ccccc4" 
Y83 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)NC(Cc1c[nH]c2c1cccc2)CSCC(C(=O)NCc3cccnc3)Nc4ccccc4" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y83 "SYSTEMATIC NAME" ACDLabs              12.01 "tert-butyl [(2S)-1-(1H-indol-3-yl)-3-{[(2S)-3-oxo-2-(phenylamino)-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}propan-2-yl]carbamate"                      
Y83 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{tert}-butyl ~{N}-[(2~{S})-1-(1~{H}-indol-3-yl)-3-[(2~{S})-3-oxidanylidene-2-phenylazanyl-3-(pyridin-3-ylmethylamino)propyl]sulfanyl-propan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y83 "Create component" 2017-10-25 RCSB 
Y83 "Initial release"  2017-12-13 RCSB 
# 
