data_YB3
# 
_chem_comp.id                                    YB3 
_chem_comp.name                                  "2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-6-(4-methylpiperazin-1-yl)quinazoline" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 F N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-30 
_chem_comp.pdbx_modified_date                    2024-03-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.430 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YB3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R8P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YB3 C12  C1  C 0 1 Y N N N N N 10.448 29.569 33.770 3.070  1.405  -0.185 C12  YB3 1  
YB3 C13  C2  C 0 1 Y N N N N N 9.309  30.285 34.171 3.556  0.098  -0.309 C13  YB3 2  
YB3 C14  C3  C 0 1 Y N N N N N 8.422  30.771 33.197 2.689  -0.974 -0.353 C14  YB3 3  
YB3 C16  C4  C 0 1 Y N N N N N 9.801  29.808 31.451 0.824  0.583  -0.145 C16  YB3 4  
YB3 C19  C5  C 0 1 Y N N N N N 9.041  29.990 29.224 -1.326 -0.246 -0.119 C19  YB3 5  
YB3 C21  C6  C 0 1 Y N N N N N 7.757  30.943 30.863 0.376  -1.798 -0.315 C21  YB3 6  
YB3 C22  C7  C 0 1 N N N N N N 8.254  29.074 37.361 6.876  -1.323 0.491  C22  YB3 7  
YB3 C23  C8  C 0 1 N N N N N N 9.487  29.577 36.578 5.381  -1.046 0.662  C23  YB3 8  
YB3 C26  C9  C 0 1 N N N N N N 7.046  31.154 36.799 7.169  0.867  -0.497 C26  YB3 9  
YB3 C1   C10 C 0 1 Y N N N N N 9.174  29.667 27.802 -2.783 0.012  -0.036 C1   YB3 10 
YB3 C2   C11 C 0 1 Y N N N N N 10.334 28.939 27.367 -3.260 1.339  0.090  C2   YB3 11 
YB3 C3   C12 C 0 1 Y N N N N N 10.441 28.633 26.030 -4.598 1.565  0.166  C3   YB3 12 
YB3 C5   C13 C 0 1 Y N N N N N 9.472  28.993 25.125 -5.492 0.472  0.117  C5   YB3 13 
YB3 N6   N1  N 0 1 Y N N N N N 8.401  29.685 25.648 -5.004 -0.803 -0.005 N6   YB3 14 
YB3 C7   C14 C 0 1 Y N N N N N 8.161  30.074 26.953 -3.662 -1.027 -0.086 C7   YB3 15 
YB3 C8   C15 C 0 1 Y N N N N N 7.583  29.926 24.569 -6.083 -1.645 -0.025 C8   YB3 16 
YB3 C9   C16 C 0 1 Y N N N N N 8.218  29.374 23.486 -7.189 -0.877 0.083  C9   YB3 17 
YB3 C10  C17 C 0 1 N N N N N N 7.650  29.428 22.095 -8.610 -1.380 0.108  C10  YB3 18 
YB3 N11  N2  N 0 1 Y N N N N N 9.405  28.785 23.827 -6.814 0.401  0.174  N11  YB3 19 
YB3 C15  C18 C 0 1 Y N N N N N 8.660  30.516 31.844 1.309  -0.745 -0.272 C15  YB3 20 
YB3 C17  C19 C 0 1 Y N N N N N 10.700 29.338 32.413 1.735  1.651  -0.099 C17  YB3 21 
YB3 N18  N3  N 0 1 Y N N N N N 10.022 29.569 30.104 -0.497 0.780  -0.073 N18  YB3 22 
YB3 N20  N4  N 0 1 Y N N N N N 7.941  30.683 29.561 -0.905 -1.505 -0.237 N20  YB3 23 
YB3 N24  N5  N 0 1 N N N N N N 9.047  30.501 35.519 4.933  -0.123 -0.390 N24  YB3 24 
YB3 C25  C20 C 0 1 N N N N N N 8.279  31.653 36.023 5.674  1.145  -0.326 C25  YB3 25 
YB3 N27  N6  N 0 1 N N N N N N 7.379  30.185 37.917 7.617  -0.056 0.555  N27  YB3 26 
YB3 C28  C21 C 0 1 N N N N N N 8.110  30.906 39.034 9.066  -0.288 0.470  C28  YB3 27 
YB3 F4   F1  F 0 1 N N N N N N 11.521 27.970 25.594 -5.070 2.825  0.287  F4   YB3 28 
YB3 H12  H1  H 0 1 N N N N N N 11.135 29.194 34.514 3.766  2.230  -0.152 H12  YB3 29 
YB3 H14  H2  H 0 1 N N N N N N 7.555  31.342 33.494 3.070  -1.980 -0.450 H14  YB3 30 
YB3 H21  H3  H 0 1 N N N N N N 6.883  31.501 31.165 0.703  -2.823 -0.411 H21  YB3 31 
YB3 H22A H4  H 0 0 N N N N N N 7.643  28.458 36.685 7.217  -1.985 1.287  H22A YB3 32 
YB3 H22B H5  H 0 0 N N N N N N 8.606  28.458 38.201 7.050  -1.797 -0.475 H22B YB3 33 
YB3 H23B H6  H 0 0 N N N N N N 10.009 28.721 36.125 4.826  -1.981 0.586  H23B YB3 34 
YB3 H23A H7  H 0 0 N N N N N N 10.169 30.102 37.264 5.204  -0.597 1.639  H23A YB3 35 
YB3 H26A H8  H 0 0 N N N N N N 6.535  32.025 37.235 7.346  0.418  -1.474 H26A YB3 36 
YB3 H26B H9  H 0 0 N N N N N N 6.372  30.649 36.092 7.724  1.802  -0.421 H26B YB3 37 
YB3 H2   H10 H 0 1 N N N N N N 11.099 28.641 28.069 -2.566 2.165  0.127  H2   YB3 38 
YB3 H7   H11 H 0 1 N N N N N N 7.290  30.628 27.270 -3.292 -2.037 -0.182 H7   YB3 39 
YB3 H8   H12 H 0 1 N N N N N N 6.635  30.444 24.574 -6.056 -2.721 -0.112 H8   YB3 40 
YB3 H10C H13 H 0 0 N N N N N N 8.335  28.922 21.399 -9.001 -1.415 -0.908 H10C YB3 41 
YB3 H10B H14 H 0 0 N N N N N N 6.673  28.924 22.078 -8.633 -2.380 0.541  H10B YB3 42 
YB3 H10A H15 H 0 0 N N N N N N 7.526  30.478 21.790 -9.222 -0.709 0.711  H10A YB3 43 
YB3 H17  H16 H 0 1 N N N N N N 11.585 28.799 32.110 1.376  2.665  -0.003 H17  YB3 44 
YB3 H25A H17 H 0 0 N N N N N N 8.915  32.252 36.692 5.500  1.619  0.641  H25A YB3 45 
YB3 H25B H18 H 0 0 N N N N N N 7.952  32.273 35.176 5.333  1.806  -1.122 H25B YB3 46 
YB3 H28C H20 H 0 0 N N N N N N 8.346  30.194 39.838 9.300  -0.782 -0.473 H28C YB3 47 
YB3 H28B H21 H 0 0 N N N N N N 9.042  31.339 38.642 9.590  0.666  0.520  H28B YB3 48 
YB3 H28A H22 H 0 0 N N N N N N 7.472  31.709 39.431 9.382  -0.920 1.300  H28A YB3 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YB3 C10 C9   SING N N 1  
YB3 C9  N11  SING Y N 2  
YB3 C9  C8   DOUB Y N 3  
YB3 N11 C5   DOUB Y N 4  
YB3 C8  N6   SING Y N 5  
YB3 C5  N6   SING Y N 6  
YB3 C5  C3   SING Y N 7  
YB3 F4  C3   SING N N 8  
YB3 N6  C7   SING Y N 9  
YB3 C3  C2   DOUB Y N 10 
YB3 C7  C1   DOUB Y N 11 
YB3 C2  C1   SING Y N 12 
YB3 C1  C19  SING N N 13 
YB3 C19 N20  DOUB Y N 14 
YB3 C19 N18  SING Y N 15 
YB3 N20 C21  SING Y N 16 
YB3 N18 C16  DOUB Y N 17 
YB3 C21 C15  DOUB Y N 18 
YB3 C16 C15  SING Y N 19 
YB3 C16 C17  SING Y N 20 
YB3 C15 C14  SING Y N 21 
YB3 C17 C12  DOUB Y N 22 
YB3 C14 C13  DOUB Y N 23 
YB3 C12 C13  SING Y N 24 
YB3 C13 N24  SING N N 25 
YB3 N24 C25  SING N N 26 
YB3 N24 C23  SING N N 27 
YB3 C25 C26  SING N N 28 
YB3 C23 C22  SING N N 29 
YB3 C26 N27  SING N N 30 
YB3 C22 N27  SING N N 31 
YB3 N27 C28  SING N N 32 
YB3 C12 H12  SING N N 33 
YB3 C14 H14  SING N N 34 
YB3 C21 H21  SING N N 35 
YB3 C22 H22A SING N N 36 
YB3 C22 H22B SING N N 37 
YB3 C23 H23B SING N N 38 
YB3 C23 H23A SING N N 39 
YB3 C26 H26A SING N N 40 
YB3 C26 H26B SING N N 41 
YB3 C2  H2   SING N N 42 
YB3 C7  H7   SING N N 43 
YB3 C8  H8   SING N N 44 
YB3 C10 H10C SING N N 45 
YB3 C10 H10B SING N N 46 
YB3 C10 H10A SING N N 47 
YB3 C17 H17  SING N N 48 
YB3 C25 H25A SING N N 49 
YB3 C25 H25B SING N N 50 
YB3 C28 H28C SING N N 51 
YB3 C28 H28B SING N N 52 
YB3 C28 H28A SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YB3 InChI            InChI                1.06  "InChI=1S/C21H21FN6/c1-14-12-28-13-16(10-18(22)21(28)24-14)20-23-11-15-9-17(3-4-19(15)25-20)27-7-5-26(2)6-8-27/h3-4,9-13H,5-8H2,1-2H3" 
YB3 InChIKey         InChI                1.06  BAUHPLMKUXWNJQ-UHFFFAOYSA-N                                                                                                            
YB3 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2ccc3nc(ncc3c2)c4cn5cc(C)nc5c(F)c4"                                                                                       
YB3 SMILES           CACTVS               3.385 "CN1CCN(CC1)c2ccc3nc(ncc3c2)c4cn5cc(C)nc5c(F)c4"                                                                                       
YB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cn2cc(cc(c2n1)F)c3ncc4cc(ccc4n3)N5CCN(CC5)C"                                                                                       
YB3 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cn2cc(cc(c2n1)F)c3ncc4cc(ccc4n3)N5CCN(CC5)C"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           YB3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(8-fluoranyl-2-methyl-imidazo[1,2-a]pyridin-6-yl)-6-(4-methylpiperazin-1-yl)quinazoline" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YB3 "Create component" 2023-11-30 PDBE 
YB3 "Initial release"  2024-03-06 RCSB 
# 
