data_3X4
# 
_chem_comp.id                                    3X4 
_chem_comp.name                                  "N~6~-{N-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)acetyl]-2-methyl-D-alanyl}-D-lysine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H26 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-02 
_chem_comp.pdbx_modified_date                    2015-11-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        418.444 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X3V 
_chem_comp.pdbx_subcomponent_list                "51X AIB DLY" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3X4 C3  C3  C 0 1 N N N -20.439 45.790 17.815 1.963  -0.649 -0.101 C3   51X 1  
3X4 C4  C4  C 0 1 N N N -21.754 45.658 18.649 2.400  0.696  -0.620 C4   51X 2  
3X4 C5  C5  C 0 1 N N N -23.842 47.074 19.009 4.367  1.416  0.722  C5   51X 3  
3X4 C6  C6  C 0 1 Y N N -24.783 47.777 18.199 5.839  1.413  0.589  C6   51X 4  
3X4 C7  C7  C 0 1 Y N N -25.903 48.486 18.524 6.884  1.835  1.396  C7   51X 5  
3X4 C8  C8  C 0 1 Y N N -26.660 49.074 17.507 8.192  1.684  0.961  C8   51X 6  
3X4 C9  C9  C 0 1 Y N N -26.257 48.930 16.186 8.460  1.115  -0.270 C9   51X 7  
3X4 C10 C10 C 0 1 Y N N -25.133 48.221 15.863 7.425  0.689  -1.087 C10  51X 8  
3X4 C11 C11 C 0 1 Y N N -24.368 47.624 16.880 6.113  0.833  -0.666 C11  51X 9  
3X4 C12 C12 C 0 1 N N N -23.207 46.854 16.860 4.798  0.503  -1.254 C12  51X 10 
3X4 O   O4  O 0 1 N N N -19.577 44.921 17.970 2.771  -1.393 0.415  O    51X 11 
3X4 N1  N4  N 0 1 N N N -22.869 46.500 18.176 3.836  0.867  -0.386 N1   51X 12 
3X4 O1  O5  O 0 1 N N N -22.435 46.450 15.829 4.615  -0.014 -2.338 O1   51X 13 
3X4 O2  O6  O 0 1 N N N -23.794 46.918 20.350 3.742  1.837  1.673  O2   51X 14 
3X4 N   N3  N 0 1 N N N -20.303 46.833 17.004 0.674  -1.027 -0.208 N    AIB 15 
3X4 C1  C1  C 0 1 N N N -19.127 47.087 16.138 0.248  -2.335 0.297  CA   AIB 16 
3X4 C13 C14 C 0 1 N N N -17.854 47.292 16.985 -1.229 -2.510 0.056  C    AIB 17 
3X4 O3  O3  O 0 1 N N N -16.830 47.723 16.462 -1.673 -3.605 -0.215 O    AIB 18 
3X4 C2  C2  C 0 1 N N N -18.918 45.904 15.193 1.018  -3.438 -0.432 CB1  AIB 19 
3X4 C   C20 C 0 1 N N N -19.380 48.362 15.338 0.534  -2.419 1.798  CB2  AIB 20 
3X4 N3  N1  N 0 1 N N N -14.793 45.577 16.813 -8.472 -0.141 0.781  N    DLY 21 
3X4 C18 C17 C 0 1 N N R -15.866 44.598 16.850 -7.904 0.720  -0.265 CA   DLY 22 
3X4 C24 C16 C 0 1 N N N -15.699 43.598 15.716 -8.582 2.066  -0.230 C    DLY 23 
3X4 O6  O2  O 0 1 N N N -16.772 43.467 14.983 -9.167 2.422  0.765  O    DLY 24 
3X4 C17 C18 C 0 1 N N N -15.913 43.892 18.209 -6.404 0.898  -0.020 CB   DLY 25 
3X4 C16 C19 C 0 1 N N N -15.512 44.747 19.415 -5.698 -0.450 -0.178 CG   DLY 26 
3X4 C15 C13 C 0 1 N N N -16.566 45.738 19.926 -4.199 -0.272 0.066  CD   DLY 27 
3X4 C14 C15 C 0 1 N N N -16.756 47.037 19.156 -3.492 -1.620 -0.092 CE   DLY 28 
3X4 N2  N2  N 0 1 N N N -17.916 46.978 18.278 -2.056 -1.449 0.142  NZ   DLY 29 
3X4 O7  O1  O 0 1 N N N -14.659 42.993 15.520 -8.536 2.868  -1.306 OXT  DLY 30 
3X4 H4  H4  H 0 1 N N N -22.079 44.608 18.614 2.197  0.756  -1.689 H4   51X 31 
3X4 H5  H5  H 0 1 N N N -21.530 45.938 19.689 1.852  1.482  -0.101 H5   51X 32 
3X4 H6  H6  H 0 1 N N N -26.201 48.592 19.557 6.681  2.281  2.358  H6   51X 33 
3X4 H7  H7  H 0 1 N N N -27.551 49.636 17.746 9.007  2.013  1.589  H7   51X 34 
3X4 H8  H8  H 0 1 N N N -26.841 49.386 15.400 9.483  1.004  -0.597 H8   51X 35 
3X4 H9  H9  H 0 1 N N N -24.834 48.120 14.830 7.641  0.246  -2.048 H9   51X 36 
3X4 H27 H27 H 0 1 N N N -21.050 47.497 16.975 0.027  -0.432 -0.620 H    AIB 37 
3X4 H1  H1  H 0 1 N N N -18.737 44.992 15.781 0.815  -3.377 -1.501 HB11 AIB 38 
3X4 H2  H2  H 0 1 N N N -19.816 45.768 14.572 2.087  -3.311 -0.258 HB12 AIB 39 
3X4 H3  H3  H 0 1 N N N -18.051 46.101 14.545 0.702  -4.411 -0.056 HB13 AIB 40 
3X4 H24 H24 H 0 1 N N N -19.529 49.205 16.028 0.218  -3.392 2.173  HB21 AIB 41 
3X4 H25 H25 H 0 1 N N N -18.514 48.566 14.691 1.602  -2.292 1.972  HB22 AIB 42 
3X4 H26 H26 H 0 1 N N N -20.279 48.233 14.718 -0.014 -1.633 2.317  HB23 AIB 43 
3X4 H16 H16 H 0 1 N N N -14.911 46.230 17.561 -8.080 -1.070 0.738  H    DLY 44 
3X4 H17 H17 H 0 1 N N N -13.914 45.111 16.912 -8.339 0.265  1.696  H2   DLY 45 
3X4 H15 H15 H 0 1 N N N -16.825 45.117 16.706 -8.061 0.259  -1.240 HA   DLY 46 
3X4 H19 H19 H 0 1 N N N -16.942 43.540 18.372 -6.000 1.607  -0.743 HB2  DLY 47 
3X4 H20 H20 H 0 1 N N N -15.233 43.029 18.165 -6.243 1.277  0.989  HB3  DLY 48 
3X4 H21 H21 H 0 1 N N N -15.264 44.065 20.242 -5.859 -0.828 -1.188 HG2  DLY 49 
3X4 H22 H22 H 0 1 N N N -14.618 45.323 19.135 -6.103 -1.159 0.544  HG3  DLY 50 
3X4 H10 H10 H 0 1 N N N -16.291 46.006 20.957 -4.037 0.107  1.076  HD2  DLY 51 
3X4 H11 H11 H 0 1 N N N -17.533 45.215 19.929 -3.794 0.437  -0.656 HD3  DLY 52 
3X4 H12 H12 H 0 1 N N N -15.859 47.226 18.549 -3.897 -2.329 0.631  HE2  DLY 53 
3X4 H13 H13 H 0 1 N N N -16.893 47.860 19.873 -3.654 -1.998 -1.101 HE3  DLY 54 
3X4 H23 H23 H 0 1 N N N -18.794 46.690 18.661 -1.701 -0.573 0.359  HZ2  DLY 55 
3X4 H14 H14 H 0 1 N N N -14.760 42.426 14.764 -8.986 3.721  -1.236 HXT  DLY 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3X4 O6  C24 DOUB N N 1  
3X4 C2  C1  SING N N 2  
3X4 C   C1  SING N N 3  
3X4 O7  C24 SING N N 4  
3X4 C24 C18 SING N N 5  
3X4 O1  C12 DOUB N N 6  
3X4 C10 C9  DOUB Y N 7  
3X4 C10 C11 SING Y N 8  
3X4 C1  C13 SING N N 9  
3X4 C1  N   SING N N 10 
3X4 C9  C8  SING Y N 11 
3X4 O3  C13 DOUB N N 12 
3X4 N3  C18 SING N N 13 
3X4 C18 C17 SING N N 14 
3X4 C12 C11 SING N N 15 
3X4 C12 N1  SING N N 16 
3X4 C11 C6  DOUB Y N 17 
3X4 C13 N2  SING N N 18 
3X4 N   C3  SING N N 19 
3X4 C8  C7  DOUB Y N 20 
3X4 C3  O   DOUB N N 21 
3X4 C3  C4  SING N N 22 
3X4 N1  C4  SING N N 23 
3X4 N1  C5  SING N N 24 
3X4 C6  C7  SING Y N 25 
3X4 C6  C5  SING N N 26 
3X4 C17 C16 SING N N 27 
3X4 N2  C14 SING N N 28 
3X4 C5  O2  DOUB N N 29 
3X4 C14 C15 SING N N 30 
3X4 C16 C15 SING N N 31 
3X4 C2  H1  SING N N 32 
3X4 C2  H2  SING N N 33 
3X4 C2  H3  SING N N 34 
3X4 C4  H4  SING N N 35 
3X4 C4  H5  SING N N 36 
3X4 C7  H6  SING N N 37 
3X4 C8  H7  SING N N 38 
3X4 C9  H8  SING N N 39 
3X4 C10 H9  SING N N 40 
3X4 C15 H10 SING N N 41 
3X4 C15 H11 SING N N 42 
3X4 C14 H12 SING N N 43 
3X4 C14 H13 SING N N 44 
3X4 O7  H14 SING N N 45 
3X4 C18 H15 SING N N 46 
3X4 N3  H16 SING N N 47 
3X4 N3  H17 SING N N 48 
3X4 C17 H19 SING N N 49 
3X4 C17 H20 SING N N 50 
3X4 C16 H21 SING N N 51 
3X4 C16 H22 SING N N 52 
3X4 N2  H23 SING N N 53 
3X4 C   H24 SING N N 54 
3X4 C   H25 SING N N 55 
3X4 C   H26 SING N N 56 
3X4 N   H27 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3X4 SMILES           ACDLabs              12.01 "C(C(NCCCCC(C(O)=O)N)=O)(NC(=O)CN2C(=O)c1ccccc1C2=O)(C)C"                                                                                                                             
3X4 InChI            InChI                1.03  "InChI=1S/C20H26N4O6/c1-20(2,19(30)22-10-6-5-9-14(21)18(28)29)23-15(25)11-24-16(26)12-7-3-4-8-13(12)17(24)27/h3-4,7-8,14H,5-6,9-11,21H2,1-2H3,(H,22,30)(H,23,25)(H,28,29)/t14-/m1/s1" 
3X4 InChIKey         InChI                1.03  HSKHXKLBWCBTSW-CQSZACIVSA-N                                                                                                                                                           
3X4 SMILES_CANONICAL CACTVS               3.385 "CC(C)(NC(=O)CN1C(=O)c2ccccc2C1=O)C(=O)NCCCC[C@@H](N)C(O)=O"                                                                                                                          
3X4 SMILES           CACTVS               3.385 "CC(C)(NC(=O)CN1C(=O)c2ccccc2C1=O)C(=O)NCCCC[CH](N)C(O)=O"                                                                                                                            
3X4 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(C(=O)NCCCC[C@H](C(=O)O)N)NC(=O)CN1C(=O)c2ccccc2C1=O"                                                                                                                           
3X4 SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)(C(=O)NCCCCC(C(=O)O)N)NC(=O)CN1C(=O)c2ccccc2C1=O"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3X4 "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-{N-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)acetyl]-2-methyl-D-alanyl}-D-lysine"                              
3X4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-2-azanyl-6-[[2-[2-[1,3-bis(oxidanylidene)isoindol-2-yl]ethanoylamino]-2-methyl-propanoyl]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3X4 "Create component"         2014-12-02 RCSB 
3X4 "Modify subcomponent list" 2015-07-14 RCSB 
3X4 "Initial release"          2015-11-11 RCSB 
# 
