data_5S4
# 
_chem_comp.id                                    5S4 
_chem_comp.name                                  "[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" 
_chem_comp.type                                  PEPTIDE-LIKE 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H33 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        440.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ES8 
_chem_comp.pdbx_subcomponent_list                "2JD BAL EDN VAL" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5S4 C10 C1  C 0 1 N N N N N N -117.305 111.931 27.782 2.729   1.841  0.045  C16  2JD 1  
5S4 O27 O6  O 0 1 N N N N N N -118.026 111.556 26.873 2.652   2.522  1.046  O3   2JD 2  
5S4 C08 C11 C 0 1 N N R N N N -116.406 113.109 27.564 4.075   1.556  -0.570 C17  2JD 3  
5S4 O09 O3  O 0 1 N N N N N N -116.910 113.890 26.516 3.894   0.981  -1.866 O4   2JD 4  
5S4 C05 C8  C 0 1 N N N N N N -114.998 112.620 27.173 4.845   0.578  0.319  C18  2JD 5  
5S4 C04 C7  C 0 1 N N N N N N -115.140 111.659 25.989 6.147   0.173  -0.377 C19  2JD 6  
5S4 C06 C9  C 0 1 N N N N N N -114.123 113.835 26.755 5.169   1.249  1.655  C20  2JD 7  
5S4 C07 C10 C 0 1 N N N N N N -114.341 111.905 28.339 3.991   -0.667 0.567  C21  2JD 8  
5S4 P02 P1  P 0 1 N N N N N N -113.135 110.220 25.248 8.286   -1.375 0.035  P    2JD 9  
5S4 O03 O2  O 0 1 N N N N N N -113.902 111.606 25.296 6.866   -0.741 0.454  O2P  2JD 10 
5S4 O01 O1  O 0 1 N N N N N N -113.236 109.519 26.584 9.237   -0.287 -0.286 O3P  2JD 11 
5S4 O29 O7  O 0 1 N N N N N N -113.715 109.344 24.167 8.863   -2.251 1.256  OXT  2JD 12 
5S4 N11 N1  N 0 1 N N N N N N -117.305 111.253 29.075 1.612   1.335  -0.513 N    BAL 13 
5S4 C12 C12 C 0 1 N N N N N N -118.144 110.120 29.353 0.317   1.512  0.149  CB   BAL 14 
5S4 C13 C2  C 0 1 N N N N N N -119.615 110.495 29.134 -0.779  0.847  -0.687 CA   BAL 15 
5S4 C14 C13 C 0 1 N N N N N N -120.731 109.705 29.889 -2.110  1.029  -0.006 C    BAL 16 
5S4 O26 O5  O 0 1 N N N N N N -121.899 109.953 29.648 -2.177  1.631  1.045  O    BAL 17 
5S4 N18 N3  N 0 1 N N N N N N -121.705 108.368 33.990 -6.913  0.212  -0.076 NAA  EDN 18 
5S4 C17 C3  C 0 1 N N N N N N -121.950 108.920 32.673 -5.618  0.035  -0.738 CAB  EDN 19 
5S4 C16 C14 C 0 1 N N N N N N -121.461 107.992 31.561 -4.522  0.700  0.098  CAC  EDN 20 
5S4 N15 N2  N 0 1 N N N N N N -120.385 108.699 30.859 -3.228  0.523  -0.564 NAD  EDN 21 
5S4 N24 N4  N 0 1 N N N N N N -124.844 108.663 34.244 -10.442 -0.303 -0.931 N    VAL 22 
5S4 C20 C4  C 0 1 N N S N N N -123.832 109.563 34.640 -9.362  -0.112 0.047  CA   VAL 23 
5S4 C19 C15 C 0 1 N N N N N N -122.645 108.693 35.020 -8.030  -0.294 -0.635 C    VAL 24 
5S4 O25 O4  O 0 1 N N N N N N -122.530 108.269 36.142 -7.964  -0.896 -1.686 O    VAL 25 
5S4 C21 C5  C 0 1 N N N N N N -124.352 110.388 35.796 -9.504  -1.140 1.171  CB   VAL 26 
5S4 C22 C6  C 0 1 N N N N N N -125.576 111.155 35.375 -10.856 -0.956 1.863  CG1  VAL 27 
5S4 C23 C16 C 0 1 N N N N N N -123.312 111.363 36.351 -9.419  -2.551 0.585  CG2  VAL 28 
5S4 H19 H19 H 0 1 N N N N N N -116.336 113.695 28.492 4.637   2.485  -0.661 H15  2JD 29 
5S4 H20 H20 H 0 1 N N N N N N -117.613 113.422 26.081 3.400   0.149  -1.862 H16  2JD 30 
5S4 H11 H11 H 0 1 N N N N N N -115.928 112.020 25.312 5.916   -0.305 -1.329 H17  2JD 31 
5S4 H21 H21 H 0 1 N N N N N N -116.698 111.590 29.795 1.665   0.854  -1.354 H    BAL 32 
5S4 H23 H23 H 0 1 N N N N N N -117.999 109.806 30.397 0.349   1.052  1.137  HB3  BAL 33 
5S4 H22 H22 H 0 1 N N N N N N -117.874 109.292 28.680 0.103   2.576  0.250  HB2  BAL 34 
5S4 H1  H1  H 0 1 N N N N N N -119.722 111.552 29.420 -0.810  1.306  -1.675 HA1  BAL 35 
5S4 H2  H2  H 0 1 N N N N N N -119.817 110.384 28.058 -0.564  -0.217 -0.788 HA2  BAL 36 
5S4 H27 H27 H 0 1 N N N N N N -120.913 107.785 34.172 -6.966  0.693  0.765  HAA2 EDN 37 
5S4 H3  H3  H 0 1 N N N N N N -121.425 109.883 32.588 -5.403  -1.028 -0.839 HAB1 EDN 38 
5S4 H4  H4  H 0 1 N N N N N N -123.031 109.081 32.551 -5.650  0.495  -1.727 HAB2 EDN 39 
5S4 H25 H25 H 0 1 N N N N N N -122.284 107.769 30.866 -4.737  1.764  0.198  HAC1 EDN 40 
5S4 H26 H26 H 0 1 N N N N N N -121.080 107.054 31.991 -4.491  0.241  1.086  HAC2 EDN 41 
5S4 H24 H24 H 0 1 N N N N N N -119.427 108.486 31.051 -3.175  0.042  -1.405 HAD2 EDN 42 
5S4 H31 H31 H 0 1 N N N N N N -125.661 109.175 33.979 -10.407 -1.228 -1.332 H    VAL 43 
5S4 H32 H32 H 0 1 N N N N N N -124.523 108.122 33.467 -11.343 -0.123 -0.513 H2   VAL 44 
5S4 H5  H5  H 0 1 N N N N N N -123.549 110.228 33.811 -9.422  0.893  0.464  HA   VAL 45 
5S4 H6  H6  H 0 1 N N N N N N -124.638 109.701 36.606 -8.703  -0.999 1.896  HB   VAL 46 
5S4 H7  H7  H 0 1 N N N N N N -125.945 111.751 36.223 -11.658 -1.097 1.137  HG11 VAL 47 
5S4 H8  H8  H 0 1 N N N N N N -125.320 111.824 34.540 -10.958 -1.688 2.664  HG12 VAL 48 
5S4 H9  H9  H 0 1 N N N N N N -126.358 110.451 35.054 -10.917 0.050  2.280  HG13 VAL 49 
5S4 H28 H28 H 0 1 N N N N N N -123.749 111.931 37.185 -8.456  -2.683 0.093  HG21 VAL 50 
5S4 H29 H29 H 0 1 N N N N N N -122.437 110.801 36.709 -9.521  -3.284 1.386  HG22 VAL 51 
5S4 H30 H30 H 0 1 N N N N N N -123.001 112.059 35.557 -10.220 -2.693 -0.140 HG23 VAL 52 
5S4 OP3 OP3 O 0 1 N Y N N N N ?        ?       ?      8.092   -2.316 -1.257 OP3  5S4 53 
5S4 H10 H10 H 0 1 N N N N N N -115.402 110.656 26.356 6.755   1.060  -0.554 H10  5S4 54 
5S4 H12 H12 H 0 1 N N N N N N -114.022 114.525 27.606 4.242   1.467  2.186  H12  5S4 55 
5S4 H13 H13 H 0 1 N N N N N N -113.127 113.482 26.449 5.784   0.581  2.258  H13  5S4 56 
5S4 H14 H14 H 0 1 N N N N N N -114.601 114.359 25.914 5.710   2.178  1.473  H14  5S4 57 
5S4 H15 H15 H 0 1 N N N N N N -114.241 112.599 29.186 3.761   -1.145 -0.385 H15  5S4 58 
5S4 H16 H16 H 0 1 N N N N N N -114.961 111.047 28.639 4.540   -1.364 1.200  H16  5S4 59 
5S4 H17 H17 H 0 1 N N N N N N -113.345 111.550 28.037 3.064   -0.379 1.062  H17  5S4 60 
5S4 H18 H18 H 0 1 N N N N N N -114.025 108.531 24.549 9.719   -2.664 1.073  H18  5S4 61 
5S4 H33 H33 H 0 1 N Y N N N N ?        ?       ?      7.481   -3.053 -1.119 H33  5S4 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5S4 O29 P02 SING N N 1  
5S4 P02 O03 SING N N 2  
5S4 P02 O01 DOUB N N 3  
5S4 O03 C04 SING N N 4  
5S4 C04 C05 SING N N 5  
5S4 O09 C08 SING N N 6  
5S4 C06 C05 SING N N 7  
5S4 O27 C10 DOUB N N 8  
5S4 C05 C08 SING N N 9  
5S4 C05 C07 SING N N 10 
5S4 C08 C10 SING N N 11 
5S4 C10 N11 SING N N 12 
5S4 N11 C12 SING N N 13 
5S4 C13 C12 SING N N 14 
5S4 C13 C14 SING N N 15 
5S4 O26 C14 DOUB N N 16 
5S4 C14 N15 SING N N 17 
5S4 N15 C16 SING N N 18 
5S4 C16 C17 SING N N 19 
5S4 C17 N18 SING N N 20 
5S4 N18 C19 SING N N 21 
5S4 N24 C20 SING N N 22 
5S4 C20 C19 SING N N 23 
5S4 C20 C21 SING N N 24 
5S4 C19 O25 DOUB N N 25 
5S4 C22 C21 SING N N 26 
5S4 C21 C23 SING N N 27 
5S4 C13 H1  SING N N 28 
5S4 C13 H2  SING N N 29 
5S4 C17 H3  SING N N 30 
5S4 C17 H4  SING N N 31 
5S4 C20 H5  SING N N 32 
5S4 C21 H6  SING N N 33 
5S4 C22 H7  SING N N 34 
5S4 C22 H8  SING N N 35 
5S4 C22 H9  SING N N 36 
5S4 C04 H11 SING N N 37 
5S4 C08 H19 SING N N 38 
5S4 O09 H20 SING N N 39 
5S4 N11 H21 SING N N 40 
5S4 C12 H22 SING N N 41 
5S4 C12 H23 SING N N 42 
5S4 N15 H24 SING N N 43 
5S4 C16 H25 SING N N 44 
5S4 C16 H26 SING N N 45 
5S4 N18 H27 SING N N 46 
5S4 C23 H28 SING N N 47 
5S4 C23 H29 SING N N 48 
5S4 C23 H30 SING N N 49 
5S4 N24 H31 SING N N 50 
5S4 N24 H32 SING N N 51 
5S4 P02 OP3 SING N N 52 
5S4 C04 H10 SING N N 53 
5S4 C06 H12 SING N N 54 
5S4 C06 H13 SING N N 55 
5S4 C06 H14 SING N N 56 
5S4 C07 H15 SING N N 57 
5S4 C07 H16 SING N N 58 
5S4 C07 H17 SING N N 59 
5S4 O29 H18 SING N N 60 
5S4 OP3 H33 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5S4 InChI            InChI                1.03  "InChI=1S/C16H33N4O8P/c1-10(2)12(17)14(23)20-8-7-18-11(21)5-6-19-15(24)13(22)16(3,4)9-28-29(25,26)27/h10,12-13,22H,5-9,17H2,1-4H3,(H,18,21)(H,19,24)(H,20,23)(H2,25,26,27)/t12-,13-/m0/s1" 
5S4 InChIKey         InChI                1.03  MFHZIFARQCIIMR-STQMWFEESA-N                                                                                                                                                                
5S4 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](N)C(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                          
5S4 SMILES           CACTVS               3.385 "CC(C)[CH](N)C(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                            
5S4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(C)[C@@H](C(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)N"                                                                                                                          
5S4 SMILES           "OpenEye OEToolkits" 2.0.4 "CC(C)C(C(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)N"                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           5S4 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5S4 "Create component" 2015-11-19 RCSB 
5S4 "Initial release"  2016-01-20 RCSB 
5S4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5S4 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
