data_DG4
#

_chem_comp.id                                   DG4
_chem_comp.name                                 "phosphono (2S)-2-oxidanyl-3-phosphonooxy-propanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C3 H8 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "glycerate 1,3-biphosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-12-18
_chem_comp.pdbx_modified_date                   2021-05-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       266.037
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DG4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7C5Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DG4  O2P  O1   O  0  1  N  N  N  -20.075  -3.530  4.438  -3.448  -0.449   1.497  O2P  DG4   1  
DG4  P1   P1   P  0  1  N  N  N  -20.032  -2.864  5.805  -3.400  -0.569   0.022  P1   DG4   2  
DG4  O4P  O2   O  0  1  N  N  N  -20.240  -3.870  6.913  -3.855  -2.052  -0.410  O4P  DG4   3  
DG4  O3P  O3   O  0  1  N  N  N  -18.613  -2.325  5.999  -4.395   0.511  -0.637  O3P  DG4   4  
DG4  O1P  O4   O  0  1  N  N  N  -21.307  -1.792  5.883  -1.898  -0.298  -0.489  O1P  DG4   5  
DG4  C1   C1   C  0  1  N  N  N  -22.467  -2.014  6.705  -1.328   0.860  -0.120  C1   DG4   6  
DG4  O1   O5   O  0  1  N  N  N  -22.994  -1.045  7.137  -1.941   1.643   0.566  O1   DG4   7  
DG4  C2   C2   C  0  1  N  N  S  -23.018  -3.443  7.046   0.076   1.183  -0.562  C2   DG4   8  
DG4  O2   O6   O  0  1  N  N  N  -22.177  -3.833  8.100   0.414   2.507  -0.144  O2   DG4   9  
DG4  C3   C3   C  0  1  N  N  N  -24.472  -3.810  7.512   1.051   0.186   0.068  C3   DG4  10  
DG4  O5P  O7   O  0  1  N  N  N  -25.466  -2.808  7.491   2.366   0.419  -0.440  O5P  DG4  11  
DG4  P2   P2   P  0  1  N  N  N  -25.799  -2.038  6.056   3.646  -0.449   0.007  P2   DG4  12  
DG4  O8P  O8   O  0  1  N  N  N  -25.093  -0.675  6.071   4.928  -0.000  -0.857  O8P  DG4  13  
DG4  O7P  O9   O  0  1  N  N  N  -27.188  -1.641  5.854   3.940  -0.204   1.571  O7P  DG4  14  
DG4  O6P  O10  O  0  1  N  N  N  -25.393  -3.031  4.952   3.373  -1.885  -0.224  O6P  DG4  15  
DG4  H5   H1   H  0  1  N  N  N  -20.359  -4.735  6.538  -4.752  -2.284  -0.134  H5   DG4  16  
DG4  H6   H2   H  0  1  N  N  N  -18.090  -2.526  5.232  -4.414   0.489  -1.604  H6   DG4  17  
DG4  H1   H3   H  0  1  N  N  N  -22.801  -4.077  6.174   0.140   1.117  -1.648  H1   DG4  18  
DG4  H2   H4   H  0  1  N  N  N  -22.421  -4.702  8.396   0.378   2.639   0.813  H2   DG4  19  
DG4  H4   H5   H  0  1  N  N  N  -24.823  -4.627  6.864   1.052   0.314   1.151  H4   DG4  20  
DG4  H3   H6   H  0  1  N  N  N  -24.398  -4.170  8.549   0.741  -0.830  -0.177  H3   DG4  21  
DG4  H7   H7   H  0  1  N  N  N  -24.244  -0.762  6.488   5.737  -0.483  -0.640  H7   DG4  22  
DG4  H8   H8   H  0  1  N  N  N  -27.535  -2.082  5.087   4.128   0.717   1.796  H8   DG4  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DG4  O2P  P1   DOUB  N  N   1  
DG4  O6P  P2   DOUB  N  N   2  
DG4  P1   O1P  SING  N  N   3  
DG4  P1   O3P  SING  N  N   4  
DG4  P1   O4P  SING  N  N   5  
DG4  O7P  P2   SING  N  N   6  
DG4  O1P  C1   SING  N  N   7  
DG4  P2   O8P  SING  N  N   8  
DG4  P2   O5P  SING  N  N   9  
DG4  C1   C2   SING  N  N  10  
DG4  C1   O1   DOUB  N  N  11  
DG4  C2   C3   SING  N  N  12  
DG4  C2   O2   SING  N  N  13  
DG4  O5P  C3   SING  N  N  14  
DG4  O4P  H5   SING  N  N  15  
DG4  O3P  H6   SING  N  N  16  
DG4  C2   H1   SING  N  N  17  
DG4  O2   H2   SING  N  N  18  
DG4  C3   H4   SING  N  N  19  
DG4  C3   H3   SING  N  N  20  
DG4  O8P  H7   SING  N  N  21  
DG4  O7P  H8   SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DG4  InChI             InChI                 1.03   "InChI=1S/C3H8O10P2/c4-2(1-12-14(6,7)8)3(5)13-15(9,10)11/h2,4H,1H2,(H2,6,7,8)(H2,9,10,11)/t2-/m0/s1"  
DG4  InChIKey          InChI                 1.03   LJQLQCAXBUHEAZ-REOHCLBHSA-N  
DG4  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H](CO[P](O)(O)=O)C(=O)O[P](O)(O)=O"  
DG4  SMILES            CACTVS                3.385  "O[CH](CO[P](O)(O)=O)C(=O)O[P](O)(O)=O"  
DG4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@@H](C(=O)OP(=O)(O)O)O)OP(=O)(O)O"  
DG4  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C(C(=O)OP(=O)(O)O)O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          DG4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "phosphono (2~{S})-2-oxidanyl-3-phosphonooxy-propanoate"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DG4
_pdbx_chem_comp_synonyms.name        "glycerate 1,3-biphosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DG4  "Create component"               2008-12-18  PDBJ  
DG4  "Modify descriptor"              2011-06-04  RCSB  
DG4  "Modify model coordinates code"  2017-11-16  PDBJ  
DG4  "Modify model coordinates code"  2020-06-04  PDBJ  
DG4  "Modify synonyms"                2020-06-04  PDBJ  
DG4  "Modify synonyms"                2021-03-13  RCSB  
DG4  "Initial release"                2021-05-26  RCSB  
##
