data_H84
#

_chem_comp.id                                   H84
_chem_comp.name                                 "2'-deoxy-5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 Br2 N5 O11 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta, gamma dATP analogue"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-14
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       647.001
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H84
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6CR3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H84  N1     N1   N   0  1  Y  N  N   9.773   8.526   8.319  -8.865  -2.414  -0.748  N1     H84   1  
H84  C2     C1   C   0  1  Y  N  N   8.637   8.528   7.641  -8.387  -1.671  -1.730  C2     H84   2  
H84  N3     N2   N   0  1  Y  N  N   7.475   8.237   8.228  -7.339  -0.889  -1.579  N3     H84   3  
H84  C4     C2   C   0  1  Y  N  N   7.474   7.935   9.585  -6.711  -0.817  -0.410  C4     H84   4  
H84  C5     C3   C   0  1  Y  N  N   8.649   7.929  10.316  -7.180  -1.589   0.667  C5     H84   5  
H84  C6     C4   C   0  1  Y  N  N   9.849   8.241   9.642  -8.302  -2.408   0.456  C6     H84   6  
H84  N6     N3   N   0  1  N  N  N  11.158   8.238  10.355  -8.810  -3.190   1.478  N6     H84   7  
H84  N7     N4   N   0  1  Y  N  N   8.347   7.605  11.610  -6.373  -1.332   1.724  N7     H84   8  
H84  C8     C5   C   0  1  Y  N  N   7.042   7.410  11.675  -5.460  -0.474   1.373  C8     H84   9  
H84  N9     N5   N   0  1  Y  N  N   6.493   7.622  10.458  -5.626  -0.125   0.066  N9     H84  10  
H84  PA     P1   P   0  1  N  N  N   4.832   5.371  14.938   0.676   2.028   1.015  PA     H84  11  
H84  PB     P2   P   0  1  N  N  N   3.792   2.714  14.043   3.374   0.847   0.676  PB     H84  12  
H84  PG     P3   P   0  1  N  N  N   3.716   1.423  16.839   5.773  -0.783   0.004  PG     H84  13  
H84  "C1'"  C6   C   0  1  N  N  R   5.107   7.483  10.088  -4.798   0.816  -0.692  "C1'"  H84  14  
H84  O1A    O1   O   0  1  N  N  N   3.696   5.457  15.961   0.403   1.808   2.586  O1A    H84  15  
H84  O2B    O2   O   0  1  N  N  N   3.737   2.215  12.657   3.713   0.754   2.114  O2B    H84  16  
H84  O1G    O3   O   0  1  N  N  N   3.670   2.901  17.237   6.141  -0.885   1.568  O1G    H84  17  
H84  "C2'"  C7   C   0  1  N  N  N   4.881   6.223   9.775  -5.389   2.241  -0.607  "C2'"  H84  18  
H84  O2A    O4   O   0  1  N  N  N   6.195   5.538  15.574   1.174   3.403   0.788  O2A    H84  19  
H84  O1B    O5   O   0  1  N  N  N   2.381   3.200  14.527   4.080   2.148   0.042  O1B    H84  20  
H84  O2G    O6   O   0  1  N  N  N   4.635   0.644  17.736   6.294  -2.102  -0.757  O2G    H84  21  
H84  "C3'"  C8   C   0  1  N  N  S   4.371   5.606  10.996  -4.148   3.158  -0.529  "C3'"  H84  22  
H84  "O3'"  O7   O   0  1  N  N  N   3.567   4.444  10.781  -4.110   4.047  -1.647  "O3'"  H84  23  
H84  O3A    O8   O   0  1  N  N  N   4.891   3.951  14.067   1.777   0.968   0.508  O3A    H84  24  
H84  C3B    C9   C   0  1  N  N  N   4.540   1.440  15.173   3.965  -0.646  -0.186  C3B    H84  25  
H84  BR1    BR1  BR  0  0  N  N  N   4.660  -0.306  14.438   3.102  -2.234   0.589  BR1    H84  26  
H84  BR2    BR2  BR  0  0  N  N  N   6.414   1.861  15.425   3.514  -0.522  -2.096  BR2    H84  27  
H84  O3G    O9   O   0  1  N  N  N   2.371   0.758  16.672   6.422   0.412  -0.579  O3G    H84  28  
H84  "C4'"  C10  C   0  1  N  N  R   3.540   6.810  11.603  -2.954   2.179  -0.575  "C4'"  H84  29  
H84  "O4'"  O10  O   0  1  N  N  N   4.183   7.818  11.345  -3.486   0.925  -0.097  "O4'"  H84  30  
H84  "C5'"  C11  C   0  1  N  N  N   3.357   6.639  13.212  -1.830   2.665   0.342  "C5'"  H84  31  
H84  "O5'"  O11  O   0  1  N  N  N   4.627   6.561  13.801  -0.693   1.811   0.197  "O5'"  H84  32  
H84  H1     H1   H   0  1  N  N  N   8.651   8.771   6.589  -8.875  -1.706  -2.693  H1     H84  33  
H84  H2     H2   H   0  1  N  N  N  11.889   8.468   9.712  -9.585  -3.752   1.321  H2     H84  34  
H84  H3     H3   H   0  1  N  N  N  11.138   8.914  11.092  -8.391  -3.177   2.353  H3     H84  35  
H84  H4     H4   H   0  1  N  N  N   6.498   7.125  12.563  -4.685  -0.093   2.023  H4     H84  36  
H84  H5     H5   H   0  1  N  N  N   4.852   8.175   9.272  -4.718   0.498  -1.731  H5     H84  37  
H84  H6     H6   H   0  1  N  N  N   4.059   5.602  16.827   0.074   0.926   2.809  H6     H84  38  
H84  H7     H7   H   0  1  N  N  N   2.765   3.179  17.320   5.749  -1.647   2.016  H7     H84  39  
H84  H8     H8   H   0  1  N  N  N   4.136   6.154   8.969  -5.974   2.466  -1.499  H8     H84  40  
H84  H9     H9   H   0  1  N  N  N   5.813   5.733   9.456  -6.000   2.348   0.289  H9     H84  41  
H84  H10    H10  H   0  1  N  N  N   1.748   3.081  13.829   3.901   2.272  -0.900  H10    H84  42  
H84  H11    H11  H   0  1  N  N  N   4.192  -0.140  18.040   7.250  -2.239  -0.697  H11    H84  43  
H84  H12    H12  H   0  1  N  N  N   5.203   5.378  11.679  -4.146   3.719   0.406  H12    H84  44  
H84  H13    H13  H   0  1  N  N  N   3.733   3.812  11.470  -4.869   4.644  -1.701  H13    H84  45  
H84  H14    H14  H   0  1  N  N  N   2.537   6.796  11.151  -2.589   2.073  -1.597  H14    H84  46  
H84  H15    H15  H   0  1  N  N  N   2.813   7.505  13.617  -1.556   3.685   0.072  H15    H84  47  
H84  H16    H16  H   0  1  N  N  N   2.793   5.719  13.425  -2.171   2.643   1.377  H16    H84  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H84  C2     N3     DOUB  Y  N   1  
H84  C2     N1     SING  Y  N   2  
H84  N3     C4     SING  Y  N   3  
H84  N1     C6     DOUB  Y  N   4  
H84  C4     C5     DOUB  Y  N   5  
H84  C4     N9     SING  Y  N   6  
H84  C6     C5     SING  Y  N   7  
H84  C6     N6     SING  N  N   8  
H84  "C2'"  "C1'"  SING  N  N   9  
H84  "C2'"  "C3'"  SING  N  N  10  
H84  "C1'"  N9     SING  N  N  11  
H84  "C1'"  "O4'"  SING  N  N  12  
H84  C5     N7     SING  Y  N  13  
H84  N9     C8     SING  Y  N  14  
H84  "O3'"  "C3'"  SING  N  N  15  
H84  "C3'"  "C4'"  SING  N  N  16  
H84  "O4'"  "C4'"  SING  N  N  17  
H84  "C4'"  "C5'"  SING  N  N  18  
H84  N7     C8     DOUB  Y  N  19  
H84  O2B    PB     DOUB  N  N  20  
H84  "C5'"  "O5'"  SING  N  N  21  
H84  "O5'"  PA     SING  N  N  22  
H84  PB     O3A    SING  N  N  23  
H84  PB     O1B    SING  N  N  24  
H84  PB     C3B    SING  N  N  25  
H84  O3A    PA     SING  N  N  26  
H84  BR1    C3B    SING  N  N  27  
H84  PA     O2A    DOUB  N  N  28  
H84  PA     O1A    SING  N  N  29  
H84  C3B    BR2    SING  N  N  30  
H84  C3B    PG     SING  N  N  31  
H84  O3G    PG     DOUB  N  N  32  
H84  PG     O1G    SING  N  N  33  
H84  PG     O2G    SING  N  N  34  
H84  C2     H1     SING  N  N  35  
H84  N6     H2     SING  N  N  36  
H84  N6     H3     SING  N  N  37  
H84  C8     H4     SING  N  N  38  
H84  "C1'"  H5     SING  N  N  39  
H84  O1A    H6     SING  N  N  40  
H84  O1G    H7     SING  N  N  41  
H84  "C2'"  H8     SING  N  N  42  
H84  "C2'"  H9     SING  N  N  43  
H84  O1B    H10    SING  N  N  44  
H84  O2G    H11    SING  N  N  45  
H84  "C3'"  H12    SING  N  N  46  
H84  "O3'"  H13    SING  N  N  47  
H84  "C4'"  H14    SING  N  N  48  
H84  "C5'"  H15    SING  N  N  49  
H84  "C5'"  H16    SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H84  SMILES            ACDLabs               12.01  "n1c(c2c(nc1)n(cn2)C3OC(C(C3)O)COP(=O)(O)OP(O)(C(P(O)(O)=O)(Br)Br)=O)N"  
H84  InChI             InChI                 1.03   "InChI=1S/C11H16Br2N5O11P3/c12-11(13,30(20,21)22)31(23,24)29-32(25,26)27-2-6-5(19)1-7(28-6)18-4-17-8-9(14)15-3-16-10(8)18/h3-7,19H,1-2H2,(H,23,24)(H,25,26)(H2,14,15,16)(H2,20,21,22)/t5-,6+,7+/m0/s1"  
H84  InChIKey          InChI                 1.03   QNLUNEAMUQCVKG-RRKCRQDMSA-N  
H84  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)O3"  
H84  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)C(Br)(Br)[P](O)(O)=O)O3"  
H84  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Br)Br)O)O)N"  
H84  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)(Br)Br)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H84  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-deoxy-5'-O-[(R)-{[(R)-[dibromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine"  
H84  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[[[[(2~{R},3~{S},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]-bis(bromanyl)methyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H84  "Create component"  2018-06-14  RCSB  
H84  "Initial release"   2018-06-27  RCSB  
H84  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     H84
_pdbx_chem_comp_synonyms.name        "beta, gamma dATP analogue"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
