data_Y44
#

_chem_comp.id                                   Y44
_chem_comp.name                                 "N-[(pyridin-3-yl)methyl]-4-(thiophene-2-carbonyl)piperazine-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H18 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       330.405
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y44
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S9D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y44  N1   N1   N  0  1  N  N  N  -15.872  17.250  25.657  -2.442  -0.899   0.094  N1   Y44   1  
Y44  N3   N2   N  0  1  N  N  N  -17.285  15.571  26.367  -0.259  -1.691   0.332  N3   Y44   2  
Y44  C4   C1   C  0  1  Y  N  N  -13.854  20.066  26.911  -4.792   0.948  -1.201  C4   Y44   3  
Y44  C5   C2   C  0  1  Y  N  N  -14.012  21.412  27.146  -5.504   2.130  -1.065  C5   Y44   4  
Y44  C6   C3   C  0  1  Y  N  N  -15.040  22.070  26.521  -6.016   2.469   0.173  C6   Y44   5  
Y44  C7   C4   C  0  1  Y  N  N  -15.727  20.153  25.479  -5.170   0.548   1.122  C7   Y44   6  
Y44  C8   C5   C  0  1  N  N  N  -17.422  14.356  27.170   0.715  -2.792   0.296  C8   Y44   7  
Y44  C10  C6   C  0  1  N  N  N  -20.165  12.658  25.265   3.618  -0.835  -0.065  C10  Y44   8  
Y44  C13  C7   C  0  1  Y  N  N  -23.087  12.956  27.518   5.428   2.275   0.773  C13  Y44   9  
Y44  C15  C8   C  0  1  N  N  N  -18.361  14.169  24.705   1.343   0.038  -0.298  C15  Y44  10  
Y44  C1   C9   C  0  1  N  N  N  -16.432  16.570  26.677  -1.561  -1.919   0.069  C1   Y44  11  
Y44  C11  C10  C  0  1  Y  N  N  -21.341  12.528  26.066   4.108   0.539   0.075  C11  Y44  12  
Y44  C12  C11  C  0  1  Y  N  N  -21.709  13.142  27.250   5.190   0.922   0.818  C12  Y44  13  
Y44  C14  C12  C  0  1  Y  N  N  -23.667  12.067  26.693   4.573   2.977   0.021  C14  Y44  14  
Y44  C16  C13  C  0  1  N  N  N  -18.155  15.581  25.198   0.212  -0.340   0.667  C16  Y44  15  
Y44  C2   C14  C  0  1  N  N  N  -14.590  17.928  25.773  -3.859  -1.149  -0.180  C2   Y44  16  
Y44  C3   C15  C  0  1  Y  N  N  -14.725  19.403  26.063  -4.625   0.146  -0.083  C3   Y44  17  
Y44  C9   C16  C  0  1  N  N  N  -18.822  13.781  27.077   1.846  -2.414  -0.668  C9   Y44  18  
Y44  N2   N3   N  0  1  Y  N  N  -15.903  21.468  25.690  -5.832   1.684   1.217  N2   Y44  19  
Y44  N4   N4   N  0  1  N  N  N  -19.165  13.453  25.690   2.316  -1.062  -0.334  N4   Y44  20  
Y44  O1   O1   O  0  1  N  N  N  -16.123  16.792  27.847  -1.941  -3.044  -0.192  O1   Y44  21  
Y44  O2   O2   O  0  1  N  N  N  -20.142  12.128  24.157   4.385  -1.772   0.060  O2   Y44  22  
Y44  S1   S1   S  0  1  Y  N  N  -22.599  11.498  25.503   3.405   1.957  -0.690  S1   Y44  23  
Y44  H1   H1   H  0  1  N  N  N  -16.358  17.290  24.784  -2.138  -0.001   0.298  H1   Y44  24  
Y44  H4   H2   H  0  1  N  N  N  -13.050  19.526  27.388  -4.381   0.657  -2.157  H4   Y44  25  
Y44  H5   H3   H  0  1  N  N  N  -13.341  21.939  27.808  -5.657   2.777  -1.916  H5   Y44  26  
Y44  H6   H4   H  0  1  N  N  N  -15.161  23.127  26.708  -6.571   3.388   0.287  H6   Y44  27  
Y44  H7   H5   H  0  1  N  N  N  -16.412  19.651  24.811  -5.044  -0.071   1.998  H7   Y44  28  
Y44  H9   H6   H  0  1  N  N  N  -16.703  13.606  26.808   1.123  -2.951   1.294  H9   Y44  29  
Y44  H8   H7   H  0  1  N  N  N  -17.204  14.596  28.221   0.226  -3.701  -0.052  H8   Y44  30  
Y44  H13  H8   H  0  1  N  N  N  -23.617  13.474  28.303   6.243   2.738   1.309  H13  Y44  31  
Y44  H16  H9   H  0  1  N  N  N  -17.388  13.671  24.586   0.934   0.198  -1.296  H16  Y44  32  
Y44  H15  H10  H  0  1  N  N  N  -18.885  14.185  23.738   1.829   0.950   0.049  H15  Y44  33  
Y44  H12  H11  H  0  1  N  N  N  -21.033  13.692  27.887   5.797   0.231   1.383  H12  Y44  34  
Y44  H14  H12  H  0  1  N  N  N  -24.696  11.751  26.778   4.616   4.048  -0.118  H14  Y44  35  
Y44  H18  H13  H  0  1  N  N  N  -17.691  16.182  24.402  -0.610   0.369   0.563  H18  Y44  36  
Y44  H17  H14  H  0  1  N  N  N  -19.127  16.019  25.469   0.584  -0.325   1.691  H17  Y44  37  
Y44  H2   H15  H  0  1  N  N  N  -14.020  17.461  26.590  -3.968  -1.561  -1.183  H2   Y44  38  
Y44  H3   H16  H  0  1  N  N  N  -14.042  17.806  24.827  -4.251  -1.858   0.549  H3   Y44  39  
Y44  H11  H17  H  0  1  N  N  N  -18.877  12.867  27.687   2.667  -3.123  -0.565  H11  Y44  40  
Y44  H10  H18  H  0  1  N  N  N  -19.541  14.521  27.460   1.474  -2.428  -1.693  H10  Y44  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y44  O1   C1   DOUB  N  N   1  
Y44  C1   N1   SING  N  N   2  
Y44  N1   C2   SING  N  N   3  
Y44  C2   C3   SING  N  N   4  
Y44  C3   C4   DOUB  Y  N   5  
Y44  C4   C5   SING  Y  N   6  
Y44  C5   C6   DOUB  Y  N   7  
Y44  C6   N2   SING  Y  N   8  
Y44  N2   C7   DOUB  Y  N   9  
Y44  C1   N3   SING  N  N  10  
Y44  N3   C8   SING  N  N  11  
Y44  C8   C9   SING  N  N  12  
Y44  C9   N4   SING  N  N  13  
Y44  N4   C10  SING  N  N  14  
Y44  C10  O2   DOUB  N  N  15  
Y44  C10  C11  SING  N  N  16  
Y44  C11  C12  DOUB  Y  N  17  
Y44  C12  C13  SING  Y  N  18  
Y44  C13  C14  DOUB  Y  N  19  
Y44  C14  S1   SING  Y  N  20  
Y44  N4   C15  SING  N  N  21  
Y44  C15  C16  SING  N  N  22  
Y44  C3   C7   SING  Y  N  23  
Y44  N3   C16  SING  N  N  24  
Y44  C11  S1   SING  Y  N  25  
Y44  N1   H1   SING  N  N  26  
Y44  C4   H4   SING  N  N  27  
Y44  C5   H5   SING  N  N  28  
Y44  C6   H6   SING  N  N  29  
Y44  C7   H7   SING  N  N  30  
Y44  C8   H9   SING  N  N  31  
Y44  C8   H8   SING  N  N  32  
Y44  C13  H13  SING  N  N  33  
Y44  C15  H16  SING  N  N  34  
Y44  C15  H15  SING  N  N  35  
Y44  C12  H12  SING  N  N  36  
Y44  C14  H14  SING  N  N  37  
Y44  C16  H18  SING  N  N  38  
Y44  C16  H17  SING  N  N  39  
Y44  C2   H2   SING  N  N  40  
Y44  C2   H3   SING  N  N  41  
Y44  C9   H11  SING  N  N  42  
Y44  C9   H10  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y44  SMILES            ACDLabs               12.01  "N(Cc1cccnc1)C(N3CCN(C(=O)c2cccs2)CC3)=O"  
Y44  InChI             InChI                 1.03   "InChI=1S/C16H18N4O2S/c21-15(14-4-2-10-23-14)19-6-8-20(9-7-19)16(22)18-12-13-3-1-5-17-11-13/h1-5,10-11H,6-9,12H2,(H,18,22)"  
Y44  InChIKey          InChI                 1.03   QWTHOPVYVVYMKH-UHFFFAOYSA-N  
Y44  SMILES_CANONICAL  CACTVS                3.385  "O=C(NCc1cccnc1)N2CCN(CC2)C(=O)c3sccc3"  
Y44  SMILES            CACTVS                3.385  "O=C(NCc1cccnc1)N2CCN(CC2)C(=O)c3sccc3"  
Y44  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cnc1)CNC(=O)N2CCN(CC2)C(=O)c3cccs3"  
Y44  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cnc1)CNC(=O)N2CCN(CC2)C(=O)c3cccs3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y44  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(pyridin-3-yl)methyl]-4-(thiophene-2-carbonyl)piperazine-1-carboxamide"  
Y44  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-(pyridin-3-ylmethyl)-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y44  "Create component"  2021-02-03  RCSB  
Y44  "Initial release"   2021-02-17  RCSB  
##
