data_Y64
# 
_chem_comp.id                                    Y64 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-(((((1R,3R,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H39 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.647 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y64 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y64 C12 C1  C 0 1 N N N N N N 10.628 21.587 27.970 -1.293 -0.177 0.921  C12 Y64 1  
Y64 C14 C2  C 0 1 N N N N N N 13.068 21.963 28.397 -0.378 -1.311 -1.086 C14 Y64 2  
Y64 C15 C3  C 0 1 N N N N N N 14.419 22.489 27.969 0.770  -1.308 -2.098 C15 Y64 3  
Y64 C16 C4  C 0 1 N N N N N N 15.473 22.176 29.030 0.563  -2.440 -3.106 C16 Y64 4  
Y64 C17 C5  C 0 1 N N N N N N 14.887 21.911 26.659 0.796  0.033  -2.835 C17 Y64 5  
Y64 C19 C6  C 0 1 N N N N N N 10.830 24.021 26.153 2.308  -0.302 0.306  C19 Y64 6  
Y64 C21 C7  C 0 1 N N N N N N 9.339  25.767 25.420 4.689  -0.255 0.463  C21 Y64 7  
Y64 C24 C8  C 0 1 N N R N N N 6.730  27.908 24.863 7.180  1.322  0.944  C24 Y64 8  
Y64 C25 C9  C 0 1 N N N N N N 6.871  29.008 25.903 8.151  0.486  0.109  C25 Y64 9  
Y64 C26 C10 C 0 1 N N S N N N 8.248  28.868 26.539 7.368  -0.663 -0.538 C26 Y64 10 
Y64 C02 C11 C 0 1 N N N N N N 6.567  20.958 24.892 -2.995 2.670  -0.291 C02 Y64 11 
Y64 C04 C12 C 0 1 N N N N N N 5.650  22.702 26.263 -4.829 3.596  -1.375 C04 Y64 12 
Y64 C05 C13 C 0 1 N N N N N N 6.672  21.919 27.108 -5.194 3.574  0.126  C05 Y64 13 
Y64 C06 C14 C 0 1 N N S N N N 7.474  21.045 26.127 -4.142 2.593  0.692  C06 Y64 14 
Y64 C07 C15 C 0 1 N N N N N N 7.851  19.690 26.735 -4.708 1.172  0.744  C07 Y64 15 
Y64 C08 C16 C 0 1 N N S N N N 8.890  19.806 27.914 -3.660 0.227  1.335  C08 Y64 16 
Y64 C09 C17 C 0 1 N N S N N N 9.217  18.425 28.483 -4.268 -1.167 1.503  C09 Y64 17 
Y64 C13 C18 C 0 1 N N S N N N 11.949 22.181 27.391 -0.108 -0.260 -0.006 C13 Y64 18 
Y64 C22 C19 C 0 1 N N R N N N 8.151  26.234 26.326 5.806  -0.735 1.391  C22 Y64 19 
Y64 C23 C20 C 0 1 N N N N N N 6.847  26.529 25.514 6.507  0.473  2.011  C23 Y64 20 
Y64 C27 C21 C 0 1 N N N N N N 8.465  27.483 27.181 6.820  -1.557 0.588  C27 Y64 21 
Y64 C28 C22 C 0 1 N N N N N N 9.238  29.134 25.446 6.190  -0.098 -1.288 C28 Y64 22 
Y64 C29 C23 C 0 1 N N N N N N 8.941  28.902 24.176 5.667  1.055  -1.023 C29 Y64 23 
Y64 C30 C24 C 0 1 N N N N N N 7.765  28.095 23.737 6.164  1.996  0.032  C30 Y64 24 
Y64 N03 N1  N 0 1 N N N N N N 5.558  21.918 25.045 -3.407 3.241  -1.437 N03 Y64 25 
Y64 N11 N2  N 0 1 N N N N N N 10.142 20.399 27.422 -2.507 0.152  0.435  N11 Y64 26 
Y64 N18 N3  N 0 1 N N N N N N 11.787 23.605 27.061 1.083  -0.639 0.757  N18 Y64 27 
Y64 O01 O1  O 0 1 N N N N N N 6.660  20.223 23.950 -1.868 2.280  -0.076 O01 Y64 28 
Y64 O10 O2  O 0 1 N N N N N N 8.000  17.881 28.953 -5.460 -1.076 2.286  O10 Y64 29 
Y64 O20 O3  O 0 1 N N N N N N 10.565 25.395 26.053 3.403  -0.651 1.008  O20 Y64 30 
Y64 O31 O4  O 0 1 N N N N N N 10.201 23.242 25.459 2.424  0.315  -0.733 O31 Y64 31 
Y64 O32 O5  O 0 1 N N N N N N 10.019 22.146 28.845 -1.156 -0.411 2.103  O32 Y64 32 
Y64 H1  H1  H 0 1 N N N N N N 12.787 22.465 29.335 -1.312 -1.076 -1.595 H1  Y64 33 
Y64 H2  H2  H 0 1 N N N N N N 13.163 20.881 28.574 -0.452 -2.295 -0.624 H2  Y64 34 
Y64 H3  H3  H 0 1 N N N N N N 14.350 23.582 27.864 1.715  -1.454 -1.576 H3  Y64 35 
Y64 H4  H4  H 0 1 N N N N N N 15.153 22.589 29.998 -0.382 -2.294 -3.628 H4  Y64 36 
Y64 H5  H5  H 0 1 N N N N N N 15.592 21.086 29.118 1.381  -2.438 -3.827 H5  Y64 37 
Y64 H6  H6  H 0 1 N N N N N N 16.433 22.628 28.738 0.545  -3.395 -2.581 H6  Y64 38 
Y64 H7  H7  H 0 1 N N N N N N 15.871 22.331 26.403 -0.150 0.179  -3.357 H7  Y64 39 
Y64 H8  H8  H 0 1 N N N N N N 14.967 20.818 26.749 0.943  0.840  -2.117 H8  Y64 40 
Y64 H9  H9  H 0 1 N N N N N N 14.165 22.162 25.869 1.613  0.035  -3.556 H9  Y64 41 
Y64 H10 H10 H 0 1 N N N N N N 9.566  26.592 24.729 4.729  0.831  0.377  H10 Y64 42 
Y64 H11 H11 H 0 1 N N N N N N 8.990  24.895 24.848 4.819  -0.701 -0.523 H11 Y64 43 
Y64 H12 H12 H 0 1 N N N N N N 5.728  27.988 24.416 7.749  2.107  1.442  H12 Y64 44 
Y64 H13 H13 H 0 1 N N N N N N 6.779  29.993 25.422 8.598  1.108  -0.667 H13 Y64 45 
Y64 H14 H14 H 0 1 N N N N N N 6.091  28.900 26.671 8.933  0.081  0.751  H14 Y64 46 
Y64 H15 H15 H 0 1 N N N N N N 8.358  29.636 27.319 8.013  -1.238 -1.202 H15 Y64 47 
Y64 H16 H16 H 0 1 N N N N N N 6.010  23.720 26.051 -5.425 2.864  -1.918 H16 Y64 48 
Y64 H17 H17 H 0 1 N N N N N N 4.676  22.756 26.772 -4.989 4.593  -1.787 H17 Y64 49 
Y64 H18 H18 H 0 1 N N N N N N 6.152  21.286 27.843 -5.083 4.564  0.569  H18 Y64 50 
Y64 H19 H19 H 0 1 N N N N N N 7.343  22.615 27.633 -6.205 3.194  0.276  H19 Y64 51 
Y64 H20 H20 H 0 1 N N N N N N 8.396  21.579 25.852 -3.817 2.909  1.683  H20 Y64 52 
Y64 H21 H21 H 0 1 N N N N N N 6.937  19.213 27.120 -5.602 1.160  1.368  H21 Y64 53 
Y64 H22 H22 H 0 1 N N N N N N 8.288  19.062 25.945 -4.964 0.846  -0.264 H22 Y64 54 
Y64 H23 H23 H 0 1 N N N N N N 8.458  20.435 28.707 -3.339 0.603  2.307  H23 Y64 55 
Y64 H24 H24 H 0 1 N N N N N N 9.868  18.594 29.354 -3.552 -1.817 2.005  H24 Y64 56 
Y64 S1  S1  S 0 1 N Y N N N N 9.652  17.797 27.734 -4.667 -1.853 -0.128 S1  Y64 57 
Y64 H26 H26 H 0 1 N N N N N N 12.195 21.626 26.473 0.054  0.710  -0.476 H26 Y64 58 
Y64 H27 H27 H 0 1 N N N N N N 7.925  25.409 27.018 5.381  -1.354 2.181  H27 Y64 59 
Y64 H28 H28 H 0 1 N N N N N N 5.995  26.413 26.201 7.260  0.125  2.719  H28 Y64 60 
Y64 H29 H29 H 0 1 N N N N N N 6.778  25.778 24.714 5.773  1.080  2.541  H29 Y64 61 
Y64 H30 H30 H 0 1 N N N N N N 7.830  27.434 28.078 6.329  -2.431 0.159  H30 Y64 62 
Y64 H31 H31 H 0 1 N N N N N N 9.523  27.421 27.476 7.636  -1.873 1.237  H31 Y64 63 
Y64 H32 H32 H 0 1 N N N N N N 10.213 29.523 25.699 5.761  -0.685 -2.086 H32 Y64 64 
Y64 H33 H33 H 0 1 N N N N N N 9.585  29.320 23.417 4.811  1.363  -1.606 H33 Y64 65 
Y64 H34 H34 H 0 1 N N N N N N 7.280  28.607 22.893 5.319  2.338  0.631  H34 Y64 66 
Y64 H35 H35 H 0 1 N N N N N N 8.117  27.105 23.412 6.630  2.856  -0.448 H35 Y64 67 
Y64 H36 H36 H 0 1 N N N N N N 4.833  22.052 24.370 -2.836 3.398  -2.206 H36 Y64 68 
Y64 H37 H37 H 0 1 N N N N N N 10.650 19.947 26.688 -2.616 0.340  -0.510 H37 Y64 69 
Y64 H38 H38 H 0 1 N N N N N N 12.377 24.283 27.500 0.991  -1.132 1.587  H38 Y64 70 
Y64 H39 H39 H 0 1 N N N N N N 8.158  17.018 29.317 -6.143 -0.512 1.898  H39 Y64 71 
Y64 O2  O6  O 0 1 N Y N N N N ?      ?      ?      -5.658 -1.064 -0.772 O2  Y64 72 
Y64 O1  O7  O 0 1 N Y N N N N ?      ?      ?      -3.482 -2.240 -0.810 O1  Y64 73 
Y64 O3  O8  O 0 1 N Y N N N N ?      ?      ?      -5.372 -3.167 0.174  O3  Y64 74 
Y64 H25 H25 H 0 1 N Y N N N N ?      ?      ?      -5.649 -3.655 -0.613 H25 Y64 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y64 C30 C29 SING N N 1  
Y64 C30 C24 SING N N 2  
Y64 O01 C02 DOUB N N 3  
Y64 C29 C28 DOUB N N 4  
Y64 C24 C23 SING N N 5  
Y64 C24 C25 SING N N 6  
Y64 C02 N03 SING N N 7  
Y64 C02 C06 SING N N 8  
Y64 N03 C04 SING N N 9  
Y64 C21 O20 SING N N 10 
Y64 C21 C22 SING N N 11 
Y64 C28 C26 SING N N 12 
Y64 O31 C19 DOUB N N 13 
Y64 C23 C22 SING N N 14 
Y64 C25 C26 SING N N 15 
Y64 O20 C19 SING N N 16 
Y64 C06 C07 SING N N 17 
Y64 C06 C05 SING N N 18 
Y64 C19 N18 SING N N 19 
Y64 C04 C05 SING N N 20 
Y64 C22 C27 SING N N 21 
Y64 C26 C27 SING N N 22 
Y64 C17 C15 SING N N 23 
Y64 C07 C08 SING N N 24 
Y64 N18 C13 SING N N 25 
Y64 C13 C12 SING N N 26 
Y64 C13 C14 SING N N 27 
Y64 N11 C08 SING N N 28 
Y64 N11 C12 SING N N 29 
Y64 C08 C09 SING N N 30 
Y64 C15 C14 SING N N 31 
Y64 C15 C16 SING N N 32 
Y64 C12 O32 DOUB N N 33 
Y64 C09 O10 SING N N 34 
Y64 C14 H1  SING N N 35 
Y64 C14 H2  SING N N 36 
Y64 C15 H3  SING N N 37 
Y64 C16 H4  SING N N 38 
Y64 C16 H5  SING N N 39 
Y64 C16 H6  SING N N 40 
Y64 C17 H7  SING N N 41 
Y64 C17 H8  SING N N 42 
Y64 C17 H9  SING N N 43 
Y64 C21 H10 SING N N 44 
Y64 C21 H11 SING N N 45 
Y64 C24 H12 SING N N 46 
Y64 C25 H13 SING N N 47 
Y64 C25 H14 SING N N 48 
Y64 C26 H15 SING N N 49 
Y64 C04 H16 SING N N 50 
Y64 C04 H17 SING N N 51 
Y64 C05 H18 SING N N 52 
Y64 C05 H19 SING N N 53 
Y64 C06 H20 SING N N 54 
Y64 C07 H21 SING N N 55 
Y64 C07 H22 SING N N 56 
Y64 C08 H23 SING N N 57 
Y64 C09 H24 SING N N 58 
Y64 C09 S1  SING N N 59 
Y64 C13 H26 SING N N 60 
Y64 C22 H27 SING N N 61 
Y64 C23 H28 SING N N 62 
Y64 C23 H29 SING N N 63 
Y64 C27 H30 SING N N 64 
Y64 C27 H31 SING N N 65 
Y64 C28 H32 SING N N 66 
Y64 C29 H33 SING N N 67 
Y64 C30 H34 SING N N 68 
Y64 C30 H35 SING N N 69 
Y64 N03 H36 SING N N 70 
Y64 N11 H37 SING N N 71 
Y64 N18 H38 SING N N 72 
Y64 O10 H39 SING N N 73 
Y64 S1  O2  DOUB N N 74 
Y64 S1  O1  DOUB N N 75 
Y64 S1  O3  SING N N 76 
Y64 O3  H25 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y64 InChI            InChI                1.03  "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17-,18-,19-,20-,23-/m0/s1" 
Y64 InChIKey         InChI                1.03  ZIWRGXZFSGDQST-LZHMTVEHSA-N                                                                                                                                                                                                                   
Y64 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                       
Y64 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                   
Y64 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2C[C@@H]3CC=C[C@@H](C3)C2"                                                                                                                                            
Y64 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2"                                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           Y64 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{R},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y64 "Create component" 2021-02-08 RCSB 
Y64 "Modify name"      2021-02-09 RCSB 
Y64 "Initial release"  2021-02-17 RCSB 
Y64 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y64 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C09 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
