data_3M5
#

_chem_comp.id                                   3M5
_chem_comp.name                                 "3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H23 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(3-Oxodecanoyl)-L-homoserine lactone"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-09-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       269.337
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3M5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4RDY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3M5  CA   CA   C  0  1  N  N  S  -78.781  84.054   7.469  -4.351   0.223   0.530  CA   3M5   1  
3M5  CB   CB   C  0  1  N  N  N  -78.919  85.535   7.558  -5.543   1.205   0.552  CB   3M5   2  
3M5  C    C    C  0  1  N  N  N  -77.521  84.157   6.888  -4.848  -0.965  -0.267  C    3M5   3  
3M5  O    O    O  0  1  N  N  N  -77.101  83.294   6.197  -4.157  -1.792  -0.814  O    3M5   4  
3M5  OAC  OAC  O  0  1  N  N  N  -76.861  85.339   7.063  -6.194  -0.940  -0.260  OAC  3M5   5  
3M5  CAB  CAB  C  0  1  N  N  N  -77.539  86.047   8.061  -6.628   0.453  -0.248  CAB  3M5   6  
3M5  N    N    N  0  1  N  N  N  -78.977  83.393   8.819  -3.196   0.835  -0.132  N    3M5   7  
3M5  CAG  CAG  C  0  1  N  N  N  -79.132  84.084   9.906  -1.950   0.413   0.159  CAG  3M5   8  
3M5  OAL  OAL  O  0  1  N  N  N  -79.104  85.263   9.889  -1.784  -0.474   0.970  OAL  3M5   9  
3M5  CAH  CAH  C  0  1  N  N  N  -79.445  83.448  11.211  -0.762   1.043  -0.522  CAH  3M5  10  
3M5  CAI  CAI  C  0  1  N  N  N  -80.973  83.592  11.349   0.504   0.395  -0.024  CAI  3M5  11  
3M5  OAM  OAM  O  0  1  N  N  N  -81.659  83.606  10.327   0.448  -0.487   0.799  OAM  3M5  12  
3M5  CAJ  CAJ  C  0  1  N  N  N  -81.552  83.823  12.734   1.840   0.848  -0.553  CAJ  3M5  13  
3M5  CAN  CAN  C  0  1  N  N  N  -82.982  83.394  12.835   2.954   0.036   0.111  CAN  3M5  14  
3M5  CAO  CAO  C  0  1  N  N  N  -83.207  83.497  14.311   4.311   0.495  -0.426  CAO  3M5  15  
3M5  CAP  CAP  C  0  1  N  N  N  -84.616  83.122  14.763   5.424  -0.317   0.238  CAP  3M5  16  
3M5  CAQ  CAQ  C  0  1  N  N  N  -85.064  81.847  14.165   6.781   0.143  -0.300  CAQ  3M5  17  
3M5  CAR  CAR  C  0  1  N  N  N  -86.423  81.798  14.664   7.894  -0.670   0.364  CAR  3M5  18  
3M5  CAS  CAS  C  0  1  N  N  N  -86.954  80.421  14.415   9.251  -0.210  -0.173  CAS  3M5  19  
3M5  H1   H1   H  0  1  N  N  N  -79.517  83.654   6.756  -4.090  -0.080   1.544  H1   3M5  20  
3M5  H2   H2   H  0  1  N  N  N  -79.151  85.960   6.570  -5.874   1.387   1.574  H2   3M5  21  
3M5  H3   H3   H  0  1  N  N  N  -79.713  85.806   8.270  -5.280   2.141   0.058  H3   3M5  22  
3M5  H4   H4   H  0  1  N  N  N  -77.291  85.719   9.081  -7.595   0.544   0.248  H4   3M5  23  
3M5  H5   H5   H  0  1  N  N  N  -77.419  87.138   7.988  -6.686   0.841  -1.265  H5   3M5  24  
3M5  H6   H6   H  0  1  N  N  N  -78.987  82.395   8.873  -3.329   1.545  -0.780  H6   3M5  25  
3M5  H7   H7   H  0  1  N  N  N  -79.152  82.388  11.208  -0.844   0.900  -1.599  H7   3M5  26  
3M5  H8   H8   H  0  1  N  N  N  -78.929  83.968  12.032  -0.738   2.109  -0.298  H8   3M5  27  
3M5  H9   H9   H  0  1  N  N  N  -80.960  83.252  13.464   1.874   0.697  -1.632  H9   3M5  28  
3M5  H10  H10  H  0  1  N  N  N  -81.488  84.896  12.969   1.980   1.906  -0.330  H10  3M5  29  
3M5  H11  H11  H  0  1  N  N  N  -83.647  84.070  12.277   2.920   0.187   1.190  H11  3M5  30  
3M5  H12  H12  H  0  1  N  N  N  -83.121  82.364  12.476   2.814  -1.022  -0.112  H12  3M5  31  
3M5  H13  H13  H  0  1  N  N  N  -82.495  82.827  14.815   4.344   0.344  -1.505  H13  3M5  32  
3M5  H14  H14  H  0  1  N  N  N  -83.013  84.536  14.617   4.450   1.553  -0.203  H14  3M5  33  
3M5  H15  H15  H  0  1  N  N  N  -85.311  83.920  14.462   5.390  -0.166   1.317  H15  3M5  34  
3M5  H16  H16  H  0  1  N  N  N  -84.624  83.023  15.859   5.285  -1.375   0.014  H16  3M5  35  
3M5  H17  H17  H  0  1  N  N  N  -84.467  80.996  14.524   6.814  -0.008  -1.378  H17  3M5  36  
3M5  H18  H18  H  0  1  N  N  N  -85.034  81.879  13.066   6.920   1.201  -0.076  H18  3M5  37  
3M5  H19  H19  H  0  1  N  N  N  -86.433  82.013  15.743   7.860  -0.518   1.443  H19  3M5  38  
3M5  H20  H20  H  0  1  N  N  N  -87.042  82.539  14.136   7.755  -1.727   0.141  H20  3M5  39  
3M5  H21  H21  H  0  1  N  N  N  -87.988  80.354  14.785   9.391   0.848   0.050  H21  3M5  40  
3M5  H22  H22  H  0  1  N  N  N  -86.936  80.211  13.335  10.044  -0.789   0.300  H22  3M5  41  
3M5  H23  H23  H  0  1  N  N  N  -86.328  79.686  14.942   9.285  -0.361  -1.252  H23  3M5  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3M5  O    C    DOUB  N  N   1  
3M5  C    OAC  SING  N  N   2  
3M5  C    CA   SING  N  N   3  
3M5  OAC  CAB  SING  N  N   4  
3M5  CA   CB   SING  N  N   5  
3M5  CA   N    SING  N  N   6  
3M5  CB   CAB  SING  N  N   7  
3M5  N    CAG  SING  N  N   8  
3M5  OAL  CAG  DOUB  N  N   9  
3M5  CAG  CAH  SING  N  N  10  
3M5  OAM  CAI  DOUB  N  N  11  
3M5  CAH  CAI  SING  N  N  12  
3M5  CAI  CAJ  SING  N  N  13  
3M5  CAJ  CAN  SING  N  N  14  
3M5  CAN  CAO  SING  N  N  15  
3M5  CAQ  CAR  SING  N  N  16  
3M5  CAQ  CAP  SING  N  N  17  
3M5  CAO  CAP  SING  N  N  18  
3M5  CAS  CAR  SING  N  N  19  
3M5  CA   H1   SING  N  N  20  
3M5  CB   H2   SING  N  N  21  
3M5  CB   H3   SING  N  N  22  
3M5  CAB  H4   SING  N  N  23  
3M5  CAB  H5   SING  N  N  24  
3M5  N    H6   SING  N  N  25  
3M5  CAH  H7   SING  N  N  26  
3M5  CAH  H8   SING  N  N  27  
3M5  CAJ  H9   SING  N  N  28  
3M5  CAJ  H10  SING  N  N  29  
3M5  CAN  H11  SING  N  N  30  
3M5  CAN  H12  SING  N  N  31  
3M5  CAO  H13  SING  N  N  32  
3M5  CAO  H14  SING  N  N  33  
3M5  CAP  H15  SING  N  N  34  
3M5  CAP  H16  SING  N  N  35  
3M5  CAQ  H17  SING  N  N  36  
3M5  CAQ  H18  SING  N  N  37  
3M5  CAR  H19  SING  N  N  38  
3M5  CAR  H20  SING  N  N  39  
3M5  CAS  H21  SING  N  N  40  
3M5  CAS  H22  SING  N  N  41  
3M5  CAS  H23  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3M5  SMILES            ACDLabs               12.01  "O=C1OCCC1NC(=O)CC(=O)CCCCCCC"  
3M5  InChI             InChI                 1.03   "InChI=1S/C14H23NO4/c1-2-3-4-5-6-7-11(16)10-13(17)15-12-8-9-19-14(12)18/h12H,2-10H2,1H3,(H,15,17)/t12-/m0/s1"  
3M5  InChIKey          InChI                 1.03   KYGIKEQVUKTKRR-LBPRGKRZSA-N  
3M5  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O"  
3M5  SMILES            CACTVS                3.385  "CCCCCCCC(=O)CC(=O)N[CH]1CCOC1=O"  
3M5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O"  
3M5  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCCCC(=O)CC(=O)NC1CCOC1=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3M5  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]decanamide"  
3M5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "3-oxidanylidene-N-[(3S)-2-oxidanylideneoxolan-3-yl]decanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3M5  "Create component"  2014-09-22  RCSB  
3M5  "Initial release"   2015-02-25  RCSB  
3M5  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3M5
_pdbx_chem_comp_synonyms.name        "N-(3-Oxodecanoyl)-L-homoserine lactone"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
