data_4M5
# 
_chem_comp.id                                    4M5 
_chem_comp.name                                  "(4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H32 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        344.488 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4M5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5AZT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4M5 O23 O1  O 0 1 N N N N N N -4.231  -20.510 -15.792 5.593  -0.850 -1.033 O23 4M5 1  
4M5 C17 C1  C 0 1 N N N N N N -4.657  -21.641 -15.779 5.735  -0.672 0.152  C17 4M5 2  
4M5 C18 C2  C 0 1 N N N N N N -4.262  -22.547 -14.668 6.855  0.202  0.655  C18 4M5 3  
4M5 C19 C3  C 0 1 N N N N N N -2.926  -23.136 -15.065 7.646  0.727  -0.516 C19 4M5 4  
4M5 C20 C4  C 0 1 N N N N N N -1.888  -23.188 -14.226 7.870  2.013  -0.631 C20 4M5 5  
4M5 C21 C5  C 0 1 N N N N N N -1.965  -22.662 -12.813 7.479  2.949  0.483  C21 4M5 6  
4M5 C22 C6  C 0 1 N N N N N N -0.587  -22.251 -12.365 8.689  3.792  0.890  C22 4M5 7  
4M5 C16 C7  C 0 1 N N N N N N -5.541  -22.159 -16.878 4.787  -1.318 1.130  C16 4M5 8  
4M5 C15 C8  C 0 1 N N N N N N -7.068  -22.011 -16.705 3.748  -2.140 0.365  C15 4M5 9  
4M5 C14 C9  C 0 1 N N N N N N -7.459  -21.562 -15.275 2.800  -2.786 1.342  C14 4M5 10 
4M5 C13 C10 C 0 1 N N N N N N -7.927  -22.303 -14.249 1.507  -2.641 1.195  C13 4M5 11 
4M5 C12 C11 C 0 1 N N N N N N -8.189  -23.806 -14.203 0.961  -1.965 -0.036 C12 4M5 12 
4M5 C11 C12 C 0 1 N N N N N N -8.753  -24.121 -12.834 -0.062 -2.859 -0.688 C11 4M5 13 
4M5 C10 C13 C 0 1 N N N N N N -9.365  -25.254 -12.457 -1.258 -2.398 -0.959 C10 4M5 14 
4M5 C9  C14 C 0 1 N N N N N N -9.619  -26.473 -13.309 -1.559 -0.933 -0.779 C9  4M5 15 
4M5 C8  C15 C 0 1 N N N N N N -9.264  -27.719 -12.511 -2.143 -0.380 -2.053 C8  4M5 16 
4M5 C7  C16 C 0 1 N N N N N N -10.099 -28.750 -12.279 -3.285 0.262  -2.026 C7  4M5 17 
4M5 C6  C17 C 0 1 N N N N N N -11.520 -28.817 -12.801 -3.936 0.587  -0.706 C6  4M5 18 
4M5 C5  C18 C 0 1 N N N N N N -12.113 -30.201 -12.635 -4.262 2.057  -0.656 C5  4M5 19 
4M5 C4  C19 C 0 1 N N N N N N -13.363 -30.514 -13.023 -5.493 2.447  -0.436 C4  4M5 20 
4M5 C3  C20 C 0 1 N N N N N N -14.324 -29.524 -13.673 -6.611 1.437  -0.411 C3  4M5 21 
4M5 C2  C21 C 0 1 N N N N N N -15.805 -29.872 -13.450 -7.288 1.459  0.961  C2  4M5 22 
4M5 C1  C22 C 0 1 N N N N N N -16.734 -29.352 -14.559 -8.406 0.448  0.986  C1  4M5 23 
4M5 O25 O2  O 0 1 N N N N N N -16.634 -28.171 -14.956 -9.144 0.292  2.096  O25 4M5 24 
4M5 O24 O3  O 0 1 N N N N N N -17.606 -30.104 -15.059 -8.637 -0.221 0.007  O24 4M5 25 
4M5 H1  H1  H 0 1 N N N N N N -4.167  -21.982 -13.729 6.440  1.039  1.217  H1  4M5 26 
4M5 H2  H2  H 0 1 N N N N N N -5.009  -23.345 -14.541 7.509  -0.382 1.303  H2  4M5 27 
4M5 H3  H3  H 0 1 N N N N N N -2.807  -23.529 -16.064 8.028  0.043  -1.259 H3  4M5 28 
4M5 H4  H4  H 0 1 N N N N N N -0.961  -23.622 -14.571 8.336  2.402  -1.525 H4  4M5 29 
4M5 H5  H5  H 0 1 N N N N N N -2.638  -21.792 -12.780 6.678  3.604  0.142  H5  4M5 30 
4M5 H6  H6  H 0 1 N N N N N N -2.349  -23.449 -12.147 7.135  2.370  1.340  H6  4M5 31 
4M5 H7  H7  H 0 1 N N N N N N -0.635  -21.866 -11.336 8.406  4.469  1.696  H7  4M5 32 
4M5 H8  H8  H 0 1 N N N N N N 0.085   -23.121 -12.400 9.491  3.136  1.231  H8  4M5 33 
4M5 H9  H9  H 0 1 N N N N N N -0.204  -21.465 -13.032 9.033  4.371  0.033  H9  4M5 34 
4M5 H10 H10 H 0 1 N N N N N N -5.327  -23.232 -16.993 5.346  -1.972 1.799  H10 4M5 35 
4M5 H11 H11 H 0 1 N N N N N N -5.263  -21.628 -17.800 4.284  -0.547 1.712  H11 4M5 36 
4M5 H12 H12 H 0 1 N N N N N N -7.434  -21.262 -17.423 3.189  -1.486 -0.305 H12 4M5 37 
4M5 H13 H13 H 0 1 N N N N N N -7.543  -22.981 -16.913 4.252  -2.911 -0.217 H13 4M5 38 
4M5 H14 H14 H 0 1 N N N N N N -7.340  -20.508 -15.070 3.188  -3.370 2.164  H14 4M5 39 
4M5 H15 H15 H 0 1 N N N N N N -8.145  -21.761 -13.341 0.832  -3.004 1.956  H15 4M5 40 
4M5 H16 H16 H 0 1 N N N N N N -8.913  -24.086 -14.982 0.492  -1.022 0.245  H16 4M5 41 
4M5 H17 H17 H 0 1 N N N N N N -7.250  -24.357 -14.360 1.773  -1.772 -0.736 H17 4M5 42 
4M5 H18 H18 H 0 1 N N N N N N -8.652  -23.353 -12.081 0.191  -3.880 -0.932 H18 4M5 43 
4M5 H19 H19 H 0 1 N N N N N N -9.713  -25.298 -11.435 -2.028 -3.068 -1.311 H19 4M5 44 
4M5 H20 H20 H 0 1 N N N N N N -8.997  -26.426 -14.215 -2.274 -0.806 0.034  H20 4M5 45 
4M5 H21 H21 H 0 1 N N N N N N -10.681 -26.508 -13.595 -0.639 -0.399 -0.540 H21 4M5 46 
4M5 H22 H22 H 0 1 N N N N N N -8.267  -27.781 -12.100 -1.620 -0.512 -2.989 H22 4M5 47 
4M5 H23 H23 H 0 1 N N N N N N -9.735  -29.577 -11.687 -3.761 0.557  -2.950 H23 4M5 48 
4M5 H24 H24 H 0 1 N N N N N N -11.520 -28.555 -13.869 -4.853 0.007  -0.600 H24 4M5 49 
4M5 H25 H25 H 0 1 N N N N N N -12.138 -28.096 -12.246 -3.253 0.339  0.106  H25 4M5 50 
4M5 H26 H26 H 0 1 N N N N N N -11.505 -30.972 -12.185 -3.482 2.789  -0.802 H26 4M5 51 
4M5 H27 H27 H 0 1 N N N N N N -13.706 -31.526 -12.865 -5.707 3.493  -0.271 H27 4M5 52 
4M5 H28 H28 H 0 1 N N N N N N -14.129 -29.509 -14.755 -7.342 1.685  -1.180 H28 4M5 53 
4M5 H29 H29 H 0 1 N N N N N N -14.133 -28.526 -13.252 -6.207 0.443  -0.600 H29 4M5 54 
4M5 H30 H30 H 0 1 N N N N N N -16.125 -29.432 -12.494 -6.557 1.211  1.731  H30 4M5 55 
4M5 H31 H31 H 0 1 N N N N N N -15.901 -30.967 -13.401 -7.693 2.453  1.151  H31 4M5 56 
4M5 H32 H32 H 0 1 N N N N N N -17.284 -28.007 -15.629 -9.850 -0.369 2.065  H32 4M5 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4M5 C16 C15 SING N N 1  
4M5 C16 C17 SING N N 2  
4M5 C15 C14 SING N N 3  
4M5 O23 C17 DOUB N N 4  
4M5 C17 C18 SING N N 5  
4M5 C14 C13 DOUB N Z 6  
4M5 C19 C18 SING N N 7  
4M5 C19 C20 DOUB N Z 8  
4M5 O24 C1  DOUB N N 9  
4M5 O25 C1  SING N N 10 
4M5 C1  C2  SING N N 11 
4M5 C13 C12 SING N N 12 
4M5 C20 C21 SING N N 13 
4M5 C12 C11 SING N N 14 
4M5 C3  C2  SING N N 15 
4M5 C3  C4  SING N N 16 
4M5 C9  C8  SING N N 17 
4M5 C9  C10 SING N N 18 
4M5 C4  C5  DOUB N Z 19 
4M5 C11 C10 DOUB N Z 20 
4M5 C21 C22 SING N N 21 
4M5 C6  C5  SING N N 22 
4M5 C6  C7  SING N N 23 
4M5 C8  C7  DOUB N Z 24 
4M5 C18 H1  SING N N 25 
4M5 C18 H2  SING N N 26 
4M5 C19 H3  SING N N 27 
4M5 C20 H4  SING N N 28 
4M5 C21 H5  SING N N 29 
4M5 C21 H6  SING N N 30 
4M5 C22 H7  SING N N 31 
4M5 C22 H8  SING N N 32 
4M5 C22 H9  SING N N 33 
4M5 C16 H10 SING N N 34 
4M5 C16 H11 SING N N 35 
4M5 C15 H12 SING N N 36 
4M5 C15 H13 SING N N 37 
4M5 C14 H14 SING N N 38 
4M5 C13 H15 SING N N 39 
4M5 C12 H16 SING N N 40 
4M5 C12 H17 SING N N 41 
4M5 C11 H18 SING N N 42 
4M5 C10 H19 SING N N 43 
4M5 C9  H20 SING N N 44 
4M5 C9  H21 SING N N 45 
4M5 C8  H22 SING N N 46 
4M5 C7  H23 SING N N 47 
4M5 C6  H24 SING N N 48 
4M5 C6  H25 SING N N 49 
4M5 C5  H26 SING N N 50 
4M5 C4  H27 SING N N 51 
4M5 C3  H28 SING N N 52 
4M5 C3  H29 SING N N 53 
4M5 C2  H30 SING N N 54 
4M5 C2  H31 SING N N 55 
4M5 O25 H32 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4M5 InChI            InChI                1.03  "InChI=1S/C22H32O3/c1-2-3-15-18-21(23)19-16-13-11-9-7-5-4-6-8-10-12-14-17-20-22(24)25/h3,5-8,11-15H,2,4,9-10,16-20H2,1H3,(H,24,25)/b7-5-,8-6-,13-11-,14-12-,15-3-" 
4M5 InChIKey         InChI                1.03  XXHHYIQPKMKZSU-BBBWWSJWSA-N                                                                                                                                        
4M5 SMILES_CANONICAL CACTVS               3.385 "CC\C=C/CC(=O)CC\C=C/C/C=C\C\C=C/C\C=C/CCC(O)=O"                                                                                                                   
4M5 SMILES           CACTVS               3.385 "CCC=CCC(=O)CCC=CCC=CCC=CCC=CCCC(O)=O"                                                                                                                             
4M5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC/C=C\CC(=O)CC/C=C\C/C=C\C/C=C\C/C=C\CCC(=O)O"                                                                                                                   
4M5 SMILES           "OpenEye OEToolkits" 2.0.4 "CCC=CCC(=O)CCC=CCC=CCC=CCC=CCCC(=O)O"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           4M5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4M5 "Create component" 2015-10-27 PDBJ 
4M5 "Initial release"  2016-07-06 RCSB 
4M5 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4M5 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C15 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
