data_K35
# 
_chem_comp.id                                    K35 
_chem_comp.name                                  "~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]pentanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H23 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        277.314 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K35 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NCX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K35 N1  N1  N 0 1 N N N N N N -14.281 19.776 31.001 0.601  0.367  -0.006 N1  K35 1  
K35 C6  C1  C 0 1 N N R N N N -13.082 20.001 30.201 -0.456 0.231  -1.011 C6  K35 2  
K35 C7  C2  C 0 1 N N S N N N -11.818 20.054 31.103 -0.872 -1.237 -1.120 C7  K35 3  
K35 C8  C3  C 0 1 N N S N N N -11.943 18.731 31.874 -1.391 -1.722 0.235  C8  K35 4  
K35 O2  O1  O 0 1 N N N N N N -10.998 18.676 32.871 -1.779 -3.093 0.134  O2  K35 5  
K35 C11 C4  C 0 1 N N R N N N -13.156 18.855 29.202 -1.664 1.074  -0.597 C11 K35 6  
K35 C12 C5  C 0 1 N N N N N N -14.349 18.957 28.277 -1.249 2.542  -0.489 C12 K35 7  
K35 O5  O2  O 0 1 N N N N N N -14.094 20.205 27.496 -2.400 3.344  -0.217 O5  K35 8  
K35 C10 C6  C 0 1 N N R N N N -12.940 17.528 29.899 -2.184 0.589  0.758  C10 K35 9  
K35 O4  O3  O 0 1 N N N N N N -12.520 16.649 28.788 -3.312 1.376  1.144  O4  K35 10 
K35 C9  C7  C 0 1 N N S N N N -11.761 17.535 30.859 -2.599 -0.879 0.649  C9  K35 11 
K35 O3  O4  O 0 1 N N N N N N -11.635 16.198 31.344 -3.085 -1.332 1.915  O3  K35 12 
K35 O1  O5  O 0 1 N Y N N N N -10.478 20.302 30.404 -1.903 -1.369 -2.100 O1  K35 13 
K35 H1  H1  H 0 1 N N N N N N -14.932 19.967 31.735 0.375  0.604  0.907  H1  K35 14 
K35 H4  H4  H 0 1 N N N N N N -13.167 20.955 29.659 -0.086 0.576  -1.977 H4  K35 15 
K35 H5  H5  H 0 1 N N N N N N -11.969 20.870 31.825 -0.011 -1.837 -1.414 H5  K35 16 
K35 H6  H6  H 0 1 N N N N N N -12.957 18.667 32.295 -0.605 -1.621 0.983  H6  K35 17 
K35 H7  H7  H 0 1 N N N N N N -11.125 19.403 33.469 -2.119 -3.468 0.958  H7  K35 18 
K35 H8  H8  H 0 1 N N N N N N -12.277 18.985 28.553 -2.451 0.973  -1.345 H8  K35 19 
K35 H9  H9  H 0 1 N N N N N N -15.283 19.039 28.851 -0.527 2.657  0.320  H9  K35 20 
K35 H10 H10 H 0 1 N N N N N N -14.404 18.083 27.611 -0.797 2.862  -1.428 H10 K35 21 
K35 H11 H11 H 0 1 N N N N N N -14.805 20.346 26.882 -2.211 4.289  -0.135 H11 K35 22 
K35 H12 H12 H 0 1 N N N N N N -13.858 17.171 30.388 -1.397 0.690  1.506  H12 K35 23 
K35 H13 H13 H 0 1 N N N N N N -12.355 15.774 29.120 -3.694 1.124  1.996  H13 K35 24 
K35 H14 H14 H 0 1 N N N N N N -10.865 17.768 30.265 -3.386 -0.980 -0.099 H14 K35 25 
K35 H15 H15 H 0 1 N N N N N N -10.907 16.149 31.952 -3.367 -2.257 1.920  H15 K35 26 
K35 H16 H16 H 0 1 N N N N N N -9.781  20.314 31.049 -2.216 -2.276 -2.222 H16 K35 27 
K35 C1  C8  C 0 1 N N N N N N ?       ?      ?      1.888  0.157  -0.349 C1  K35 28 
K35 C2  C9  C 0 1 N N N N N N ?       ?      ?      2.974  0.290  0.687  C2  K35 29 
K35 C3  C10 C 0 1 N N N N N N ?       ?      ?      4.331  0.002  0.042  C3  K35 30 
K35 C4  C11 C 0 1 N N N N N N ?       ?      ?      5.435  0.137  1.093  C4  K35 31 
K35 C5  C12 C 0 1 N N N N N N ?       ?      ?      6.792  -0.151 0.448  C5  K35 32 
K35 O6  O6  O 0 1 N N N N N N ?       ?      ?      2.171  -0.140 -1.490 O6  K35 33 
K35 H2  H2  H 0 1 N N N N N N ?       ?      ?      2.971  1.303  1.089  H2  K35 34 
K35 H3  H3  H 0 1 N N N N N N ?       ?      ?      2.797  -0.422 1.493  H3  K35 35 
K35 H17 H17 H 0 1 N N N N N N ?       ?      ?      4.335  -1.011 -0.360 H17 K35 36 
K35 H18 H18 H 0 1 N N N N N N ?       ?      ?      4.509  0.713  -0.765 H18 K35 37 
K35 H19 H19 H 0 1 N N N N N N ?       ?      ?      5.431  1.150  1.495  H19 K35 38 
K35 H20 H20 H 0 1 N N N N N N ?       ?      ?      5.258  -0.574 1.899  H20 K35 39 
K35 H21 H21 H 0 1 N N N N N N ?       ?      ?      6.795  -1.164 0.046  H21 K35 40 
K35 H22 H22 H 0 1 N N N N N N ?       ?      ?      6.969  0.561  -0.359 H22 K35 41 
K35 H23 H23 H 0 1 N N N N N N ?       ?      ?      7.578  -0.055 1.197  H23 K35 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K35 O5  C12 SING N N 1  
K35 C12 C11 SING N N 2  
K35 O4  C10 SING N N 3  
K35 C11 C10 SING N N 4  
K35 C11 C6  SING N N 5  
K35 C10 C9  SING N N 6  
K35 C6  N1  SING N N 7  
K35 C6  C7  SING N N 8  
K35 C9  O3  SING N N 9  
K35 C9  C8  SING N N 10 
K35 C7  C8  SING N N 11 
K35 C8  O2  SING N N 12 
K35 C7  O1  SING N N 13 
K35 N1  H1  SING N N 14 
K35 C6  H4  SING N N 15 
K35 C7  H5  SING N N 16 
K35 C8  H6  SING N N 17 
K35 O2  H7  SING N N 18 
K35 C11 H8  SING N N 19 
K35 C12 H9  SING N N 20 
K35 C12 H10 SING N N 21 
K35 O5  H11 SING N N 22 
K35 C10 H12 SING N N 23 
K35 O4  H13 SING N N 24 
K35 C9  H14 SING N N 25 
K35 O3  H15 SING N N 26 
K35 O1  H16 SING N N 27 
K35 N1  C1  SING N N 28 
K35 C1  C2  SING N N 29 
K35 C2  C3  SING N N 30 
K35 C3  C4  SING N N 31 
K35 C4  C5  SING N N 32 
K35 C1  O6  DOUB N N 33 
K35 C2  H2  SING N N 34 
K35 C2  H3  SING N N 35 
K35 C3  H17 SING N N 36 
K35 C3  H18 SING N N 37 
K35 C4  H19 SING N N 38 
K35 C4  H20 SING N N 39 
K35 C5  H21 SING N N 40 
K35 C5  H22 SING N N 41 
K35 C5  H23 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K35 InChI            InChI                1.03  "InChI=1S/C12H23NO6/c1-2-3-4-7(15)13-8-6(5-14)9(16)11(18)12(19)10(8)17/h6,8-12,14,16-19H,2-5H2,1H3,(H,13,15)/t6-,8+,9+,10-,11-,12-/m0/s1" 
K35 InChIKey         InChI                1.03  MGAGNOFUGFVZSZ-MIKCJTPRSA-N                                                                                                               
K35 SMILES_CANONICAL CACTVS               3.385 "CCCCC(=O)N[C@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO"                                                                               
K35 SMILES           CACTVS               3.385 "CCCCC(=O)N[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1CO"                                                                                      
K35 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCC(=O)N[C@@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1O)O)O)O)CO"                                                                             
K35 SMILES           "OpenEye OEToolkits" 2.0.6 "CCCCC(=O)NC1C(C(C(C(C1O)O)O)O)CO"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           K35 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K35 "Create component" 2017-03-07 EBI  
K35 "Initial release"  2017-10-04 RCSB 
K35 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            K35 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
