data_R25
# 
_chem_comp.id                                    R25 
_chem_comp.name                                  "propan-2-yl 2-[[4-(4-azanylpiperidin-1-yl)-2-methoxy-phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H34 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-26 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.619 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R25 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7A6N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R25 C01 C1  C 0 1 N N N 334.247 279.660 128.423 -3.834 4.322  0.738  C01 R25 1  
R25 C03 C2  C 0 1 Y N N 333.448 281.361 127.032 -3.146 2.206  -0.102 C03 R25 2  
R25 C04 C3  C 0 1 Y N N 332.512 281.829 127.977 -4.478 1.831  -0.087 C04 R25 3  
R25 C05 C4  C 0 1 Y N N 331.869 283.055 127.737 -4.845 0.558  -0.505 C05 R25 4  
R25 C07 C5  C 0 1 N N N 329.471 284.007 128.282 -6.353 -1.202 -0.969 C07 R25 5  
R25 C08 C6  C 0 1 N N N 328.377 283.085 128.868 -7.844 -1.533 -1.076 C08 R25 6  
R25 C09 C7  C 0 1 N N N 328.526 282.996 130.305 -8.498 -1.370 0.298  C09 R25 7  
R25 C11 C8  C 0 1 N N N 329.820 282.383 130.714 -8.273 0.061  0.795  C11 R25 8  
R25 C12 C9  C 0 1 N N N 331.011 283.240 130.240 -6.771 0.346  0.849  C12 R25 9  
R25 C13 C10 C 0 1 Y N N 332.111 283.840 126.592 -3.875 -0.338 -0.937 C13 R25 10 
R25 C14 C11 C 0 1 Y N N 333.033 283.372 125.649 -2.545 0.036  -0.953 C14 R25 11 
R25 C15 C12 C 0 1 Y N N 333.686 282.138 125.870 -2.176 1.308  -0.542 C15 R25 12 
R25 C17 C13 C 0 1 Y N N 334.654 281.816 123.492 0.160  0.737  -0.378 C17 R25 13 
R25 C19 C14 C 0 1 Y N N 335.669 281.430 121.525 0.711  -1.447 0.117  C19 R25 14 
R25 C20 C15 C 0 1 Y N N 334.657 282.198 120.926 2.067  -1.127 -0.023 C20 R25 15 
R25 C21 C16 C 0 1 N N N 334.719 282.344 119.328 3.108  -2.147 0.171  C21 R25 16 
R25 C23 C17 C 0 1 N N N 333.338 281.919 117.329 3.853  -4.334 0.772  C23 R25 17 
R25 C24 C18 C 0 1 N N N 332.983 280.418 117.350 3.496  -5.316 1.890  C24 R25 18 
R25 C25 C19 C 0 1 N N N 332.192 282.737 116.801 4.063  -5.103 -0.534 C25 R25 19 
R25 C27 C20 C 0 1 Y N N 333.636 282.742 121.708 2.406  0.205  -0.362 C27 R25 20 
R25 C28 C21 C 0 1 Y N N 332.460 283.613 121.195 3.817  0.603  -0.525 C28 R25 21 
R25 C29 C22 C 0 1 Y N N 332.437 284.465 120.003 4.673  0.187  -1.496 C29 R25 22 
R25 C31 C23 C 0 1 N N N 330.814 285.981 118.863 7.054  0.552  -2.178 C31 R25 23 
R25 C32 C24 C 0 1 Y N N 330.442 284.687 121.073 5.866  1.597  -0.215 C32 R25 24 
R25 C33 C25 C 0 1 Y N N 331.199 283.785 121.873 4.573  1.535  0.331  C33 R25 25 
R25 C34 C26 C 0 1 Y N N 330.653 283.281 123.028 4.257  2.281  1.464  C34 R25 26 
R25 C35 C27 C 0 1 Y N N 329.353 283.640 123.418 5.218  3.079  2.045  C35 R25 27 
R25 C36 C28 C 0 1 Y N N 328.582 284.554 122.597 6.495  3.141  1.506  C36 R25 28 
R25 C37 C29 C 0 1 Y N N 329.124 285.056 121.462 6.822  2.409  0.386  C37 R25 29 
R25 N06 N1  N 0 1 N N N 330.887 283.578 128.739 -6.191 0.177  -0.490 N06 R25 30 
R25 N10 N2  N 0 1 N N N 327.404 282.208 130.830 -7.897 -2.319 1.244  N10 R25 31 
R25 N16 N3  N 0 1 N N N 334.680 281.584 124.940 -0.825 1.687  -0.558 N16 R25 32 
R25 N18 N4  N 0 1 Y N N 335.632 281.274 122.771 -0.194 -0.504 -0.065 N18 R25 33 
R25 N30 N5  N 0 1 Y N N 331.238 285.069 119.939 5.888  0.770  -1.319 N30 R25 34 
R25 N38 N6  N 0 1 Y N N 333.675 282.525 122.965 1.427  1.092  -0.528 N38 R25 35 
R25 O02 O1  O 0 1 N N N 334.122 280.150 127.171 -2.785 3.452  0.306  O02 R25 36 
R25 O22 O2  O 0 1 N N N 333.478 282.347 118.708 2.773  -3.379 0.603  O22 R25 37 
R25 O26 O3  O 0 1 N N N 335.833 282.377 118.736 4.271  -1.878 -0.059 O26 R25 38 
R25 H1  H1  H 0 1 N N N 334.795 278.707 128.391 -4.539 4.474  -0.079 H1  R25 39 
R25 H2  H2  H 0 1 N N N 334.799 280.380 129.045 -4.351 3.875  1.586  H2  R25 40 
R25 H3  H3  H 0 1 N N N 333.248 279.494 128.853 -3.410 5.282  1.035  H3  R25 41 
R25 H4  H4  H 0 1 N N N 332.294 281.257 128.867 -5.232 2.527  0.250  H4  R25 42 
R25 H5  H5  H 0 1 N N N 329.285 285.038 128.617 -5.878 -1.888 -0.268 H5  R25 43 
R25 H6  H6  H 0 1 N N N 329.423 283.964 127.184 -5.887 -1.303 -1.949 H6  R25 44 
R25 H7  H7  H 0 1 N N N 327.386 283.497 128.629 -8.317 -0.856 -1.788 H7  R25 45 
R25 H8  H8  H 0 1 N N N 328.472 282.081 128.429 -7.964 -2.562 -1.417 H8  R25 46 
R25 H9  H9  H 0 1 N N N 328.473 284.009 130.731 -9.568 -1.563 0.217  H9  R25 47 
R25 H10 H10 H 0 1 N N N 329.899 281.380 130.270 -8.753 0.763  0.114  H10 R25 48 
R25 H11 H11 H 0 1 N N N 329.849 282.302 131.811 -8.701 0.171  1.792  H11 R25 49 
R25 H12 H12 H 0 1 N N N 331.944 282.682 130.407 -6.607 1.369  1.189  H12 R25 50 
R25 H13 H13 H 0 1 N N N 331.034 284.175 130.819 -6.293 -0.348 1.541  H13 R25 51 
R25 H14 H14 H 0 1 N N N 331.598 284.779 126.446 -4.161 -1.327 -1.261 H14 R25 52 
R25 H15 H15 H 0 1 N N N 333.244 283.948 124.760 -1.793 -0.660 -1.293 H15 R25 53 
R25 H16 H16 H 0 1 N N N 336.455 280.987 120.932 0.410  -2.453 0.371  H16 R25 54 
R25 H17 H17 H 0 1 N N N 334.255 282.094 116.747 4.770  -3.805 1.033  H17 R25 55 
R25 H18 H18 H 0 1 N N N 333.837 279.844 117.740 2.580  -5.846 1.629  H18 R25 56 
R25 H19 H19 H 0 1 N N N 332.108 280.257 117.997 4.307  -6.033 2.016  H19 R25 57 
R25 H20 H20 H 0 1 N N N 332.751 280.082 116.329 3.346  -4.769 2.820  H20 R25 58 
R25 H21 H21 H 0 1 N N N 332.471 283.801 116.797 4.318  -4.403 -1.330 H21 R25 59 
R25 H22 H22 H 0 1 N N N 331.954 282.416 115.776 4.874  -5.820 -0.407 H22 R25 60 
R25 H23 H23 H 0 1 N N N 331.311 282.592 117.444 3.147  -5.633 -0.795 H23 R25 61 
R25 H24 H24 H 0 1 N N N 333.245 284.587 119.297 4.424  -0.502 -2.290 H24 R25 62 
R25 H25 H25 H 0 1 N N N 329.790 286.330 119.060 7.052  1.285  -2.985 H25 R25 63 
R25 H26 H26 H 0 1 N N N 331.495 286.844 118.825 7.965  0.661  -1.590 H26 R25 64 
R25 H27 H27 H 0 1 N N N 330.841 285.450 117.900 7.012  -0.452 -2.600 H27 R25 65 
R25 H28 H28 H 0 1 N N N 331.228 282.603 123.641 3.264  2.235  1.885  H28 R25 66 
R25 H29 H29 H 0 1 N N N 328.929 283.237 124.326 4.977  3.659  2.923  H29 R25 67 
R25 H30 H30 H 0 1 N N N 327.580 284.833 122.889 7.241  3.771  1.969  H30 R25 68 
R25 H31 H31 H 0 1 N N N 328.554 285.739 120.850 7.819  2.464  -0.025 H31 R25 69 
R25 H32 H32 H 0 1 N N N 327.485 282.132 131.824 -8.314 -2.230 2.159  H32 R25 70 
R25 H33 H33 H 0 1 N N N 326.542 282.660 130.600 -7.972 -3.266 0.903  H33 R25 71 
R25 H35 H35 H 0 1 N N N 335.414 281.018 125.315 -0.583 2.616  -0.696 H35 R25 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R25 C25 C23 SING N N 1  
R25 C23 C24 SING N N 2  
R25 C23 O22 SING N N 3  
R25 O22 C21 SING N N 4  
R25 O26 C21 DOUB N N 5  
R25 C31 N30 SING N N 6  
R25 C21 C20 SING N N 7  
R25 N30 C29 SING Y N 8  
R25 N30 C32 SING Y N 9  
R25 C29 C28 DOUB Y N 10 
R25 C20 C19 DOUB Y N 11 
R25 C20 C27 SING Y N 12 
R25 C32 C37 DOUB Y N 13 
R25 C32 C33 SING Y N 14 
R25 C28 C27 SING N N 15 
R25 C28 C33 SING Y N 16 
R25 C37 C36 SING Y N 17 
R25 C19 N18 SING Y N 18 
R25 C27 N38 DOUB Y N 19 
R25 C33 C34 DOUB Y N 20 
R25 C36 C35 DOUB Y N 21 
R25 N18 C17 DOUB Y N 22 
R25 N38 C17 SING Y N 23 
R25 C34 C35 SING Y N 24 
R25 C17 N16 SING N N 25 
R25 N16 C15 SING N N 26 
R25 C14 C15 DOUB Y N 27 
R25 C14 C13 SING Y N 28 
R25 C15 C03 SING Y N 29 
R25 C13 C05 DOUB Y N 30 
R25 C03 O02 SING N N 31 
R25 C03 C04 DOUB Y N 32 
R25 O02 C01 SING N N 33 
R25 C05 C04 SING Y N 34 
R25 C05 N06 SING N N 35 
R25 C07 N06 SING N N 36 
R25 C07 C08 SING N N 37 
R25 N06 C12 SING N N 38 
R25 C08 C09 SING N N 39 
R25 C12 C11 SING N N 40 
R25 C09 C11 SING N N 41 
R25 C09 N10 SING N N 42 
R25 C01 H1  SING N N 43 
R25 C01 H2  SING N N 44 
R25 C01 H3  SING N N 45 
R25 C04 H4  SING N N 46 
R25 C07 H5  SING N N 47 
R25 C07 H6  SING N N 48 
R25 C08 H7  SING N N 49 
R25 C08 H8  SING N N 50 
R25 C09 H9  SING N N 51 
R25 C11 H10 SING N N 52 
R25 C11 H11 SING N N 53 
R25 C12 H12 SING N N 54 
R25 C12 H13 SING N N 55 
R25 C13 H14 SING N N 56 
R25 C14 H15 SING N N 57 
R25 C19 H16 SING N N 58 
R25 C23 H17 SING N N 59 
R25 C24 H18 SING N N 60 
R25 C24 H19 SING N N 61 
R25 C24 H20 SING N N 62 
R25 C25 H21 SING N N 63 
R25 C25 H22 SING N N 64 
R25 C25 H23 SING N N 65 
R25 C29 H24 SING N N 66 
R25 C31 H25 SING N N 67 
R25 C31 H26 SING N N 68 
R25 C31 H27 SING N N 69 
R25 C34 H28 SING N N 70 
R25 C35 H29 SING N N 71 
R25 C36 H30 SING N N 72 
R25 C37 H31 SING N N 73 
R25 N10 H32 SING N N 74 
R25 N10 H33 SING N N 75 
R25 N16 H35 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R25 InChI            InChI                1.03  "InChI=1S/C29H34N6O3/c1-18(2)38-28(36)22-16-31-29(33-27(22)23-17-34(3)25-8-6-5-7-21(23)25)32-24-10-9-20(15-26(24)37-4)35-13-11-19(30)12-14-35/h5-10,15-19H,11-14,30H2,1-4H3,(H,31,32,33)" 
R25 InChIKey         InChI                1.03  BUTQOIKDMKIAMT-UHFFFAOYSA-N                                                                                                                                                               
R25 SMILES_CANONICAL CACTVS               3.385 "COc1cc(ccc1Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)N5CCC(N)CC5"                                                                                                                         
R25 SMILES           CACTVS               3.385 "COc1cc(ccc1Nc2ncc(C(=O)OC(C)C)c(n2)c3cn(C)c4ccccc34)N5CCC(N)CC5"                                                                                                                         
R25 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)c1cnc(nc1c2cn(c3c2cccc3)C)Nc4ccc(cc4OC)N5CCC(CC5)N"                                                                                                                           
R25 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)c1cnc(nc1c2cn(c3c2cccc3)C)Nc4ccc(cc4OC)N5CCC(CC5)N"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           R25 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "propan-2-yl 2-[[4-(4-azanylpiperidin-1-yl)-2-methoxy-phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R25 "Create component" 2020-08-26 PDBE 
R25 "Initial release"  2023-05-03 RCSB 
# 
