data_RE5
#

_chem_comp.id                                   RE5
_chem_comp.name                                 "L-Glutamate Tenofovir"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H21 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-28
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       416.326
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RE5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AIF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RE5  C04  C1   C  0  1  N  N  S  17.196  27.408  172.505  -2.573  -1.048  -0.144  C04  RE5   1  
RE5  C05  C2   C  0  1  N  N  N  16.307  27.282  171.225  -2.276  -2.425  -0.680  C05  RE5   2  
RE5  C08  C3   C  0  1  N  N  N  16.920  28.831  173.090  -4.087  -0.866  -0.017  C08  RE5   3  
RE5  C09  C4   C  0  1  N  N  N  16.253  28.807  174.470  -4.385   0.481   0.644  C09  RE5   4  
RE5  C10  C5   C  0  1  N  N  N  15.577  30.141  174.842  -5.876   0.661   0.769  C10  RE5   5  
RE5  C13  C6   C  0  1  N  N  N  18.576  24.284  172.331   0.126   1.716  -1.743  C13  RE5   6  
RE5  C15  C7   C  0  1  N  N  R  17.029  22.797  171.294   1.594   2.906  -0.268  C15  RE5   7  
RE5  C16  C8   C  0  1  N  N  N  16.558  23.011  169.848   1.427   4.362  -0.709  C16  RE5   8  
RE5  C17  C9   C  0  1  N  N  N  15.875  22.136  172.124   2.972   2.721   0.369  C17  RE5   9  
RE5  C19  C10  C  0  1  Y  N  N  13.493  22.846  171.517   3.461   0.243   0.193  C19  RE5  10  
RE5  C21  C11  C  0  1  Y  N  N  11.936  22.085  170.070   4.139  -1.214  -1.450  C21  RE5  11  
RE5  C23  C12  C  0  1  Y  N  N  11.340  23.945  171.360   3.773  -2.104   0.648  C23  RE5  12  
RE5  C25  C13  C  0  1  Y  N  N  12.621  23.884  171.963   3.428  -0.822   1.109  C25  RE5  13  
RE5  C27  C14  C  0  1  Y  N  N  14.470  24.102  173.094   2.841   0.969   2.181  C27  RE5  14  
RE5  N03  N1   N  0  1  N  N  N  18.637  27.142  172.238  -2.033  -0.038  -1.063  N03  RE5  15  
RE5  N18  N2   N  0  1  Y  N  N  14.668  22.990  172.241   3.086   1.359   0.898  N18  RE5  16  
RE5  N20  N3   N  0  1  Y  N  N  13.175  21.915  170.557   3.819   0.004  -1.064  N20  RE5  17  
RE5  N22  N4   N  0  1  Y  N  N  10.984  23.035  170.398   4.122  -2.246  -0.627  N22  RE5  18  
RE5  N24  N5   N  0  1  N  N  N  10.421  24.898  171.708   3.758  -3.192   1.503  N24  RE5  19  
RE5  N26  N6   N  0  1  Y  N  N  13.243  24.666  172.951   3.041  -0.311   2.303  N26  RE5  20  
RE5  O01  O1   O  0  1  N  N  N  18.455  25.650  170.074  -0.584   1.051   0.780  O01  RE5  21  
RE5  O06  O2   O  0  1  N  N  N  16.521  28.068  170.258  -1.677  -2.551  -1.722  O06  RE5  22  
RE5  O07  O3   O  0  1  N  N  N  15.406  26.400  171.203  -2.678  -3.511  -0.002  O07  RE5  23  
RE5  O11  O4   O  0  1  N  N  N  14.318  30.230  174.823  -6.623  -0.200   0.370  O11  RE5  24  
RE5  O12  O5   O  0  1  N  N  N  16.300  31.130  175.157  -6.373   1.778   1.323  O12  RE5  25  
RE5  O14  O6   O  0  1  N  N  N  17.258  24.029  171.923   1.474   2.048  -1.404  O14  RE5  26  
RE5  O28  O7   O  0  1  N  N  N  20.706  25.662  171.350   0.495  -0.799  -0.555  O28  RE5  27  
RE5  P02  P1   P  0  1  N  N  N  19.220  25.831  171.352  -0.502   0.464  -0.576  P02  RE5  28  
RE5  H1   H1   H  0  1  N  N  N  16.834  26.671  173.236  -2.110  -0.933   0.836  H1   RE5  29  
RE5  H2   H2   H  0  1  N  N  N  17.878  29.364  173.176  -4.540  -0.893  -1.008  H2   RE5  30  
RE5  H3   H3   H  0  1  N  N  N  16.261  29.371  172.394  -4.500  -1.669   0.594  H3   RE5  31  
RE5  H4   H4   H  0  1  N  N  N  15.490  28.015  174.475  -3.931   0.508   1.635  H4   RE5  32  
RE5  H5   H5   H  0  1  N  N  N  17.020  28.582  175.225  -3.972   1.284   0.033  H5   RE5  33  
RE5  H6   H6   H  0  1  N  N  N  19.210  23.413  172.111  -0.494   2.610  -1.685  H6   RE5  34  
RE5  H7   H7   H  0  1  N  N  N  18.599  24.490  173.411   0.094   1.316  -2.756  H7   RE5  35  
RE5  H8   H8   H  0  1  N  N  N  17.918  22.149  171.312   0.821   2.656   0.459  H8   RE5  36  
RE5  H9   H9   H  0  1  N  N  N  16.383  22.036  169.371   0.482   4.475  -1.240  H9   RE5  37  
RE5  H10  H10  H  0  1  N  N  N  15.623  23.591  169.849   1.431   5.010   0.168  H10  RE5  38  
RE5  H11  H11  H  0  1  N  N  N  17.330  23.560  169.289   2.250   4.638  -1.368  H11  RE5  39  
RE5  H12  H12  H  0  1  N  N  N  15.589  21.194  171.634   3.745   2.884  -0.382  H12  RE5  40  
RE5  H13  H13  H  0  1  N  N  N  16.251  21.924  173.136   3.097   3.437   1.181  H13  RE5  41  
RE5  H14  H14  H  0  1  N  N  N  11.638  21.377  169.311   4.429  -1.373  -2.478  H14  RE5  42  
RE5  H15  H15  H  0  1  N  N  N  15.216  24.464  173.786   2.526   1.625   2.979  H15  RE5  43  
RE5  H16  H16  H  0  1  N  N  N  19.068  27.071  173.138  -2.662   0.748  -1.146  H16  RE5  44  
RE5  H17  H17  H  0  1  N  N  N   9.587  24.769  171.172   3.508  -3.074   2.433  H17  RE5  45  
RE5  H18  H18  H  0  1  N  N  N  10.207  24.815  172.681   3.999  -4.072   1.173  H18  RE5  46  
RE5  H19  H19  H  0  1  N  N  N  14.947  26.436  170.372  -2.464  -4.373  -0.386  H19  RE5  47  
RE5  H20  H20  H  0  1  N  N  N  15.747  31.877  175.355  -7.336   1.848   1.381  H20  RE5  48  
RE5  H21  H21  H  0  1  N  N  N  20.999  25.445  170.473   0.597  -1.234  -1.413  H21  RE5  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RE5  C16  C15  SING  N  N   1  
RE5  C21  N22  DOUB  Y  N   2  
RE5  C21  N20  SING  Y  N   3  
RE5  O01  P02  DOUB  N  N   4  
RE5  O06  C05  DOUB  N  N   5  
RE5  N22  C23  SING  Y  N   6  
RE5  N20  C19  DOUB  Y  N   7  
RE5  O07  C05  SING  N  N   8  
RE5  C05  C04  SING  N  N   9  
RE5  C15  O14  SING  N  N  10  
RE5  C15  C17  SING  N  N  11  
RE5  O28  P02  SING  N  N  12  
RE5  P02  N03  SING  N  N  13  
RE5  P02  C13  SING  N  N  14  
RE5  C23  N24  SING  N  N  15  
RE5  C23  C25  DOUB  Y  N  16  
RE5  C19  C25  SING  Y  N  17  
RE5  C19  N18  SING  Y  N  18  
RE5  O14  C13  SING  N  N  19  
RE5  C25  N26  SING  Y  N  20  
RE5  C17  N18  SING  N  N  21  
RE5  N03  C04  SING  N  N  22  
RE5  N18  C27  SING  Y  N  23  
RE5  C04  C08  SING  N  N  24  
RE5  N26  C27  DOUB  Y  N  25  
RE5  C08  C09  SING  N  N  26  
RE5  C09  C10  SING  N  N  27  
RE5  O11  C10  DOUB  N  N  28  
RE5  C10  O12  SING  N  N  29  
RE5  C04  H1   SING  N  N  30  
RE5  C08  H2   SING  N  N  31  
RE5  C08  H3   SING  N  N  32  
RE5  C09  H4   SING  N  N  33  
RE5  C09  H5   SING  N  N  34  
RE5  C13  H6   SING  N  N  35  
RE5  C13  H7   SING  N  N  36  
RE5  C15  H8   SING  N  N  37  
RE5  C16  H9   SING  N  N  38  
RE5  C16  H10  SING  N  N  39  
RE5  C16  H11  SING  N  N  40  
RE5  C17  H12  SING  N  N  41  
RE5  C17  H13  SING  N  N  42  
RE5  C21  H14  SING  N  N  43  
RE5  C27  H15  SING  N  N  44  
RE5  N03  H16  SING  N  N  45  
RE5  N24  H17  SING  N  N  46  
RE5  N24  H18  SING  N  N  47  
RE5  O07  H19  SING  N  N  48  
RE5  O12  H20  SING  N  N  49  
RE5  O28  H21  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RE5  InChI             InChI                 1.03   "InChI=1S/C14H21N6O7P/c1-8(4-20-6-18-11-12(15)16-5-17-13(11)20)27-7-28(25,26)19-9(14(23)24)2-3-10(21)22/h5-6,8-9H,2-4,7H2,1H3,(H,21,22)(H,23,24)(H2,15,16,17)(H2,19,25,26)/t8-,9+/m1/s1"  
RE5  InChIKey          InChI                 1.03   CIXAAKVRZFPIJB-BDAKNGLRSA-N  
RE5  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[C@@H](CCC(O)=O)C(O)=O"  
RE5  SMILES            CACTVS                3.385  "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(=O)N[CH](CCC(O)=O)C(O)=O"  
RE5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(N[C@@H](CCC(=O)O)C(=O)O)O"  
RE5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(Cn1cnc2c1ncnc2N)OCP(=O)(NC(CCC(=O)O)C(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          RE5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RE5  "Create component"  2020-09-28  PDBE  
RE5  "Initial release"   2021-01-13  RCSB  
RE5  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RE5
_pdbx_chem_comp_synonyms.name        "(2~{S})-2-[[[(2~{R})-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-oxidanyl-phosphoryl]amino]pentanedioic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
