data_VP5
# 
_chem_comp.id                                    VP5 
_chem_comp.name                                  "(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H11 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-23 
_chem_comp.pdbx_modified_date                    2024-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        177.155 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VP5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OHV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VP5 C4  C1  C 0 1 N N N N N N 10.140 -10.175 -22.315 -1.798 1.207  -0.609 C4  VP5 1  
VP5 C5  C2  C 0 1 N N N N N N 10.489 -10.730 -20.943 -1.634 -0.197 -0.024 C5  VP5 2  
VP5 C6  C3  C 0 1 N N R N N N 10.006 -9.751  -19.861 -0.212 -0.696 -0.297 C6  VP5 3  
VP5 N1  N1  N 0 1 N N N N N N 8.678  -9.920  -22.415 -0.817 2.112  0.003  N1  VP5 4  
VP5 C3  C4  C 0 1 N N N N N N 8.234  -8.923  -21.442 0.557  1.680  -0.286 C3  VP5 5  
VP5 O1  O1  O 0 1 N N N N N N 8.363  -7.160  -19.387 2.374  -1.171 -0.646 O1  VP5 6  
VP5 C1  C5  C 0 1 N N N N N N 8.147  -8.316  -19.029 2.194  -0.163 -0.006 C1  VP5 7  
VP5 O2  O2  O 0 1 N N N N N N 7.562  -8.624  -17.982 3.243  0.555  0.425  O2  VP5 8  
VP5 C2  C6  C 0 1 N N S N N N 8.522  -9.398  -20.021 0.791  0.289  0.310  C2  VP5 9  
VP5 O3  O3  O 0 1 N N N N N N 9.790  -11.946 -20.720 -1.863 -0.156 1.386  O3  VP5 10 
VP5 O4  O4  O 0 1 N N N N N N 11.875 -10.970 -20.820 -2.575 -1.082 -0.635 O4  VP5 11 
VP5 O5  O5  O 0 1 N N N N N N 10.248 -10.320 -18.578 -0.035 -1.983 0.297  O5  VP5 12 
VP5 H1  H1  H 0 1 N N N N N N 10.435 -10.902 -23.086 -1.637 1.173  -1.687 H1  VP5 13 
VP5 H2  H2  H 0 1 N N N N N N 10.684 -9.232  -22.474 -2.805 1.571  -0.404 H2  VP5 14 
VP5 H3  H3  H 0 1 N N N N N N 10.587 -8.823  -19.963 -0.051 -0.765 -1.373 H3  VP5 15 
VP5 H4  H4  H 0 1 N N N N N N 8.469  -9.590  -23.335 -0.966 3.064  -0.296 H4  VP5 16 
VP5 H6  H6  H 0 1 N N N N N N 8.767  -7.978  -21.623 0.707  1.643  -1.365 H6  VP5 17 
VP5 H7  H7  H 0 1 N N N N N N 7.152  -8.761  -21.557 1.260  2.387  0.155  H7  VP5 18 
VP5 H8  H8  H 0 1 N N N N N N 7.314  -7.836  -17.513 4.123  0.225  0.199  H8  VP5 19 
VP5 H9  H9  H 0 1 N N N N N N 7.920  -10.296 -19.817 0.655  0.329  1.390  H9  VP5 20 
VP5 H10 H10 H 0 1 N N N N N N 10.013 -12.287 -19.862 -2.746 0.154  1.632  H10 VP5 21 
VP5 H11 H11 H 0 1 N N N N N N 12.061 -11.315 -19.955 -3.498 -0.825 -0.505 H11 VP5 22 
VP5 H12 H12 H 0 1 N N N N N N 9.952  -9.720  -17.904 -0.642 -2.658 -0.038 H12 VP5 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VP5 N1 C4  SING N N 1  
VP5 N1 C3  SING N N 2  
VP5 C4 C5  SING N N 3  
VP5 C3 C2  SING N N 4  
VP5 C5 O4  SING N N 5  
VP5 C5 O3  SING N N 6  
VP5 C5 C6  SING N N 7  
VP5 C2 C6  SING N N 8  
VP5 C2 C1  SING N N 9  
VP5 C6 O5  SING N N 10 
VP5 O1 C1  DOUB N N 11 
VP5 C1 O2  SING N N 12 
VP5 C4 H1  SING N N 13 
VP5 C4 H2  SING N N 14 
VP5 C6 H3  SING N N 15 
VP5 N1 H4  SING N N 16 
VP5 C3 H6  SING N N 17 
VP5 C3 H7  SING N N 18 
VP5 O2 H8  SING N N 19 
VP5 C2 H9  SING N N 20 
VP5 O3 H10 SING N N 21 
VP5 O4 H11 SING N N 22 
VP5 O5 H12 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VP5 InChI            InChI                1.06  "InChI=1S/C6H11NO5/c8-4-3(5(9)10)1-7-2-6(4,11)12/h3-4,7-8,11-12H,1-2H2,(H,9,10)/t3-,4+/m0/s1" 
VP5 InChIKey         InChI                1.06  VJJFPBNJYGLWRR-IUYQGCFVSA-N                                                                   
VP5 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@H](CNCC1(O)O)C(O)=O"                                                              
VP5 SMILES           CACTVS               3.385 "O[CH]1[CH](CNCC1(O)O)C(O)=O"                                                                 
VP5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@H](C(CN1)(O)O)O)C(=O)O"                                                          
VP5 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(CN1)(O)O)O)C(=O)O"                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           VP5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},4~{R})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VP5 "Create component" 2023-03-23 PDBE 
VP5 "Initial release"  2024-01-10 RCSB 
# 
