data_B16
#

_chem_comp.id                                   B16
_chem_comp.name                                 "1,6-di-O-phosphono-beta-D-glucopyranose"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 O12 P2"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        "1,6-di-O-phosphono-beta-D-glucose; 1,6-di-O-phosphono-D-glucose; 1,6-di-O-phosphono-glucose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-12-06
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       340.116
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B16
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2I55
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  B16  "1,6-di-O-phosphono-beta-D-glucose"  PDB  ?  
2  B16  "1,6-di-O-phosphono-D-glucose"       PDB  ?  
3  B16  "1,6-di-O-phosphono-glucose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B16  P       P       P  0  1  N  N  N  18.846  -4.563  -5.173   3.938  -0.766  -0.015  P       B16   1  
B16  "P'"    "P'"    P  0  1  N  N  N  24.422  -4.793   0.464  -2.632  -2.191  -0.048  "P'"    B16   2  
B16  C1      C1      C  0  1  N  N  S  22.631  -3.766  -1.155  -1.691   0.310  -0.025  C1      B16   3  
B16  O1      O1      O  0  1  N  N  N  23.874  -4.393  -0.991  -2.422  -0.738   0.614  O1      B16   4  
B16  C2      C2      C  0  1  N  N  R  22.776  -2.451  -1.874  -2.259   1.665   0.406  C2      B16   5  
B16  O2      O2      O  0  1  N  N  N  23.961  -1.803  -1.439  -3.618   1.771  -0.020  O2      B16   6  
B16  C3      C3      C  0  1  N  N  S  21.522  -1.708  -1.450  -1.432   2.784  -0.235  C3      B16   7  
B16  O3      O3      O  0  1  N  N  N  21.558  -0.357  -1.917  -1.908   4.051   0.221  O3      B16   8  
B16  C4      C4      C  0  1  N  N  S  20.288  -2.513  -1.910   0.036   2.613   0.167  C4      B16   9  
B16  O4      O4      O  0  1  N  N  N  19.177  -2.071  -1.128   0.828   3.609  -0.485  O4      B16  10  
B16  C5      C5      C  0  1  N  N  R  20.390  -4.051  -1.707   0.515   1.222  -0.256  C5      B16  11  
B16  O5      O5      O  0  1  N  N  N  21.722  -4.533  -1.920  -0.315   0.229   0.351  O5      B16  12  
B16  C6      C6      C  0  1  N  N  N  19.432  -4.876  -2.569   1.963   1.021   0.195  C6      B16  13  
B16  O6      O6      O  0  1  N  N  N  19.844  -4.788  -3.927   2.447  -0.229  -0.299  O6      B16  14  
B16  O1P     O1P     O  0  1  N  N  N  18.541  -5.990  -5.617   4.119  -1.038   1.561  O1P     B16  15  
B16  O2P     O2P     O  0  1  N  N  N  19.692  -3.818  -6.188   4.180  -2.135  -0.828  O2P     B16  16  
B16  O3P     O3P     O  0  1  N  N  N  17.681  -3.755  -4.642   4.921   0.250  -0.456  O3P     B16  17  
B16  O1X     O1X     O  0  1  N  N  N  24.675  -6.277   0.368  -3.521  -2.050  -1.383  O1X     B16  18  
B16  O2X     O2X     O  0  1  N  N  N  25.634  -3.923   0.435  -1.314  -2.771  -0.392  O2X     B16  19  
B16  O3X     O3X     O  0  1  N  N  N  23.417  -4.450   1.514  -3.385  -3.154   0.999  O3X     B16  20  
B16  H1      H1      H  0  1  N  N  N  22.191  -3.565  -0.167  -1.779   0.207  -1.107  H1      B16  21  
B16  H2      H2      H  0  1  N  N  N  22.775  -2.608  -2.963  -2.209   1.751   1.492  H2      B16  22  
B16  HO2     HO2     H  0  1  N  Y  N  24.053  -0.973  -1.892  -4.199   1.090   0.345  HO2     B16  23  
B16  H3      H3      H  0  1  N  N  N  21.506  -1.695  -0.350  -1.523   2.728  -1.320  H3      B16  24  
B16  HO3     HO3     H  0  1  N  Y  N  20.768   0.094  -1.644  -2.835   4.223   0.006  HO3     B16  25  
B16  H4      H4      H  0  1  N  N  N  20.110  -2.310  -2.976   0.133   2.720   1.247  H4      B16  26  
B16  HO4     HO4     H  0  1  N  Y  N  18.397  -2.548  -1.387   0.576   4.516  -0.266  HO4     B16  27  
B16  H5      H5      H  0  1  N  N  N  20.122  -4.246  -0.658   0.456   1.131  -1.341  H5      B16  28  
B16  H61     H6      H  0  1  N  N  N  19.454  -5.927  -2.244   2.580   1.830  -0.195  H61     B16  29  
B16  H62     H6A     H  0  1  N  N  N  18.410  -4.482  -2.467   2.008   1.023   1.284  H62     B16  30  
B16  HO1P    HO1P    H  0  0  N  N  N  17.617  -6.172  -5.489   3.506  -1.695   1.920  HO1P    B16  31  
B16  HO2P    HO2P    H  0  0  N  N  N  19.335  -2.947  -6.320   5.060  -2.516  -0.703  HO2P    B16  32  
B16  HO1X    HO1X    H  0  0  N  N  N  25.609  -6.436   0.301  -4.399  -1.676  -1.232  HO1X    B16  33  
B16  HO3X    HO3X    H  0  0  N  N  N  23.724  -3.703   2.014  -3.545  -4.048   0.667  HO3X    B16  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B16  P      O6    SING  N  N   1  
B16  P      O1P   SING  N  N   2  
B16  P      O2P   SING  N  N   3  
B16  P      O3P   DOUB  N  N   4  
B16  "P'"   O1    SING  N  N   5  
B16  "P'"   O1X   SING  N  N   6  
B16  "P'"   O2X   DOUB  N  N   7  
B16  "P'"   O3X   SING  N  N   8  
B16  C1     O1    SING  N  N   9  
B16  C1     C2    SING  N  N  10  
B16  C1     O5    SING  N  N  11  
B16  C2     O2    SING  N  N  12  
B16  C2     C3    SING  N  N  13  
B16  C3     O3    SING  N  N  14  
B16  C3     C4    SING  N  N  15  
B16  C4     O4    SING  N  N  16  
B16  C4     C5    SING  N  N  17  
B16  C5     O5    SING  N  N  18  
B16  C5     C6    SING  N  N  19  
B16  C6     O6    SING  N  N  20  
B16  C1     H1    SING  N  N  21  
B16  C2     H2    SING  N  N  22  
B16  O2     HO2   SING  N  N  23  
B16  C3     H3    SING  N  N  24  
B16  O3     HO3   SING  N  N  25  
B16  C4     H4    SING  N  N  26  
B16  O4     HO4   SING  N  N  27  
B16  C5     H5    SING  N  N  28  
B16  C6     H61   SING  N  N  29  
B16  C6     H62   SING  N  N  30  
B16  O1P    HO1P  SING  N  N  31  
B16  O2P    HO2P  SING  N  N  32  
B16  O1X    HO1X  SING  N  N  33  
B16  O3X    HO3X  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B16  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(OP(=O)(O)O)C(O)C(O)C1O"  
B16  InChI             InChI                 1.03   "InChI=1S/C6H14O12P2/c7-3-2(1-16-19(10,11)12)17-6(5(9)4(3)8)18-20(13,14)15/h2-9H,1H2,(H2,10,11,12)(H2,13,14,15)/t2-,3-,4+,5-,6+/m1/s1"  
B16  InChIKey          InChI                 1.03   RWHOZGRAXYWRNX-DVKNGEFBSA-N  
B16  SMILES_CANONICAL  CACTVS                3.370  "O[C@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@@H](O[P](O)(O)=O)[C@@H]1O"  
B16  SMILES            CACTVS                3.370  "O[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH](O[P](O)(O)=O)[CH]1O"  
B16  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OP(=O)(O)O)O)O)O)OP(=O)(O)O"  
B16  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B16  "SYSTEMATIC NAME"            ACDLabs               12.01  "1,6-di-O-phosphono-beta-D-glucopyranose"  
B16  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.7.6  "[(2S,3R,4S,5S,6R)-3,4,5-tris(oxidanyl)-6-(phosphonooxymethyl)oxan-2-yl] dihydrogen phosphate"  
B16  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-Glcp1PO36PO3  
#
_pdbx_chem_comp_related.comp_id            B16
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  B16  C1   BGC  C1   "Carbohydrate core"  
 2  B16  C2   BGC  C2   "Carbohydrate core"  
 3  B16  C3   BGC  C3   "Carbohydrate core"  
 4  B16  C4   BGC  C4   "Carbohydrate core"  
 5  B16  C5   BGC  C5   "Carbohydrate core"  
 6  B16  C6   BGC  C6   "Carbohydrate core"  
 7  B16  O1   BGC  O1   "Carbohydrate core"  
 8  B16  O2   BGC  O2   "Carbohydrate core"  
 9  B16  O3   BGC  O3   "Carbohydrate core"  
10  B16  O4   BGC  O4   "Carbohydrate core"  
11  B16  O5   BGC  O5   "Carbohydrate core"  
12  B16  O6   BGC  O6   "Carbohydrate core"  
13  B16  H1   BGC  H1   "Carbohydrate core"  
14  B16  H2   BGC  H2   "Carbohydrate core"  
15  B16  H3   BGC  H3   "Carbohydrate core"  
16  B16  H4   BGC  H4   "Carbohydrate core"  
17  B16  H5   BGC  H5   "Carbohydrate core"  
18  B16  H61  BGC  H61  "Carbohydrate core"  
19  B16  H62  BGC  H62  "Carbohydrate core"  
20  B16  HO2  BGC  HO2  "Carbohydrate core"  
21  B16  HO3  BGC  HO3  "Carbohydrate core"  
22  B16  HO4  BGC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
B16  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
B16  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
B16  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
B16  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B16  "Create component"          2011-12-06  PDBJ  
B16  "Other modification"        2020-07-03  RCSB  
B16  "Modify parent residue"     2020-07-17  RCSB  
B16  "Modify synonyms"           2020-07-17  RCSB  
B16  "Modify atom id"            2020-07-17  RCSB  
B16  "Modify component atom id"  2020-07-17  RCSB  
B16  "Modify leaving atom flag"  2020-07-17  RCSB  
##
