data_ED6
# 
_chem_comp.id                                    ED6 
_chem_comp.name                                  6-deoxy-1-O-phosphono-beta-L-galactopyranose 
_chem_comp.type                                  L-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H13 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               FUL 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-12-11 
_chem_comp.pdbx_modified_date                    2025-02-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        244.136 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ED6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6LH3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ED6 O3P O1  O 0 1 N N N N N N -0.964 -38.147 -18.946 3.031  -0.814 1.231  O3P ED6 1  
ED6 PB  P1  P 0 1 N N N N N N 0.396  -38.726 -19.240 2.666  0.117  -0.031 PB  ED6 2  
ED6 O2P O2  O 0 1 N N N N N N 0.376  -40.227 -19.009 3.769  -0.088 -1.186 O2P ED6 3  
ED6 O1  O3  O 0 1 N N N N N N 1.540  -38.016 -18.229 1.215  -0.290 -0.596 O1  ED6 4  
ED6 C1  C1  C 0 1 N N R N N N 1.411  -38.180 -16.854 0.011  -0.120 0.155  C1  ED6 5  
ED6 O5  O4  O 0 1 N N N N N N 2.500  -39.094 -16.380 -0.537 1.173  -0.109 O5  ED6 6  
ED6 C5  C2  C 0 1 N N S N N N 2.559  -39.212 -14.918 -1.735 1.457  0.616  C5  ED6 7  
ED6 C6  C3  C 0 1 N N N N N N 3.813  -39.934 -14.555 -2.212 2.871  0.278  C6  ED6 8  
ED6 C4  C4  C 0 1 N N S N N N 2.568  -37.841 -14.210 -2.817 0.447  0.227  C4  ED6 9  
ED6 O4  O5  O 0 1 N N N N N N 3.846  -37.226 -14.422 -3.114 0.577  -1.165 O4  ED6 10 
ED6 C3  C5  C 0 1 N N R N N N 1.496  -36.924 -14.706 -2.308 -0.970 0.512  C3  ED6 11 
ED6 O3  O6  O 0 1 N N N N N N 1.704  -35.592 -14.135 -3.283 -1.923 0.084  O3  ED6 12 
ED6 C2  C6  C 0 1 N N S N N N 1.496  -36.807 -16.181 -1.000 -1.195 -0.253 C2  ED6 13 
ED6 O2  O7  O 0 1 N N N N N N 0.360  -36.005 -16.585 -0.479 -2.487 0.063  O2  ED6 14 
ED6 O1P O8  O 0 1 N N N N N N 0.790  -38.421 -20.805 2.651  1.536  0.391  O1P ED6 15 
ED6 H6  H1  H 0 1 N N N N N N -1.306 -37.728 -19.727 3.059  -1.759 1.028  H6  ED6 16 
ED6 H7  H2  H 0 1 N N N N N N 0.595  -40.675 -19.817 4.669  0.139  -0.914 H7  ED6 17 
ED6 H1  H3  H 0 1 N N N N N N 0.437  -38.629 -16.610 0.231  -0.213 1.218  H1  ED6 18 
ED6 H5  H4  H 0 1 N N N N N N 1.692  -39.787 -14.559 -1.539 1.386  1.686  H5  ED6 19 
ED6 H61 H5  H 0 1 N N N N N N 3.876  -40.033 -13.461 -2.409 2.942  -0.792 H61 ED6 20 
ED6 H62 H6  H 0 1 N N N N N N 3.806  -40.934 -15.014 -3.126 3.088  0.830  H62 ED6 21 
ED6 H63 H7  H 0 1 N N N N N N 4.681  -39.368 -14.923 -1.441 3.591  0.554  H63 ED6 22 
ED6 H4  H8  H 0 1 N N N N N N 2.416  -38.011 -13.134 -3.718 0.635  0.810  H4  ED6 23 
ED6 HO4 H9  H 0 1 N Y N N N N 3.866  -36.380 -13.991 -3.438 1.452  -1.418 HO4 ED6 24 
ED6 H3  H10 H 0 1 N N N N N N 0.520  -37.310 -14.378 -2.131 -1.085 1.581  H3  ED6 25 
ED6 HO3 H11 H 0 1 N Y N N N N 1.707  -35.650 -13.187 -3.026 -2.843 0.235  HO3 ED6 26 
ED6 H2  H12 H 0 1 N N N N N N 2.427  -36.317 -16.504 -1.189 -1.129 -1.324 H2  ED6 27 
ED6 HO2 H13 H 0 1 N Y N N N N 0.410  -35.152 -16.169 0.353  -2.695 -0.384 HO2 ED6 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ED6 O1P PB  DOUB N N 1  
ED6 PB  O2P SING N N 2  
ED6 PB  O3P SING N N 3  
ED6 PB  O1  SING N N 4  
ED6 O1  C1  SING N N 5  
ED6 C1  O5  SING N N 6  
ED6 C1  C2  SING N N 7  
ED6 O2  C2  SING N N 8  
ED6 O5  C5  SING N N 9  
ED6 C2  C3  SING N N 10 
ED6 C5  C6  SING N N 11 
ED6 C5  C4  SING N N 12 
ED6 C3  C4  SING N N 13 
ED6 C3  O3  SING N N 14 
ED6 O4  C4  SING N N 15 
ED6 O3P H6  SING N N 16 
ED6 O2P H7  SING N N 17 
ED6 C1  H1  SING N N 18 
ED6 C5  H5  SING N N 19 
ED6 C6  H61 SING N N 20 
ED6 C6  H62 SING N N 21 
ED6 C6  H63 SING N N 22 
ED6 C4  H4  SING N N 23 
ED6 O4  HO4 SING N N 24 
ED6 C3  H3  SING N N 25 
ED6 O3  HO3 SING N N 26 
ED6 C2  H2  SING N N 27 
ED6 O2  HO2 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ED6 SMILES           ACDLabs              12.01 "OP(O)(OC1OC(C)C(O)C(O)C1O)=O"                                                                           
ED6 InChI            InChI                1.03  "InChI=1S/C6H13O8P/c1-2-3(7)4(8)5(9)6(13-2)14-15(10,11)12/h2-9H,1H3,(H2,10,11,12)/t2-,3+,4+,5-,6+/m0/s1" 
ED6 InChIKey         InChI                1.03  PTVXQARCLQPGIR-SXUWKVJYSA-N                                                                              
ED6 SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@H](O[P](O)(O)=O)[C@@H](O)[C@H](O)[C@@H]1O"                                                  
ED6 SMILES           CACTVS               3.385 "C[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"                                                          
ED6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)OP(=O)(O)O)O)O)O"                                                    
ED6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OP(=O)(O)O)O)O)O"                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ED6 "SYSTEMATIC NAME" ACDLabs              12.01 6-deoxy-1-O-phosphono-beta-L-galactopyranose                                                    
ED6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] dihydrogen phosphate" 
# 
_pdbx_chem_comp_related.comp_id             ED6 
_pdbx_chem_comp_related.related_comp_id     FUL 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  ED6 O1  FUL O1  "Carbohydrate core" 
2  ED6 C1  FUL C1  "Carbohydrate core" 
3  ED6 O5  FUL O5  "Carbohydrate core" 
4  ED6 C5  FUL C5  "Carbohydrate core" 
5  ED6 C6  FUL C6  "Carbohydrate core" 
6  ED6 C4  FUL C4  "Carbohydrate core" 
7  ED6 O4  FUL O4  "Carbohydrate core" 
8  ED6 C3  FUL C3  "Carbohydrate core" 
9  ED6 O3  FUL O3  "Carbohydrate core" 
10 ED6 C2  FUL C2  "Carbohydrate core" 
11 ED6 O2  FUL O2  "Carbohydrate core" 
12 ED6 H1  FUL H1  "Carbohydrate core" 
13 ED6 H5  FUL H5  "Carbohydrate core" 
14 ED6 H61 FUL H61 "Carbohydrate core" 
15 ED6 H62 FUL H62 "Carbohydrate core" 
16 ED6 H63 FUL H63 "Carbohydrate core" 
17 ED6 H4  FUL H4  "Carbohydrate core" 
18 ED6 HO4 FUL HO4 "Carbohydrate core" 
19 ED6 H3  FUL H3  "Carbohydrate core" 
20 ED6 HO3 FUL HO3 "Carbohydrate core" 
21 ED6 H2  FUL H2  "Carbohydrate core" 
22 ED6 HO2 FUL HO2 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ED6 "Create component" 2019-12-11 PDBJ 
ED6 "Modify atom id"   2020-07-23 RCSB 
ED6 "Initial release"  2025-03-05 RCSB 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
ED6 "CARBOHYDRATE ISOMER"                 L        PDB ? 
ED6 "CARBOHYDRATE RING"                   pyranose PDB ? 
ED6 "CARBOHYDRATE ANOMER"                 beta     PDB ? 
ED6 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
