data_RP6
#

_chem_comp.id                                   RP6
_chem_comp.name                                 "5-acetamido-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H21 N O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-10-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       331.318
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RP6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3O9J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RP6
_pdbx_chem_comp_synonyms.name        "5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RP6  CAA   CAA   C  0  1  N  N  N  -17.649  -19.998  -11.995   4.938   0.079   1.729  CAA   RP6   1  
RP6  C11   C11   C  0  1  N  N  N  -15.191  -25.548   -7.756  -1.095  -4.854   0.468  C11   RP6   2  
RP6  O10   O10   O  0  1  N  N  N  -16.531  -26.863   -9.135   0.113  -3.708  -1.204  O10   RP6   3  
RP6  O1A   O1A   O  0  1  N  N  N  -22.685  -23.034  -10.524   1.914   3.402   0.220  O1A   RP6   4  
RP6  O9    O9    O  0  1  N  N  N  -21.522  -28.957   -8.113  -5.087   2.361   0.263  O9    RP6   5  
RP6  O1B   O1B   O  0  1  N  N  N  -21.429  -21.602  -11.958   2.060   2.880  -1.934  O1B   RP6   6  
RP6  O8    O8    O  0  1  N  N  N  -22.240  -26.359   -7.697  -2.806   1.472   1.769  O8    RP6   7  
RP6  O4    O4    O  0  1  N  N  N  -17.044  -22.864   -9.605   2.211  -2.096  -0.437  O4    RP6   8  
RP6  O7    O7    O  0  1  N  N  N  -19.798  -27.126   -9.976  -2.412  -0.350  -1.386  O7    RP6   9  
RP6  CAJ   CAJ   C  0  1  N  N  N  -17.982  -21.127  -11.425   3.964   0.794   1.224  CAJ   RP6  10  
RP6  C9    C9    C  0  1  N  N  N  -22.063  -28.207   -9.192  -4.450   1.102   0.037  C9    RP6  11  
RP6  CAL   CAL   C  0  1  N  N  N  -18.886  -21.163  -10.444   3.441   0.488  -0.155  CAL   RP6  12  
RP6  N5    N5    N  0  1  N  N  N  -17.647  -25.308   -7.874  -0.617  -2.427   0.453  N5    RP6  13  
RP6  O6    O6    O  0  1  N  N  N  -20.655  -24.502   -9.897  -0.212   1.163  -0.310  O6    RP6  14  
RP6  C10   C10   C  0  1  N  N  N  -16.522  -25.962   -8.294  -0.489  -3.622  -0.155  C10   RP6  15  
RP6  C1    C1    C  0  1  N  N  N  -21.592  -22.489  -10.848   1.728   2.586  -0.661  C1    RP6  16  
RP6  C3    C3    C  0  1  N  N  N  -19.248  -22.512   -9.936   1.952   0.260  -0.089  C3    RP6  17  
RP6  C2    C2    C  0  1  N  N  N  -20.405  -23.119  -10.264   1.138   1.275  -0.338  C2    RP6  18  
RP6  C8    C8    C  0  1  N  N  R  -21.727  -26.788   -8.834  -2.961   1.215   0.371  C8    RP6  19  
RP6  C4    C4    C  0  1  N  N  S  -18.285  -23.170   -8.969   1.443  -1.113   0.258  C4    RP6  20  
RP6  C7    C7    C  0  1  N  N  R  -20.500  -26.384   -9.145  -2.256  -0.094   0.011  C7    RP6  21  
RP6  C5    C5    C  0  1  N  N  R  -18.517  -24.718   -8.882  -0.029  -1.230  -0.153  C5    RP6  22  
RP6  C6    C6    C  0  1  N  N  R  -20.023  -25.042   -8.733  -0.768   0.020   0.346  C6    RP6  23  
RP6  HAA   HAA   H  0  1  N  N  N  -18.108  -19.075  -11.673   5.314   0.299   2.717  HAA   RP6  24  
RP6  HAAA  HAAA  H  0  0  N  N  N  -16.915  -19.989  -12.787   5.364  -0.733   1.158  HAAA  RP6  25  
RP6  H111  H111  H  0  0  N  N  N  -14.401  -26.151   -8.228  -0.890  -5.719  -0.162  H111  RP6  26  
RP6  H112  H112  H  0  0  N  N  N  -15.021  -24.484   -7.977  -0.660  -5.012   1.455  H112  RP6  27  
RP6  H113  H113  H  0  0  N  N  N  -15.171  -25.705   -6.667  -2.172  -4.720   0.563  H113  RP6  28  
RP6  HO9   HO9   H  0  1  N  N  N  -21.689  -29.882   -8.254  -6.034   2.363   0.071  HO9   RP6  29  
RP6  HO1B  HO1B  H  0  0  N  N  N  -22.262  -21.493  -12.402   2.444   3.753  -2.097  HO1B  RP6  30  
RP6  HO8   HO8   H  0  1  N  N  N  -21.978  -25.458   -7.551  -3.174   0.783   2.338  HO8   RP6  31  
RP6  HO4   HO4   H  0  1  N  N  N  -16.329  -23.225   -9.095   3.155  -2.080  -0.226  HO4   RP6  32  
RP6  HO7   HO7   H  0  1  N  N  N  -18.946  -26.729  -10.114  -2.043   0.339  -1.956  HO7   RP6  33  
RP6  HAJ   HAJ   H  0  1  N  N  N  -17.518  -22.045  -11.754   3.536   1.604   1.796  HAJ   RP6  34  
RP6  H91   H91   H  0  1  N  N  N  -21.613  -28.499  -10.152  -4.908   0.344   0.672  H91   RP6  35  
RP6  H92   H92   H  0  1  N  N  N  -23.149  -28.354   -9.281  -4.567   0.819  -1.009  H92   RP6  36  
RP6  HAL   HAL   H  0  1  N  N  N  -18.473  -20.595   -9.598   3.650   1.327  -0.819  HAL   RP6  37  
RP6  H15   H15   H  0  1  N  N  N  -19.807  -20.701  -10.830   3.929  -0.409  -0.538  H15   RP6  38  
RP6  HN5   HN5   H  0  1  N  N  N  -17.866  -25.237   -6.901  -1.099  -2.358   1.293  HN5   RP6  39  
RP6  H8    H8    H  0  1  N  N  N  -22.307  -26.199   -9.560  -2.522   2.033  -0.199  H8    RP6  40  
RP6  H4    H4    H  0  1  N  N  N  -18.372  -22.827   -7.928   1.534  -1.273   1.332  H4    RP6  41  
RP6  H7    H7    H  0  1  N  N  N  -19.970  -26.674   -8.226  -2.696  -0.912   0.582  H7    RP6  42  
RP6  H5    H5    H  0  1  N  N  N  -18.223  -25.199   -9.827  -0.104  -1.293  -1.238  H5    RP6  43  
RP6  H6    H6    H  0  1  N  N  N  -20.208  -24.761   -7.686  -0.640   0.117   1.424  H6    RP6  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RP6  CAA  CAJ   DOUB  N  N   1  
RP6  C11  C10   SING  N  N   2  
RP6  O10  C10   DOUB  N  N   3  
RP6  O1A  C1    DOUB  N  N   4  
RP6  O9   C9    SING  N  N   5  
RP6  O1B  C1    SING  N  N   6  
RP6  O8   C8    SING  N  N   7  
RP6  O4   C4    SING  N  N   8  
RP6  O7   C7    SING  N  N   9  
RP6  CAJ  CAL   SING  N  N  10  
RP6  C9   C8    SING  N  N  11  
RP6  CAL  C3    SING  N  N  12  
RP6  N5   C10   SING  N  N  13  
RP6  N5   C5    SING  N  N  14  
RP6  O6   C2    SING  N  N  15  
RP6  O6   C6    SING  N  N  16  
RP6  C1   C2    SING  N  N  17  
RP6  C3   C2    DOUB  N  N  18  
RP6  C3   C4    SING  N  N  19  
RP6  C8   C7    SING  N  N  20  
RP6  C4   C5    SING  N  N  21  
RP6  C7   C6    SING  N  N  22  
RP6  C5   C6    SING  N  N  23  
RP6  CAA  HAA   SING  N  N  24  
RP6  CAA  HAAA  SING  N  N  25  
RP6  C11  H111  SING  N  N  26  
RP6  C11  H112  SING  N  N  27  
RP6  C11  H113  SING  N  N  28  
RP6  O9   HO9   SING  N  N  29  
RP6  O1B  HO1B  SING  N  N  30  
RP6  O8   HO8   SING  N  N  31  
RP6  O4   HO4   SING  N  N  32  
RP6  O7   HO7   SING  N  N  33  
RP6  CAJ  HAJ   SING  N  N  34  
RP6  C9   H91   SING  N  N  35  
RP6  C9   H92   SING  N  N  36  
RP6  CAL  HAL   SING  N  N  37  
RP6  CAL  H15   SING  N  N  38  
RP6  N5   HN5   SING  N  N  39  
RP6  C8   H8    SING  N  N  40  
RP6  C4   H4    SING  N  N  41  
RP6  C7   H7    SING  N  N  42  
RP6  C5   H5    SING  N  N  43  
RP6  C6   H6    SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RP6  SMILES            ACDLabs               12.01  "O=C(O)C=1OC(C(O)C(O)CO)C(NC(=O)C)C(O)C=1C/C=C"  
RP6  SMILES_CANONICAL  CACTVS                3.370  "CC(=O)N[C@@H]1[C@@H](O)C(=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O)CC=C"  
RP6  SMILES            CACTVS                3.370  "CC(=O)N[CH]1[CH](O)C(=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O)CC=C"  
RP6  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(=O)N[C@@H]1[C@H](C(=C(O[C@H]1C([C@@H](CO)O)O)C(=O)O)CC=C)O"  
RP6  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(=O)NC1C(C(=C(OC1C(C(CO)O)O)C(=O)O)CC=C)O"  
RP6  InChI             InChI                 1.03   "InChI=1S/C14H21NO8/c1-3-4-7-10(19)9(15-6(2)17)13(11(20)8(18)5-16)23-12(7)14(21)22/h3,8-11,13,16,18-20H,1,4-5H2,2H3,(H,15,17)(H,21,22)/t8-,9-,10+,11-,13-/m1/s1"  
RP6  InChIKey          InChI                 1.03   OXBQHTTZDDRTNB-BZNQNGANSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RP6  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid"  
RP6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,3R,4S)-3-acetamido-4-hydroxy-5-prop-2-enyl-2-[(2R)-1,2,3-trihydroxypropyl]-3,4-dihydro-2H-pyran-6-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RP6  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
RP6  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
RP6  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RP6  "Create component"          2010-10-27  RCSB  
RP6  "Modify descriptor"         2011-06-04  RCSB  
RP6  "Other modification"        2020-04-12  RCSB  
RP6  "Other modification"        2020-07-03  RCSB  
RP6  "Modify name"               2020-07-17  RCSB  
RP6  "Modify synonyms"           2020-07-17  RCSB  
RP6  "Modify component atom id"  2020-07-17  RCSB  
##
