data_S96
# 
_chem_comp.id                                    S96 
_chem_comp.name                                  "(7P)-3-{5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-7-(thiophen-2-yl)-3H-imidazo[4,5-b]pyridine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H18 N3 O13 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-27 
_chem_comp.pdbx_modified_date                    2023-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        573.302 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S96 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DH4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S96 C14 C1  C 0 1 N N N 16.651 34.084 -29.448 0.920   -2.311 -0.981 C14 S96 1  
S96 C15 C2  C 0 1 N N R 15.596 34.809 -30.333 -0.200  -2.462 0.049  C15 S96 2  
S96 C16 C3  C 0 1 N N S 14.940 33.762 -31.262 -1.149  -3.613 -0.353 C16 S96 3  
S96 C17 C4  C 0 1 N N R 16.105 33.518 -32.293 -2.550  -3.104 0.054  C17 S96 4  
S96 C18 C5  C 0 1 N N R 16.573 34.699 -32.505 -2.282  -1.706 0.654  C18 S96 5  
S96 C20 C6  C 0 1 Y N N 18.886 35.351 -31.832 -3.359  0.081  -0.763 C20 S96 6  
S96 C22 C7  C 0 1 Y N N 20.110 34.300 -33.369 -5.257  0.368  0.247  C22 S96 7  
S96 C23 C8  C 0 1 Y N N 21.221 33.688 -34.303 -6.539  0.748  0.699  C23 S96 8  
S96 C24 C9  C 0 1 Y N N 22.678 33.978 -34.042 -7.319  1.781  -0.008 C24 S96 9  
S96 C26 C10 C 0 1 Y N N 25.177 33.806 -34.032 -8.273  3.783  -1.183 C26 S96 10 
S96 C27 C11 C 0 1 Y N N 24.804 34.974 -33.281 -9.121  2.759  -1.044 C27 S96 11 
S96 C28 C12 C 0 1 Y N N 23.200 35.082 -33.289 -8.605  1.656  -0.399 C28 S96 12 
S96 C29 C13 C 0 1 Y N N 20.830 32.825 -35.438 -7.045  0.115  1.837  C29 S96 13 
S96 C30 C14 C 0 1 Y N N 19.382 32.540 -35.694 -6.285  -0.848 2.472  C30 S96 14 
S96 C32 C15 C 0 1 Y N N 18.766 34.033 -33.610 -4.555  -0.621 0.956  C32 S96 15 
S96 N19 N1  N 0 1 Y N N 18.022 34.689 -32.647 -3.358  -0.780 0.292  N19 S96 16 
S96 N21 N2  N 0 1 Y N N 20.188 35.105 -32.283 -4.474  0.753  -0.787 N21 S96 17 
S96 N31 N3  N 0 1 Y N N 18.348 33.123 -34.807 -5.089  -1.185 2.029  N31 S96 18 
S96 O02 O1  O 0 1 N N N 19.664 35.163 -27.372 3.964   -2.112 -1.663 O02 S96 19 
S96 O03 O2  O 0 1 N N N 17.537 34.713 -26.133 2.711   -0.212 -2.755 O03 S96 20 
S96 O04 O3  O 0 1 N N N 18.606 32.765 -27.592 4.039   0.133  -0.512 O04 S96 21 
S96 O06 O4  O 0 1 N N N 16.194 31.948 -27.051 6.450   -0.435 -0.998 O06 S96 22 
S96 O07 O5  O 0 1 N N N 17.823 30.314 -27.883 5.624   1.830  -1.746 O07 S96 23 
S96 O08 O6  O 0 1 N N N 18.043 31.180 -25.494 6.008   1.283  0.797  O08 S96 24 
S96 O10 O7  O 0 1 N N N 18.831 33.318 -24.289 8.446   0.681  1.052  O10 S96 25 
S96 O11 O8  O 0 1 N N N 18.003 31.412 -22.928 7.874   3.134  0.883  O11 S96 26 
S96 O12 O9  O 0 1 N N N 16.434 32.760 -24.279 7.304   1.740  3.039  O12 S96 27 
S96 O13 O10 O 0 1 N N N 17.442 35.000 -28.732 1.850   -1.322 -0.533 O13 S96 28 
S96 O33 O11 O 0 1 N N N 16.178 35.619 -31.179 -1.034  -1.283 0.062  O33 S96 29 
S96 O34 O12 O 0 1 N N N 15.563 32.913 -33.548 -3.131  -3.966 1.035  O34 S96 30 
S96 O35 O13 O 0 1 N N N 13.877 34.283 -31.874 -0.822  -4.805 0.364  O35 S96 31 
S96 P01 P1  P 0 1 N N N 18.321 34.436 -27.430 3.159   -0.905 -1.372 P01 S96 32 
S96 P05 P2  P 0 1 N N N 17.631 31.539 -27.017 5.550   0.679  -0.623 P05 S96 33 
S96 P09 P3  P 0 1 N N N 17.818 32.186 -24.229 7.430   1.688  1.434  P09 S96 34 
S96 S25 S1  S 0 1 Y N N 23.884 33.131 -34.541 -6.720  3.370  -0.466 S25 S96 35 
S96 H1  H1  H 0 1 N N N 16.129 33.429 -28.735 1.434   -3.265 -1.102 H1  S96 36 
S96 H2  H2  H 0 1 N N N 17.303 33.478 -30.094 0.496   -2.004 -1.937 H2  S96 37 
S96 H3  H3  H 0 1 N N N 14.835 35.288 -29.700 0.218   -2.644 1.040  H3  S96 38 
S96 H4  H4  H 0 1 N N N 14.726 32.836 -30.708 -1.104  -3.787 -1.428 H4  S96 39 
S96 H5  H5  H 0 1 N N N 16.841 32.837 -31.840 -3.197  -3.027 -0.820 H5  S96 40 
S96 H6  H6  H 0 1 N N N 16.117 35.180 -33.383 -2.186  -1.770 1.738  H6  S96 41 
S96 H8  H8  H 0 1 N N N 18.615 35.961 -30.983 -2.552  0.194  -1.472 H8  S96 42 
S96 H9  H9  H 0 1 N N N 26.185 33.461 -34.209 -8.506  4.723  -1.661 H9  S96 43 
S96 H10 H10 H 0 1 N N N 25.483 35.659 -32.796 -10.136 2.793  -1.412 H10 S96 44 
S96 H11 H11 H 0 1 N N N 22.616 35.853 -32.810 -9.184  0.762  -0.220 H11 S96 45 
S96 H12 H12 H 0 1 N N N 21.587 32.401 -36.081 -8.022  0.376  2.218  H12 S96 46 
S96 H13 H13 H 0 1 N N N 19.092 31.911 -36.523 -6.678  -1.336 3.351  H13 S96 47 
S96 H14 H14 H 0 1 N N N 18.050 35.277 -25.567 2.179   0.587  -2.640 H14 S96 48 
S96 H15 H15 H 0 1 N N N 16.991 30.063 -28.266 5.058   2.593  -1.564 H15 S96 49 
S96 H16 H16 H 0 1 N N N 18.712 31.798 -22.427 7.253   3.844  1.097  H16 S96 50 
S96 H17 H17 H 0 1 N N N 16.485 33.707 -24.337 8.125   1.978  3.490  H17 S96 51 
S96 H19 H19 H 0 1 N N N 16.273 32.770 -34.163 -3.265  -4.874 0.729  H19 S96 52 
S96 H20 H20 H 0 1 N N N 13.485 33.629 -32.441 -1.387  -5.560 0.150  H20 S96 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S96 C14 C15 SING N N 1  
S96 C14 O13 SING N N 2  
S96 C15 C16 SING N N 3  
S96 C15 O33 SING N N 4  
S96 C16 C17 SING N N 5  
S96 C16 O35 SING N N 6  
S96 C17 C18 SING N N 7  
S96 C17 O34 SING N N 8  
S96 C18 N19 SING N N 9  
S96 C20 N19 SING Y N 10 
S96 C20 N21 DOUB Y N 11 
S96 C22 C23 DOUB Y N 12 
S96 C22 C32 SING Y N 13 
S96 C22 N21 SING Y N 14 
S96 C23 C24 SING N N 15 
S96 C23 C29 SING Y N 16 
S96 C24 C28 DOUB Y N 17 
S96 C24 S25 SING Y N 18 
S96 C26 C27 DOUB Y N 19 
S96 C26 S25 SING Y N 20 
S96 C27 C28 SING Y N 21 
S96 C29 C30 DOUB Y N 22 
S96 C30 N31 SING Y N 23 
S96 C32 N19 SING Y N 24 
S96 C32 N31 DOUB Y N 25 
S96 O02 P01 DOUB N N 26 
S96 O03 P01 SING N N 27 
S96 O04 P01 SING N N 28 
S96 O04 P05 SING N N 29 
S96 O06 P05 DOUB N N 30 
S96 O07 P05 SING N N 31 
S96 O08 P05 SING N N 32 
S96 O08 P09 SING N N 33 
S96 O10 P09 DOUB N N 34 
S96 O11 P09 SING N N 35 
S96 O12 P09 SING N N 36 
S96 O13 P01 SING N N 37 
S96 C14 H1  SING N N 38 
S96 C14 H2  SING N N 39 
S96 C15 H3  SING N N 40 
S96 C16 H4  SING N N 41 
S96 C17 H5  SING N N 42 
S96 C18 H6  SING N N 43 
S96 C20 H8  SING N N 44 
S96 C26 H9  SING N N 45 
S96 C27 H10 SING N N 46 
S96 C28 H11 SING N N 47 
S96 C29 H12 SING N N 48 
S96 C30 H13 SING N N 49 
S96 O03 H14 SING N N 50 
S96 O07 H15 SING N N 51 
S96 O11 H16 SING N N 52 
S96 O12 H17 SING N N 53 
S96 O34 H19 SING N N 54 
S96 O35 H20 SING N N 55 
S96 C18 O33 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S96 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(C(O)C1O)n1cnc2c(ccnc21)c1cccs1"                                                                                                                                                        
S96 InChI            InChI                1.06  "InChI=1S/C15H18N3O13P3S/c19-12-9(6-28-33(24,25)31-34(26,27)30-32(21,22)23)29-15(13(12)20)18-7-17-11-8(3-4-16-14(11)18)10-2-1-5-35-10/h1-5,7,9,12-13,15,19-20H,6H2,(H,24,25)(H,26,27)(H2,21,22,23)/t9-,12-,13-,15-/m1/s1" 
S96 InChIKey         InChI                1.06  SAOUNFXHOUBCDP-QGMIFYJMSA-N                                                                                                                                                                                               
S96 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]([C@@H]1O)n2cnc3c(ccnc23)c4sccc4"                                                                                                                               
S96 SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]([CH]1O)n2cnc3c(ccnc23)c4sccc4"                                                                                                                                      
S96 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)c2ccnc3c2ncn3C4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                        
S96 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)c2ccnc3c2ncn3C4C(C(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S96 "SYSTEMATIC NAME" ACDLabs              12.01 "(7P)-3-{5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-7-(thiophen-2-yl)-3H-imidazo[4,5-b]pyridine"            
S96 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R})-3,4-bis(oxidanyl)-5-(7-thiophen-2-ylimidazo[4,5-b]pyridin-3-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S96 "Create component" 2022-06-27 RCSB 
S96 "Initial release"  2023-02-01 RCSB 
# 
