data_0R7
# 
_chem_comp.id                                    0R7 
_chem_comp.name                                  "[[(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N3 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-27 
_chem_comp.pdbx_modified_date                    2013-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        575.296 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0R7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ELV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0R7 "O5'" "O5'" O 0 1 N N N 19.548 -18.219 -10.456 -1.242 1.780  -1.268 "O5'" 0R7 1  
0R7 P1    P1    P 0 1 N N N 18.905 -16.860 -10.981 -2.109 0.437  -1.455 P1    0R7 2  
0R7 O1    O1    O 0 1 N N N 17.330 -17.145 -10.899 -3.360 0.460  -0.443 O1    0R7 3  
0R7 P2    P2    P 0 1 N N N 16.367 -16.695 -12.111 -4.332 -0.674 0.160  P2    0R7 4  
0R7 O3    O3    O 0 1 N N N 16.521 -15.099 -12.170 -5.689 0.011  0.692  O3    0R7 5  
0R7 P3    P3    P 0 1 N N N 16.649 -14.298 -13.559 -7.139 -0.554 1.104  P3    0R7 6  
0R7 O5    O5    O 0 1 N N N 17.089 -12.807 -13.192 -7.076 -1.157 2.596  O5    0R7 7  
0R7 O6    O6    O 0 1 N N N 15.227 -14.254 -14.286 -8.215 0.642  1.054  O6    0R7 8  
0R7 O7    O7    O 0 1 N N N 17.718 -14.890 -14.430 -7.541 -1.619 0.159  O7    0R7 9  
0R7 O8    O8    O 0 1 N N N 14.994 -17.061 -11.686 -3.594 -1.421 1.380  O8    0R7 10 
0R7 O9    O9    O 0 1 N N N 16.743 -17.454 -13.476 -4.657 -1.658 -0.897 O9    0R7 11 
0R7 O10   O10   O 0 1 N N N 19.336 -15.609 -10.082 -2.646 0.352  -2.971 O10   0R7 12 
0R7 O11   O11   O 0 1 N N N 19.421 -16.654 -12.366 -1.262 -0.742 -1.166 O11   0R7 13 
0R7 "C1'" "C1'" C 0 1 N N R 18.972 -21.190 -8.090  2.164  4.150  -0.023 "C1'" 0R7 14 
0R7 N1    N1    N 0 1 N N N 19.074 -20.264 -6.961  3.257  3.325  0.499  N1    0R7 15 
0R7 C6    C6    C 0 1 N N N 19.476 -18.984 -7.140  3.253  1.985  0.266  C6    0R7 16 
0R7 C5    C5    C 0 1 N N N 19.510 -18.145 -6.099  4.289  1.218  0.763  C5    0R7 17 
0R7 C1    C1    C 0 1 N N N 19.908 -16.775 -6.217  4.330  -0.196 0.545  C1    0R7 18 
0R7 C3    C3    C 0 1 N N N 20.222 -15.619 -6.186  4.364  -1.356 0.366  C3    0R7 19 
0R7 N2    N2    N 0 1 N N N 18.757 -19.789 -4.615  5.265  3.208  1.698  N2    0R7 20 
0R7 C4    C4    C 0 1 N N N 19.130 -18.586 -4.753  5.346  1.897  1.522  C4    0R7 21 
0R7 C2    C2    C 0 1 N N N 18.710 -20.691 -5.730  4.248  3.905  1.194  C2    0R7 22 
0R7 O2    O2    O 0 1 N N N 18.303 -21.827 -5.507  4.214  5.111  1.374  O2    0R7 23 
0R7 N3    N3    N 0 1 N N N 19.198 -17.722 -3.751  6.401  1.186  2.040  N3    0R7 24 
0R7 "O4'" "O4'" O 0 1 N N N 19.792 -20.789 -9.197  0.984  3.353  -0.176 "O4'" 0R7 25 
0R7 "C4'" "C4'" C 0 1 N N S 19.039 -20.628 -10.420 0.550  3.378  -1.545 "C4'" 0R7 26 
0R7 "C3'" "C3'" C 0 1 N N N 17.596 -20.388 -9.918  1.823  3.704  -2.367 "C3'" 0R7 27 
0R7 "C2'" "C2'" C 0 1 N N N 17.535 -21.285 -8.667  2.542  4.701  -1.415 "C2'" 0R7 28 
0R7 "C5'" "C5'" C 0 1 N N N 19.579 -19.427 -11.231 -0.008 2.012  -1.950 "C5'" 0R7 29 
0R7 C01   C01   C 0 1 Y N N 20.585 -14.236 -6.070  4.405  -2.771 0.147  C01   0R7 30 
0R7 C02   C02   C 0 1 Y N N 21.748 -13.750 -6.676  3.390  -3.396 -0.585 C02   0R7 31 
0R7 C03   C03   C 0 1 Y N N 22.073 -12.395 -6.555  3.430  -4.745 -0.793 C03   0R7 32 
0R7 C04   C04   C 0 1 Y N N 21.235 -11.541 -5.832  4.486  -5.501 -0.276 C04   0R7 33 
0R7 C05   C05   C 0 1 Y N N 20.076 -12.036 -5.226  5.500  -4.878 0.455  C05   0R7 34 
0R7 C     C     C 0 1 Y N N 19.746 -13.386 -5.347  5.465  -3.527 0.660  C     0R7 35 
0R7 C7    C7    C 0 1 N N N 21.566 -10.143 -5.705  4.527  -6.916 -0.495 C7    0R7 36 
0R7 C8    C8    C 0 1 N N N 21.853 -8.980  -5.600  4.562  -8.075 -0.675 C8    0R7 37 
0R7 H1    H1    H 0 1 N N N 17.925 -12.614 -13.599 -6.818 -0.513 3.270  H1    0R7 38 
0R7 H2    H2    H 0 1 N N N 15.306 -14.617 -15.160 -9.113 0.374  1.291  H2    0R7 39 
0R7 H3    H3    H 0 1 N N N 14.620 -17.671 -12.311 -3.351 -0.835 2.111  H3    0R7 40 
0R7 H4    H4    H 0 1 N N N 19.830 -14.994 -10.611 -3.210 1.094  -3.230 H4    0R7 41 
0R7 H5    H5    H 0 1 N N N 19.271 -22.195 -7.758  1.967  4.976  0.660  H5    0R7 42 
0R7 H6    H6    H 0 1 N N N 19.769 -18.641 -8.121  2.453  1.529  -0.298 H6    0R7 43 
0R7 H7    H7    H 0 1 N N N 18.947 -18.008 -2.826  6.451  0.227  1.907  H7    0R7 44 
0R7 H8    H8    H 0 1 N N N 19.500 -16.784 -3.919  7.095  1.644  2.540  H8    0R7 45 
0R7 H9    H9    H 0 1 N N N 19.074 -21.540 -11.034 -0.203 4.153  -1.690 H9    0R7 46 
0R7 H10   H10   H 0 1 N N N 17.434 -19.331 -9.660  2.425  2.810  -2.529 H10   0R7 47 
0R7 H11   H11   H 0 1 N N N 16.855 -20.700 -10.669 1.567  4.180  -3.314 H11   0R7 48 
0R7 H12   H12   H 0 1 N N N 16.795 -20.907 -7.946  2.159  5.712  -1.550 H12   0R7 49 
0R7 H13   H13   H 0 1 N N N 17.287 -22.322 -8.937  3.622  4.670  -1.565 H13   0R7 50 
0R7 H14   H14   H 0 1 N N N 18.958 -19.293 -12.129 0.707  1.234  -1.682 H14   0R7 51 
0R7 H15   H15   H 0 1 N N N 20.617 -19.634 -11.530 -0.179 1.993  -3.026 H15   0R7 52 
0R7 H16   H16   H 0 1 N N N 22.390 -14.416 -7.233  2.574  -2.812 -0.984 H16   0R7 53 
0R7 H17   H17   H 0 1 N N N 22.969 -12.010 -7.019  2.646  -5.228 -1.358 H17   0R7 54 
0R7 H18   H18   H 0 1 N N N 19.436 -11.372 -4.664  6.315  -5.463 0.855  H18   0R7 55 
0R7 H19   H19   H 0 1 N N N 18.849 -13.771 -4.885  6.251  -3.045 1.221  H19   0R7 56 
0R7 H20   H20   H 0 1 N N N 22.106 -7.955  -5.507  4.592  -9.113 -0.835 H20   0R7 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0R7 O7    P3    DOUB N N 1  
0R7 O6    P3    SING N N 2  
0R7 P3    O5    SING N N 3  
0R7 P3    O3    SING N N 4  
0R7 O9    P2    DOUB N N 5  
0R7 O11   P1    DOUB N N 6  
0R7 O3    P2    SING N N 7  
0R7 P2    O8    SING N N 8  
0R7 P2    O1    SING N N 9  
0R7 "C5'" "O5'" SING N N 10 
0R7 "C5'" "C4'" SING N N 11 
0R7 P1    O1    SING N N 12 
0R7 P1    "O5'" SING N N 13 
0R7 P1    O10   SING N N 14 
0R7 "C4'" "C3'" SING N N 15 
0R7 "C4'" "O4'" SING N N 16 
0R7 "C3'" "C2'" SING N N 17 
0R7 "O4'" "C1'" SING N N 18 
0R7 "C2'" "C1'" SING N N 19 
0R7 "C1'" N1    SING N N 20 
0R7 C6    N1    SING N N 21 
0R7 C6    C5    DOUB N N 22 
0R7 N1    C2    SING N N 23 
0R7 C02   C03   DOUB Y N 24 
0R7 C02   C01   SING Y N 25 
0R7 C03   C04   SING Y N 26 
0R7 C1    C3    TRIP N N 27 
0R7 C1    C5    SING N N 28 
0R7 C3    C01   SING N N 29 
0R7 C5    C4    SING N N 30 
0R7 C01   C     DOUB Y N 31 
0R7 C04   C7    SING N N 32 
0R7 C04   C05   DOUB Y N 33 
0R7 C2    O2    DOUB N N 34 
0R7 C2    N2    SING N N 35 
0R7 C7    C8    TRIP N N 36 
0R7 C     C05   SING Y N 37 
0R7 C4    N2    DOUB N N 38 
0R7 C4    N3    SING N N 39 
0R7 O5    H1    SING N N 40 
0R7 O6    H2    SING N N 41 
0R7 O8    H3    SING N N 42 
0R7 O10   H4    SING N N 43 
0R7 "C1'" H5    SING N N 44 
0R7 C6    H6    SING N N 45 
0R7 N3    H7    SING N N 46 
0R7 N3    H8    SING N N 47 
0R7 "C4'" H9    SING N N 48 
0R7 "C3'" H10   SING N N 49 
0R7 "C3'" H11   SING N N 50 
0R7 "C2'" H12   SING N N 51 
0R7 "C2'" H13   SING N N 52 
0R7 "C5'" H14   SING N N 53 
0R7 "C5'" H15   SING N N 54 
0R7 C02   H16   SING N N 55 
0R7 C03   H17   SING N N 56 
0R7 C05   H18   SING N N 57 
0R7 C     H19   SING N N 58 
0R7 C8    H20   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0R7 InChI            InChI                1.03  
"InChI=1S/C19H20N3O12P3/c1-2-13-3-5-14(6-4-13)7-8-15-11-22(19(23)21-18(15)20)17-10-9-16(32-17)12-31-36(27,28)34-37(29,30)33-35(24,25)26/h1,3-6,11,16-17H,9-10,12H2,(H,27,28)(H,29,30)(H2,20,21,23)(H2,24,25,26)/t16-,17+/m0/s1" 
0R7 InChIKey         InChI                1.03  PROFTMDIPXHDEG-DLBZAZTESA-N 
0R7 SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3CC[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0R7 SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0R7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3CC[C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" 
0R7 SMILES           "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0R7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0R7 "Create component" 2012-04-27 RCSB 
0R7 "Initial release"  2013-04-24 RCSB 
# 
