data_5S7
#

_chem_comp.id                                   5S7
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{S})-2-[2,6-bis(azanyl)purin-9-yl]-5-(methylsulfanylmethyl)oxolane-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-amino-5'-deoxy-5'-(methylthio)adenosine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-11-19
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       312.348
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5S7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EUB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5S7  C2     C1   C  0  1  Y  N  N  -14.677  -63.705   -4.326  -3.994   0.859  -0.571  C2     5S7   1  
5S7  C4     C2   C  0  1  Y  N  N  -16.229  -62.003   -4.528  -1.966  -0.153  -0.160  C4     5S7   2  
5S7  C5     C3   C  0  1  Y  N  N  -16.827  -62.411   -3.276  -2.641  -1.323   0.226  C5     5S7   3  
5S7  C6     C4   C  0  1  Y  N  N  -16.240  -63.555   -2.591  -4.046  -1.325   0.185  C6     5S7   4  
5S7  C8     C5   C  0  1  Y  N  N  -17.899  -60.715   -4.043  -0.516  -1.710   0.423  C8     5S7   5  
5S7  "O3'"  O1   O  0  1  N  N  N  -16.179  -58.699   -8.430   2.344   3.067   0.072  "O3'"  5S7   6  
5S7  "C3'"  C6   C  0  1  N  N  S  -16.319  -60.139   -8.417   2.249   1.781   0.688  "C3'"  5S7   7  
5S7  "C4'"  C7   C  0  1  N  N  S  -17.771  -60.590   -8.319   2.784   0.689  -0.258  "C4'"  5S7   8  
5S7  "C5'"  C8   C  0  1  N  N  N  -18.162  -61.827   -9.138   3.963  -0.034   0.395  "C5'"  5S7   9  
5S7  "S5'"  S1   S  0  1  N  N  N  -19.903  -62.178   -8.982   4.677  -1.214  -0.783  "S5'"  5S7  10  
5S7  CS     C9   C  0  1  N  N  N  -20.689  -60.852   -9.824   6.037  -1.959   0.159  CS     5S7  11  
5S7  "C2'"  C10  C  0  1  N  N  R  -15.731  -60.539   -7.104   0.766   1.396   0.912  "C2'"  5S7  12  
5S7  "O2'"  O2   O  0  1  N  N  N  -14.617  -59.754   -6.799  -0.069   2.556   0.898  "O2'"  5S7  13  
5S7  "C1'"  C11  C  0  1  N  N  R  -16.862  -60.244   -6.168   0.477   0.491  -0.312  "C1'"  5S7  14  
5S7  "O4'"  O3   O  0  1  N  N  N  -17.929  -60.864   -6.927   1.710  -0.238  -0.491  "O4'"  5S7  15  
5S7  N9     N1   N  0  1  Y  N  N  -16.933  -60.958   -4.909  -0.628  -0.427  -0.026  N9     5S7  16  
5S7  N7     N2   N  0  1  Y  N  N  -17.845  -61.566   -3.022  -1.698  -2.234   0.570  N7     5S7  17  
5S7  N3     N3   N  0  1  Y  N  N  -15.174  -62.660   -5.014  -2.672   0.905  -0.547  N3     5S7  18  
5S7  N1     N4   N  0  1  Y  N  N  -15.177  -64.142   -3.157  -4.672  -0.224  -0.215  N1     5S7  19  
5S7  N6     N5   N  0  1  N  N  N  -16.738  -63.963   -1.425  -4.762  -2.450   0.555  N6     5S7  20  
5S7  N2     N6   N  0  1  N  N  N  -13.632  -64.349   -4.834  -4.694   1.984  -0.975  N2     5S7  21  
5S7  H1     H1   H  0  1  N  N  N  -18.634  -59.931   -4.149   0.416  -2.217   0.625  H1     5S7  22  
5S7  H2     H2   H  0  1  N  N  N  -15.259  -58.470   -8.492   2.021   3.793   0.624  H2     5S7  23  
5S7  H3     H3   H  0  1  N  N  N  -15.804  -60.622   -9.261   2.795   1.770   1.631  H3     5S7  24  
5S7  H4     H4   H  0  1  N  N  N  -18.421  -59.754   -8.615   3.097   1.137  -1.202  H4     5S7  25  
5S7  H5     H5   H  0  1  N  N  N  -17.587  -62.693   -8.777   4.721   0.695   0.684  H5     5S7  26  
5S7  H6     H6   H  0  1  N  N  N  -17.926  -61.646  -10.197   3.617  -0.568   1.280  H6     5S7  27  
5S7  H7     H7   H  0  1  N  N  N  -21.780  -60.984   -9.780   5.639  -2.445   1.049  H7     5S7  28  
5S7  H8     H8   H  0  1  N  N  N  -20.416  -59.900   -9.345   6.547  -2.697  -0.461  H8     5S7  29  
5S7  H9     H9   H  0  1  N  N  N  -20.363  -60.840  -10.875   6.743  -1.182   0.453  H9     5S7  30  
5S7  H10    H10  H  0  1  N  N  N  -15.495  -61.613   -7.097   0.645   0.843   1.843  H10    5S7  31  
5S7  H11    H11  H  0  1  N  N  N  -14.259  -60.024   -5.962   0.135   3.196   1.593  H11    5S7  32  
5S7  H12    H12  H  0  1  N  N  N  -17.012  -59.161   -6.044   0.255   1.095  -1.192  H12    5S7  33  
5S7  H13    H13  H  0  1  N  N  N  -16.201  -64.735   -1.084  -4.294  -3.249   0.845  H13    5S7  34  
5S7  H14    H14  H  0  1  N  N  N  -16.699  -63.213   -0.765  -5.732  -2.441   0.522  H14    5S7  35  
5S7  H15    H15  H  0  1  N  N  N  -13.368  -63.925   -5.700  -5.664   1.970  -0.995  H15    5S7  36  
5S7  H16    H16  H  0  1  N  N  N  -12.867  -64.301   -4.192  -4.215   2.785  -1.239  H16    5S7  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5S7  CS     "S5'"  SING  N  N   1  
5S7  "C5'"  "S5'"  SING  N  N   2  
5S7  "C5'"  "C4'"  SING  N  N   3  
5S7  "O3'"  "C3'"  SING  N  N   4  
5S7  "C3'"  "C4'"  SING  N  N   5  
5S7  "C3'"  "C2'"  SING  N  N   6  
5S7  "C4'"  "O4'"  SING  N  N   7  
5S7  "C2'"  "O2'"  SING  N  N   8  
5S7  "C2'"  "C1'"  SING  N  N   9  
5S7  "O4'"  "C1'"  SING  N  N  10  
5S7  "C1'"  N9     SING  N  N  11  
5S7  N3     C4     DOUB  Y  N  12  
5S7  N3     C2     SING  Y  N  13  
5S7  N9     C4     SING  Y  N  14  
5S7  N9     C8     SING  Y  N  15  
5S7  N2     C2     SING  N  N  16  
5S7  C4     C5     SING  Y  N  17  
5S7  C2     N1     DOUB  Y  N  18  
5S7  C8     N7     DOUB  Y  N  19  
5S7  C5     N7     SING  Y  N  20  
5S7  C5     C6     DOUB  Y  N  21  
5S7  N1     C6     SING  Y  N  22  
5S7  C6     N6     SING  N  N  23  
5S7  C8     H1     SING  N  N  24  
5S7  "O3'"  H2     SING  N  N  25  
5S7  "C3'"  H3     SING  N  N  26  
5S7  "C4'"  H4     SING  N  N  27  
5S7  "C5'"  H5     SING  N  N  28  
5S7  "C5'"  H6     SING  N  N  29  
5S7  CS     H7     SING  N  N  30  
5S7  CS     H8     SING  N  N  31  
5S7  CS     H9     SING  N  N  32  
5S7  "C2'"  H10    SING  N  N  33  
5S7  "O2'"  H11    SING  N  N  34  
5S7  "C1'"  H12    SING  N  N  35  
5S7  N6     H13    SING  N  N  36  
5S7  N6     H14    SING  N  N  37  
5S7  N2     H15    SING  N  N  38  
5S7  N2     H16    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5S7  InChI             InChI                 1.03   "InChI=1S/C11H16N6O3S/c1-21-2-4-6(18)7(19)10(20-4)17-3-14-5-8(12)15-11(13)16-9(5)17/h3-4,6-7,10,18-19H,2H2,1H3,(H4,12,13,15,16)/t4-,6-,7-,10-/m1/s1"  
5S7  InChIKey          InChI                 1.03   POSHIZZVLUQFIQ-KQYNXXCUSA-N  
5S7  SMILES_CANONICAL  CACTVS                3.385  "CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)nc(N)nc23"  
5S7  SMILES            CACTVS                3.385  "CSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)nc(N)nc23"  
5S7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2nc(nc3N)N)O)O"  
5S7  SMILES            "OpenEye OEToolkits"  2.0.4  "CSCC1C(C(C(O1)n2cnc3c2nc(nc3N)N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          5S7
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{S})-2-[2,6-bis(azanyl)purin-9-yl]-5-(methylsulfanylmethyl)oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5S7  "Create component"  2015-11-19  RCSB  
5S7  "Initial release"   2016-12-21  RCSB  
5S7  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5S7
_pdbx_chem_comp_synonyms.name        "2-amino-5'-deoxy-5'-(methylthio)adenosine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
