data_6D7
#

_chem_comp.id                                   6D7
_chem_comp.name                                 "(R)-orteronel"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H17 N3 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-[(7R)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-03-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       307.346
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6D7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5IRQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6D7  C11   C1   C  0  1  N  N  R  -24.324  -37.127  57.995   2.891   0.902  -0.198  C11   6D7   1  
6D7  C13   C2   C  0  1  N  N  N  -22.887  -37.098  58.139   3.303   0.770  -1.682  C13   6D7   2  
6D7  C14   C3   C  0  1  N  N  N  -22.337  -37.258  56.751   4.559  -0.123  -1.589  C14   6D7   3  
6D7  C21   C4   C  0  1  Y  N  N  -24.586  -33.303  56.898  -0.593   2.132   0.532  C21   6D7   4  
6D7  C22   C5   C  0  1  Y  N  N  -25.068  -32.685  58.257  -1.371   1.010   0.194  C22   6D7   5  
6D7  C23   C6   C  0  1  Y  N  N  -25.320  -31.169  58.361  -2.768   1.033   0.312  C23   6D7   6  
6D7  C10   C7   C  0  1  Y  N  N  -24.572  -35.693  58.000   1.390   0.927  -0.068  C10   6D7   7  
6D7  C16   C8   C  0  1  Y  N  N  -23.627  -38.521  54.741   4.865  -2.002   0.285  C16   6D7   8  
6D7  C18   C9   C  0  1  Y  N  N  -25.549  -38.431  55.862   3.379  -1.102   1.564  C18   6D7   9  
6D7  C19   C10  C  0  1  Y  N  N  -24.546  -37.799  56.638   3.458  -0.337   0.458  C19   6D7  10  
6D7  C20   C11  C  0  1  Y  N  N  -24.336  -34.803  56.790   0.760   2.079   0.399  C20   6D7  11  
6D7  C01   C12  C  0  1  N  N  N  -26.816  -27.089  61.025  -7.149  -1.148  -0.120  C01   6D7  12  
6D7  N02   N1   N  0  1  N  N  N  -26.579  -28.527  60.960  -5.689  -1.166  -0.242  N02   6D7  13  
6D7  C03   C13  C  0  1  N  N  N  -26.025  -29.091  59.751  -4.972  -0.074   0.091  C03   6D7  14  
6D7  O04   O1   O  0  1  N  N  N  -25.763  -28.386  58.821  -5.537   0.925   0.493  O04   6D7  15  
6D7  C05   C14  C  0  1  Y  N  N  -25.781  -30.575  59.670  -3.500  -0.091  -0.032  C05   6D7  16  
6D7  C06   C15  C  0  1  Y  N  N  -26.009  -31.468  60.906  -2.852  -1.250  -0.497  C06   6D7  17  
6D7  C07   C16  C  0  1  Y  N  N  -25.760  -32.966  60.802  -1.500  -1.290  -0.618  C07   6D7  18  
6D7  C08   C17  C  0  1  Y  N  N  -25.282  -33.565  59.454  -0.729  -0.164  -0.277  C08   6D7  19  
6D7  C09   C18  C  0  1  Y  N  N  -25.031  -35.071  59.343   0.671  -0.182  -0.395  C09   6D7  20  
6D7  O12   O2   O  0  1  N  N  N  -25.136  -37.573  59.110   3.460   2.080   0.376  O12   6D7  21  
6D7  N15   N2   N  0  1  Y  N  N  -23.375  -37.877  55.948   4.401  -0.902  -0.353  N15   6D7  22  
6D7  N17   N3   N  0  1  Y  N  N  -24.979  -38.858  54.705   4.249  -2.114   1.429  N17   6D7  23  
6D7  H132  H1   H  0  0  N  N  N  -22.549  -37.923  58.783   2.520   0.282  -2.261  H132  6D7  24  
6D7  H131  H2   H  0  0  N  N  N  -22.564  -36.140  58.572   3.548   1.744  -2.106  H131  6D7  25  
6D7  H141  H3   H  0  0  N  N  N  -21.443  -37.899  56.771   4.612  -0.789  -2.450  H141  6D7  26  
6D7  H142  H4   H  0  0  N  N  N  -22.074  -36.275  56.334   5.456   0.494  -1.534  H142  6D7  27  
6D7  H211  H5   H  0  0  N  N  N  -24.431  -32.666  56.039  -1.068   3.033   0.891  H211  6D7  28  
6D7  H231  H6   H  0  0  N  N  N  -25.168  -30.534  57.501  -3.269   1.921   0.670  H231  6D7  29  
6D7  H161  H7   H  0  0  N  N  N  -22.902  -38.724  53.967   5.619  -2.677  -0.092  H161  6D7  30  
6D7  H181  H8   H  0  0  N  N  N  -26.585  -38.552  56.141   2.729  -0.931   2.409  H181  6D7  31  
6D7  H201  H9   H  0  0  N  N  N  -23.993  -35.231  55.860   1.355   2.942   0.660  H201  6D7  32  
6D7  H013  H10  H  0  0  N  N  N  -27.237  -26.830  62.008  -7.425  -0.959   0.917  H013  6D7  33  
6D7  H011  H11  H  0  0  N  N  N  -25.866  -26.554  60.881  -7.557  -0.361  -0.755  H011  6D7  34  
6D7  H012  H12  H  0  0  N  N  N  -27.524  -26.798  60.235  -7.551  -2.112  -0.433  H012  6D7  35  
6D7  H021  H13  H  0  0  N  N  N  -26.797  -29.113  61.740  -5.239  -1.963  -0.562  H021  6D7  36  
6D7  H061  H14  H  0  0  N  N  N  -26.342  -31.035  61.837  -3.437  -2.118  -0.761  H061  6D7  37  
6D7  H071  H15  H  0  0  N  N  N  -25.915  -33.605  61.659  -1.017  -2.187  -0.976  H071  6D7  38  
6D7  H091  H16  H  0  0  N  N  N  -25.175  -35.704  60.206   1.173  -1.067  -0.757  H091  6D7  39  
6D7  H121  H17  H  0  0  N  N  N  -24.903  -37.081  59.889   3.257   2.199   1.314  H121  6D7  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6D7  N17  C16   DOUB  Y  N   1  
6D7  N17  C18   SING  Y  N   2  
6D7  C16  N15   SING  Y  N   3  
6D7  C18  C19   DOUB  Y  N   4  
6D7  N15  C19   SING  Y  N   5  
6D7  N15  C14   SING  N  N   6  
6D7  C19  C11   SING  N  N   7  
6D7  C14  C13   SING  N  N   8  
6D7  C20  C21   DOUB  Y  N   9  
6D7  C20  C10   SING  Y  N  10  
6D7  C21  C22   SING  Y  N  11  
6D7  C11  C10   SING  N  N  12  
6D7  C11  C13   SING  N  N  13  
6D7  C11  O12   SING  N  N  14  
6D7  C10  C09   DOUB  Y  N  15  
6D7  C22  C23   DOUB  Y  N  16  
6D7  C22  C08   SING  Y  N  17  
6D7  C23  C05   SING  Y  N  18  
6D7  O04  C03   DOUB  N  N  19  
6D7  C09  C08   SING  Y  N  20  
6D7  C08  C07   DOUB  Y  N  21  
6D7  C05  C03   SING  N  N  22  
6D7  C05  C06   DOUB  Y  N  23  
6D7  C03  N02   SING  N  N  24  
6D7  C07  C06   SING  Y  N  25  
6D7  N02  C01   SING  N  N  26  
6D7  C13  H132  SING  N  N  27  
6D7  C13  H131  SING  N  N  28  
6D7  C14  H141  SING  N  N  29  
6D7  C14  H142  SING  N  N  30  
6D7  C21  H211  SING  N  N  31  
6D7  C23  H231  SING  N  N  32  
6D7  C16  H161  SING  N  N  33  
6D7  C18  H181  SING  N  N  34  
6D7  C20  H201  SING  N  N  35  
6D7  C01  H013  SING  N  N  36  
6D7  C01  H011  SING  N  N  37  
6D7  C01  H012  SING  N  N  38  
6D7  N02  H021  SING  N  N  39  
6D7  C06  H061  SING  N  N  40  
6D7  C07  H071  SING  N  N  41  
6D7  C09  H091  SING  N  N  42  
6D7  O12  H121  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6D7  SMILES            ACDLabs               12.01  "C3(c1cc2c(cc1)cc(C(NC)=O)cc2)(CCn4cncc34)O"  
6D7  InChI             InChI                 1.03   "InChI=1S/C18H17N3O2/c1-19-17(22)14-3-2-13-9-15(5-4-12(13)8-14)18(23)6-7-21-11-20-10-16(18)21/h2-5,8-11,23H,6-7H2,1H3,(H,19,22)/t18-/m1/s1"  
6D7  InChIKey          InChI                 1.03   OZPFIJIOIVJZMN-GOSISDBHSA-N  
6D7  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)c1ccc2cc(ccc2c1)[C@]3(O)CCn4cncc34"  
6D7  SMILES            CACTVS                3.385  "CNC(=O)c1ccc2cc(ccc2c1)[C]3(O)CCn4cncc34"  
6D7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "CNC(=O)c1ccc2cc(ccc2c1)[C@@]3(CCn4c3cnc4)O"  
6D7  SMILES            "OpenEye OEToolkits"  2.0.4  "CNC(=O)c1ccc2cc(ccc2c1)C3(CCn4c3cnc4)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6D7  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-[(7R)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"  
6D7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "~{N}-methyl-6-[(7~{R})-7-oxidanyl-5,6-dihydropyrrolo[1,2-c]imidazol-7-yl]naphthalene-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6D7  "Create component"  2016-03-16  RCSB  
6D7  "Initial release"   2017-03-15  RCSB  
6D7  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6D7
_pdbx_chem_comp_synonyms.name        "6-[(7R)-7-hydroxy-6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-7-yl]-N-methylnaphthalene-2-carboxamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
