data_DD7
#

_chem_comp.id                                   DD7
_chem_comp.name                                 "(1S,2S,3S,4R,5R)-2-(benzylamino)-4-(phenylsulfanyl)-6,8-dioxabicyclo[3.2.1]octan-3-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H21 N O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-23
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       343.440
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DD7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5QBS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DD7  C4   C1   C  0  1  Y  N  N  -5.059  -0.727   7.128  -3.579  -0.262  -1.267  C4   DD7   1  
DD7  C5   C2   C  0  1  Y  N  N  -5.990  -1.752   7.150  -4.779   0.232  -0.789  C5   DD7   2  
DD7  C6   C3   C  0  1  N  N  N  -4.292   1.549   6.388  -1.599  -1.782  -1.084  C6   DD7   3  
DD7  C7   C4   C  0  1  N  N  S  -3.370   3.573   7.559   0.803  -1.479  -1.032  C7   DD7   4  
DD7  C8   C5   C  0  1  N  N  S  -3.249   4.130   8.999   1.255  -2.671  -0.173  C8   DD7   5  
DD7  C9   C6   C  0  1  N  N  N  -1.842   4.614   9.331   2.756  -2.913  -0.457  C9   DD7   6  
DD7  C10  C7   C  0  1  N  N  R  -3.124   6.303   8.503   2.450  -1.405   1.269  C10  DD7   7  
DD7  C11  C8   C  0  1  N  N  R  -3.029   6.039   6.971   2.137  -0.081   0.554  C11  DD7   8  
DD7  C12  C9   C  0  1  N  N  S  -3.755   4.749   6.572   1.858  -0.372  -0.924  C12  DD7   9  
DD7  C13  C10  C  0  1  Y  N  N  -2.872   8.845   6.761   0.653   2.292   0.581  C13  DD7  10  
DD7  C14  C11  C  0  1  Y  N  N  -3.625   9.981   7.025  -0.411   3.151   0.825  C14  DD7  11  
DD7  C15  C12  C  0  1  Y  N  N  -3.048  11.061   7.670  -0.431   4.405   0.246  C15  DD7  12  
DD7  O2   O1   O  0  1  N  N  N  -3.324   4.316   5.286   3.063  -0.798  -1.562  O2   DD7  13  
DD7  N    N1   N  0  1  N  N  N  -4.435   2.522   7.518  -0.491  -0.982  -0.545  N    DD7  14  
DD7  C3   C13  C  0  1  Y  N  N  -5.312   0.446   6.432  -2.907  -1.244  -0.564  C3   DD7  15  
DD7  C2   C14  C  0  1  Y  N  N  -6.521   0.570   5.760  -3.434  -1.732   0.617  C2   DD7  16  
DD7  C1   C15  C  0  1  Y  N  N  -7.450  -0.455   5.783  -4.634  -1.238   1.095  C1   DD7  17  
DD7  C    C16  C  0  1  Y  N  N  -7.186  -1.616   6.478  -5.303  -0.252   0.395  C    DD7  18  
DD7  O    O2   O  0  1  N  N  N  -1.856   6.021   9.055   3.452  -2.102   0.507  O    DD7  19  
DD7  O1   O3   O  0  1  N  N  N  -4.005   5.360   9.075   1.263  -2.225   1.206  O1   DD7  20  
DD7  S    S1   S  0  1  N  N  N  -3.651   7.448   5.993   0.679   0.689   1.311  S    DD7  21  
DD7  C18  C17  C  0  1  Y  N  N  -1.535   8.810   7.136   1.694   2.697  -0.246  C18  DD7  22  
DD7  C17  C18  C  0  1  Y  N  N  -0.969   9.895   7.785   1.668   3.952  -0.821  C17  DD7  23  
DD7  C16  C19  C  0  1  Y  N  N  -1.723  11.017   8.052   0.607   4.805  -0.576  C16  DD7  24  
DD7  H1   H1   H  0  1  N  N  N  -4.125  -0.842   7.659  -3.169   0.117  -2.192  H1   DD7  25  
DD7  H2   H2   H  0  1  N  N  N  -5.779  -2.660   7.695  -5.306   0.996  -1.341  H2   DD7  26  
DD7  H3   H3   H  0  1  N  N  N  -3.289   1.101   6.436  -1.591  -1.727  -2.173  H3   DD7  27  
DD7  H4   H4   H  0  1  N  N  N  -4.405   2.094   5.439  -1.483  -2.820  -0.772  H4   DD7  28  
DD7  H5   H5   H  0  1  N  N  N  -2.405   3.147   7.249   0.707  -1.793  -2.072  H5   DD7  29  
DD7  H6   H6   H  0  1  N  N  N  -3.593   3.386   9.732   0.638  -3.556  -0.327  H6   DD7  30  
DD7  H7   H7   H  0  1  N  N  N  -1.611   4.431  10.391   3.003  -3.966  -0.316  H7   DD7  31  
DD7  H8   H8   H  0  1  N  N  N  -1.099   4.104   8.700   3.006  -2.599  -1.470  H8   DD7  32  
DD7  H9   H9   H  0  1  N  N  N  -3.441   7.340   8.690   2.771  -1.248   2.299  H9   DD7  33  
DD7  H10  H10  H  0  1  N  N  N  -1.967   5.941   6.703   2.991   0.591   0.640  H10  DD7  34  
DD7  H11  H11  H  0  1  N  N  N  -4.843   4.907   6.601   1.488   0.532  -1.409  H11  DD7  35  
DD7  H12  H12  H  0  1  N  N  N  -4.662  10.022   6.727  -1.222   2.839   1.467  H12  DD7  36  
DD7  H13  H13  H  0  1  N  N  N  -3.638  11.942   7.875  -1.258   5.073   0.435  H13  DD7  37  
DD7  H14  H14  H  0  1  N  N  N  -3.781   3.517   5.051   3.777  -0.146  -1.530  H14  DD7  38  
DD7  H15  H15  H  0  1  N  N  N  -5.321   2.977   7.431  -0.609  -0.005  -0.766  H15  DD7  39  
DD7  H17  H17  H  0  1  N  N  N  -6.738   1.476   5.214  -2.911  -2.502   1.164  H17  DD7  40  
DD7  H18  H18  H  0  1  N  N  N  -8.385  -0.345   5.255  -5.045  -1.620   2.017  H18  DD7  41  
DD7  H19  H19  H  0  1  N  N  N  -7.912  -2.415   6.496  -6.240   0.133   0.768  H19  DD7  42  
DD7  H20  H20  H  0  1  N  N  N  -0.937   7.937   6.922   2.523   2.032  -0.438  H20  DD7  43  
DD7  H21  H21  H  0  1  N  N  N   0.068   9.861   8.083   2.476   4.268  -1.464  H21  DD7  44  
DD7  H22  H22  H  0  1  N  N  N  -1.278  11.860   8.559   0.588   5.786  -1.028  H22  DD7  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DD7  O2   C12  SING  N  N   1  
DD7  C2   C1   DOUB  Y  N   2  
DD7  C2   C3   SING  Y  N   3  
DD7  C1   C    SING  Y  N   4  
DD7  S    C13  SING  N  N   5  
DD7  S    C11  SING  N  N   6  
DD7  C6   C3   SING  N  N   7  
DD7  C6   N    SING  N  N   8  
DD7  C3   C4   DOUB  Y  N   9  
DD7  C    C5   DOUB  Y  N  10  
DD7  C12  C11  SING  N  N  11  
DD7  C12  C7   SING  N  N  12  
DD7  C13  C14  DOUB  Y  N  13  
DD7  C13  C18  SING  Y  N  14  
DD7  C11  C10  SING  N  N  15  
DD7  C14  C15  SING  Y  N  16  
DD7  C4   C5   SING  Y  N  17  
DD7  C18  C17  DOUB  Y  N  18  
DD7  N    C7   SING  N  N  19  
DD7  C7   C8   SING  N  N  20  
DD7  C15  C16  DOUB  Y  N  21  
DD7  C17  C16  SING  Y  N  22  
DD7  C10  O    SING  N  N  23  
DD7  C10  O1   SING  N  N  24  
DD7  C8   O1   SING  N  N  25  
DD7  C8   C9   SING  N  N  26  
DD7  O    C9   SING  N  N  27  
DD7  C4   H1   SING  N  N  28  
DD7  C5   H2   SING  N  N  29  
DD7  C6   H3   SING  N  N  30  
DD7  C6   H4   SING  N  N  31  
DD7  C7   H5   SING  N  N  32  
DD7  C8   H6   SING  N  N  33  
DD7  C9   H7   SING  N  N  34  
DD7  C9   H8   SING  N  N  35  
DD7  C10  H9   SING  N  N  36  
DD7  C11  H10  SING  N  N  37  
DD7  C12  H11  SING  N  N  38  
DD7  C14  H12  SING  N  N  39  
DD7  C15  H13  SING  N  N  40  
DD7  O2   H14  SING  N  N  41  
DD7  N    H15  SING  N  N  42  
DD7  C2   H17  SING  N  N  43  
DD7  C1   H18  SING  N  N  44  
DD7  C    H19  SING  N  N  45  
DD7  C18  H20  SING  N  N  46  
DD7  C17  H21  SING  N  N  47  
DD7  C16  H22  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DD7  SMILES            ACDLabs               12.01  "c1ccccc1CNC3C2OC(OC2)C(C3O)Sc4ccccc4"  
DD7  InChI             InChI                 1.03   "InChI=1S/C19H21NO3S/c21-17-16(20-11-13-7-3-1-4-8-13)15-12-22-19(23-15)18(17)24-14-9-5-2-6-10-14/h1-10,15-21H,11-12H2/t15-,16-,17+,18-,19-/m1/s1"  
DD7  InChIKey          InChI                 1.03   PZKNEARJFSZCKB-UJWQCDCRSA-N  
DD7  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@H](NCc2ccccc2)[C@H]3CO[C@H](O3)[C@@H]1Sc4ccccc4"  
DD7  SMILES            CACTVS                3.385  "O[CH]1[CH](NCc2ccccc2)[CH]3CO[CH](O3)[CH]1Sc4ccccc4"  
DD7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CN[C@@H]2[C@H]3CO[C@H](O3)[C@@H]([C@H]2O)Sc4ccccc4"  
DD7  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)CNC2C3COC(O3)C(C2O)Sc4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DD7  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S,3S,4R,5R)-2-(benzylamino)-4-(phenylsulfanyl)-6,8-dioxabicyclo[3.2.1]octan-3-ol (non-preferred name)"  
DD7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(1~{S},2~{S},3~{S},4~{R},5~{R})-2-[(phenylmethyl)amino]-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DD7  "Create component"  2017-10-23  RCSB  
DD7  "Initial release"   2020-04-22  RCSB  
##
