data_MF7
# 
_chem_comp.id                                    MF7 
_chem_comp.name                                  "N-{2-amino-5-[formyl(methyl)amino]-6-hydroxypyrimidin-4-yl}-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H18 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-11-26 
_chem_comp.pdbx_modified_date                    2015-07-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        379.263 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MF7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4RU9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MF7 P1    P1    P 0 1 N N N -26.546 59.336 16.985 4.923  -0.976 0.802  P1    MF7 1  
MF7 OP1   OP1   O 0 1 N N N -26.259 60.776 16.659 6.126  -0.153 0.542  OP1   MF7 2  
MF7 "O5'" "O5'" O 0 1 N N N -25.454 58.402 16.239 3.705  -0.449 -0.109 "O5'" MF7 3  
MF7 "C5'" "C5'" C 0 1 N N N -24.062 58.726 16.070 3.257  0.908  -0.100 "C5'" MF7 4  
MF7 "C4'" "C4'" C 0 1 N N R -23.579 58.082 14.770 2.089  1.067  -1.076 "C4'" MF7 5  
MF7 "C3'" "C3'" C 0 1 N N S -24.403 58.582 13.615 1.590  2.534  -1.097 "C3'" MF7 6  
MF7 "O3'" "O3'" O 0 1 N N N -23.489 58.920 12.601 2.345  3.316  -2.025 "O3'" MF7 7  
MF7 "C2'" "C2'" C 0 1 N N N -25.290 57.414 13.253 0.126  2.372  -1.571 "C2'" MF7 8  
MF7 "C1'" "C1'" C 0 1 N N R -24.534 56.192 13.752 -0.214 0.902  -1.253 "C1'" MF7 9  
MF7 "O4'" "O4'" O 0 1 N N N -23.739 56.654 14.838 0.939  0.326  -0.616 "O4'" MF7 10 
MF7 N9    N9    N 0 1 N N N -25.427 55.109 14.163 -1.365 0.841  -0.350 N9    MF7 11 
MF7 C4    C4    C 0 1 Y N N -25.124 53.793 13.932 -2.286 -0.190 -0.469 C4    MF7 12 
MF7 C5    C5    C 0 1 Y N N -25.987 52.685 14.418 -3.389 -0.258 0.387  C5    MF7 13 
MF7 N7    N7    N 0 1 N N N -27.202 52.883 15.100 -3.588 0.714  1.384  N7    MF7 14 
MF7 C8    C8    C 0 1 N N N -27.248 53.348 16.272 -4.306 1.821  1.112  C8    MF7 15 
MF7 N3    N3    N 0 1 Y N N -24.000 53.445 13.253 -2.136 -1.125 -1.403 N3    MF7 16 
MF7 C2    C2    C 0 1 Y N N -23.643 52.162 13.018 -3.011 -2.112 -1.522 C2    MF7 17 
MF7 N2    N2    N 0 1 N N N -22.497 51.893 12.351 -2.819 -3.067 -2.507 N2    MF7 18 
MF7 N1    N1    N 0 1 Y N N -24.368 51.143 13.438 -4.064 -2.212 -0.725 N1    MF7 19 
MF7 C6    C6    C 0 1 Y N N -25.511 51.310 14.107 -4.285 -1.312 0.228  C6    MF7 20 
MF7 O6    O6    O 0 1 N N N -26.159 50.297 14.458 -5.367 -1.423 1.039  O6    MF7 21 
MF7 OP2   OP2   O 0 1 N N N -27.929 58.752 16.809 5.237  -2.513 0.441  OP2   MF7 22 
MF7 C3    C3    C 0 1 N N N -28.444 52.515 14.416 -3.015 0.522  2.719  C3    MF7 23 
MF7 O4    O4    O 0 1 N N N -28.308 53.433 16.880 -4.478 2.660  1.972  O4    MF7 24 
MF7 H2    H2    H 0 1 N N N -23.482 58.334 16.918 2.930  1.176  0.905  H2    MF7 25 
MF7 H3    H3    H 0 1 N N N -23.937 59.817 16.014 4.075  1.563  -0.402 H3    MF7 26 
MF7 H4    H4    H 0 1 N N N -22.523 58.343 14.608 2.380  0.743  -2.075 H4    MF7 27 
MF7 H5    H5    H 0 1 N N N -25.013 59.444 13.923 1.630  2.972  -0.099 H5    MF7 28 
MF7 H6    H6    H 0 1 N N N -22.961 59.657 12.883 2.069  4.242  -2.074 H6    MF7 29 
MF7 H7    H7    H 0 1 N N N -26.266 57.498 13.753 -0.531 3.043  -1.018 H7    MF7 30 
MF7 H8    H8    H 0 1 N N N -25.439 57.361 12.164 0.049  2.558  -2.642 H8    MF7 31 
MF7 H9    H9    H 0 1 N N N -23.882 55.833 12.942 -0.437 0.366  -2.176 H9    MF7 32 
MF7 H10   H10   H 0 1 N N N -25.542 55.201 15.152 -1.484 1.522  0.331  H10   MF7 33 
MF7 H12   H12   H 0 1 N N N -26.336 53.677 16.748 -4.728 1.963  0.128  H12   MF7 34 
MF7 H13   H13   H 0 1 N N N -22.043 52.750 12.109 -2.052 -3.007 -3.098 H13   MF7 35 
MF7 H14   H14   H 0 1 N N N -21.893 51.349 12.933 -3.451 -3.796 -2.607 H14   MF7 36 
MF7 H15   H15   H 0 1 N N N -28.517 59.422 16.482 5.962  -2.898 0.953  H15   MF7 37 
MF7 H16   H16   H 0 1 N N N -29.301 52.727 15.072 -2.016 0.957  2.752  H16   MF7 38 
MF7 H17   H17   H 0 1 N N N -28.539 53.099 13.489 -3.648 1.011  3.460  H17   MF7 39 
MF7 H18   H18   H 0 1 N N N -28.425 51.442 14.173 -2.955 -0.544 2.939  H18   MF7 40 
MF7 H11   H11   H 0 1 N N N -25.703 49.514 14.173 -5.206 -1.939 1.841  H11   MF7 41 
MF7 OP3   OP3   O 0 1 N Y N ?       ?      ?      4.520  -0.861 2.356  OP3   MF7 42 
MF7 H20   H20   H 0 1 N Y N ?       ?      ?      3.738  -1.376 2.599  H20   MF7 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MF7 N2    C2    SING N N 1  
MF7 "O3'" "C3'" SING N N 2  
MF7 C2    N3    SING Y N 3  
MF7 C2    N1    DOUB Y N 4  
MF7 "C2'" "C3'" SING N N 5  
MF7 "C2'" "C1'" SING N N 6  
MF7 N3    C4    DOUB Y N 7  
MF7 N1    C6    SING Y N 8  
MF7 "C3'" "C4'" SING N N 9  
MF7 "C1'" N9    SING N N 10 
MF7 "C1'" "O4'" SING N N 11 
MF7 C4    N9    SING N N 12 
MF7 C4    C5    SING Y N 13 
MF7 C6    C5    DOUB Y N 14 
MF7 C6    O6    SING N N 15 
MF7 C3    N7    SING N N 16 
MF7 C5    N7    SING N N 17 
MF7 "C4'" "O4'" SING N N 18 
MF7 "C4'" "C5'" SING N N 19 
MF7 N7    C8    SING N N 20 
MF7 "C5'" "O5'" SING N N 21 
MF7 "O5'" P1    SING N N 22 
MF7 C8    O4    DOUB N N 23 
MF7 OP1   P1    DOUB N N 24 
MF7 OP2   P1    SING N N 25 
MF7 "C5'" H2    SING N N 26 
MF7 "C5'" H3    SING N N 27 
MF7 "C4'" H4    SING N N 28 
MF7 "C3'" H5    SING N N 29 
MF7 "O3'" H6    SING N N 30 
MF7 "C2'" H7    SING N N 31 
MF7 "C2'" H8    SING N N 32 
MF7 "C1'" H9    SING N N 33 
MF7 N9    H10   SING N N 34 
MF7 C8    H12   SING N N 35 
MF7 N2    H13   SING N N 36 
MF7 N2    H14   SING N N 37 
MF7 OP2   H15   SING N N 38 
MF7 C3    H16   SING N N 39 
MF7 C3    H17   SING N N 40 
MF7 C3    H18   SING N N 41 
MF7 O6    H11   SING N N 42 
MF7 P1    OP3   SING N N 43 
MF7 OP3   H20   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MF7 SMILES           ACDLabs              12.01 "O=CN(c1c(nc(nc1O)N)NC2OC(C(O)C2)COP(=O)(O)O)C"                                                                                                                   
MF7 InChI            InChI                1.03  "InChI=1S/C11H18N5O8P/c1-16(4-17)8-9(14-11(12)15-10(8)19)13-7-2-5(18)6(24-7)3-23-25(20,21)22/h4-7,18H,2-3H2,1H3,(H2,20,21,22)(H4,12,13,14,15,19)/t5-,6+,7+/m0/s1" 
MF7 InChIKey         InChI                1.03  XUOKFUXZTMGJBY-RRKCRQDMSA-N                                                                                                                                       
MF7 SMILES_CANONICAL CACTVS               3.385 "CN(C=O)c1c(O)nc(N)nc1N[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                                                    
MF7 SMILES           CACTVS               3.385 "CN(C=O)c1c(O)nc(N)nc1N[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                                        
MF7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN(C=O)c1c(nc(nc1O)N)N[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                                                      
MF7 SMILES           "OpenEye OEToolkits" 1.7.6 "CN(C=O)c1c(nc(nc1O)N)NC2CC(C(O2)COP(=O)(O)O)O"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MF7 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{2-amino-5-[formyl(methyl)amino]-6-hydroxypyrimidin-4-yl}-2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosylamine"                    
MF7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[[2-azanyl-5-[methanoyl(methyl)amino]-6-oxidanyl-pyrimidin-4-yl]amino]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MF7 "Create component"   2014-11-26 RCSB 
MF7 "Other modification" 2014-12-21 RCSB 
MF7 "Initial release"    2015-08-05 RCSB 
# 
