data_RV7
#

_chem_comp.id                                   RV7
_chem_comp.name                                 "4-amino-4,6-dideoxy-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-26
_chem_comp.pdbx_modified_date                   2020-08-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     AGL
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       163.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RV7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QHO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RV7  C1    C1    C  0  1  N  N  S  35.401  76.406  29.425   0.812  -1.424  -0.237  C1    RV7   1  
RV7  C2    C2    C  0  1  N  N  R  33.926  76.121  29.188   1.337  -0.021  -0.554  C2    RV7   2  
RV7  O2    O2    O  0  1  N  N  N  33.145  77.063  29.893   2.700   0.084  -0.138  O2    RV7   3  
RV7  C3    C3    C  0  1  N  N  S  33.521  74.689  29.544   0.492   1.013   0.195  C3    RV7   4  
RV7  O3    O3    O  0  1  N  N  N  32.176  74.499  29.137   0.928   2.329  -0.152  O3    RV7   5  
RV7  C4    C4    C  0  1  N  N  S  34.445  73.676  28.883  -0.978   0.840  -0.201  C4    RV7   6  
RV7  C5    C5    C  0  1  N  N  R  35.874  74.037  29.334  -1.413  -0.596   0.103  C5    RV7   7  
RV7  O5    O5    O  0  1  N  N  N  36.195  75.360  28.908  -0.567  -1.508  -0.601  O5    RV7   8  
RV7  C6    C6    C  0  1  N  N  N  36.969  73.136  28.802  -2.862  -0.795  -0.346  C6    RV7   9  
RV7  N4    N4    N  0  1  N  N  N  34.129  72.310  29.074  -1.807   1.777   0.567  N4    RV7  10  
RV7  H1    H1    H  0  1  N  N  N  35.654  77.347  28.915   1.383  -2.162  -0.801  H1    RV7  11  
RV7  H2    H2    H  0  1  N  N  N  33.740  76.250  28.111   1.268   0.160  -1.627  H2    RV7  12  
RV7  HO2   HO2   H  0  1  N  N  N  32.224  76.885  29.745   3.293  -0.547  -0.569  HO2   RV7  13  
RV7  H3    H3    H  0  1  N  N  N  33.600  74.570  30.635   0.601   0.865   1.269  H3    RV7  14  
RV7  HO3   HO3   H  0  1  N  N  N  31.903  73.614  29.349   1.854   2.507   0.064  HO3   RV7  15  
RV7  H4    H4    H  0  1  N  N  N  34.405  73.879  27.803  -1.094   1.039  -1.266  H4    RV7  16  
RV7  H5    H5    H  0  1  N  N  N  35.900  73.994  30.433  -1.335  -0.781   1.174  H5    RV7  17  
RV7  H61   H61   H  0  1  N  N  N  37.943  73.479  29.181  -2.940  -0.611  -1.417  H61   RV7  18  
RV7  H62   H62   H  0  1  N  N  N  36.788  72.103  29.135  -3.172  -1.818  -0.130  H62   RV7  19  
RV7  H63   H63   H  0  1  N  N  N  36.971  73.171  27.703  -3.507  -0.099   0.190  H63   RV7  20  
RV7  HN41  HN41  H  0  0  N  N  N  34.800  71.742  28.597  -2.782   1.681   0.323  HN41  RV7  21  
RV7  HN42  HN42  H  0  0  N  Y  N  34.147  72.097  30.051  -1.669   1.653   1.559  HN42  RV7  22  
RV7  O1    O1    O  0  1  N  Y  N  35.652  76.524  30.788   0.952  -1.680   1.162  O1    RV7  23  
RV7  HO1   HO1   H  0  1  N  Y  N  35.123  77.226  31.148   0.638  -2.553   1.435  HO1   RV7  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RV7  C1  O5    SING  N  N   1  
RV7  C1  C2    SING  N  N   2  
RV7  C2  C3    SING  N  N   3  
RV7  C2  O2    SING  N  N   4  
RV7  C3  O3    SING  N  N   5  
RV7  C3  C4    SING  N  N   6  
RV7  C4  N4    SING  N  N   7  
RV7  C4  C5    SING  N  N   8  
RV7  C5  O5    SING  N  N   9  
RV7  C5  C6    SING  N  N  10  
RV7  C1  H1    SING  N  N  11  
RV7  C2  H2    SING  N  N  12  
RV7  O2  HO2   SING  N  N  13  
RV7  C3  H3    SING  N  N  14  
RV7  O3  HO3   SING  N  N  15  
RV7  C4  H4    SING  N  N  16  
RV7  C5  H5    SING  N  N  17  
RV7  C6  H61   SING  N  N  18  
RV7  C6  H62   SING  N  N  19  
RV7  C6  H63   SING  N  N  20  
RV7  N4  HN41  SING  N  N  21  
RV7  N4  HN42  SING  N  N  22  
RV7  C1  O1    SING  N  N  23  
RV7  O1  HO1   SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RV7  SMILES            ACDLabs               12.01  "C1(OC(C(C(C1O)O)N)C)O"  
RV7  InChI             InChI                 1.03   "InChI=1S/C6H13NO4/c1-2-3(7)4(8)5(9)6(10)11-2/h2-6,8-10H,7H2,1H3/t2-,3-,4+,5-,6+/m1/s1"  
RV7  InChIKey          InChI                 1.03   RJKBJEZZABBYBA-DVKNGEFBSA-N  
RV7  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1N"  
RV7  SMILES            CACTVS                3.385  "C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1N"  
RV7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N"  
RV7  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RV7  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-amino-4,6-dideoxy-alpha-D-glucopyranose"  
RV7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{S},5~{S},6~{R})-5-azanyl-6-methyl-oxane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RV7  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RV7  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
RV7  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
RV7  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RV7  "Create component"    2020-02-26  RCSB  
RV7  "Initial release"     2020-07-29  RCSB  
RV7  "Obsolete component"  2020-08-11  RCSB  
##
