data_Y77
#

_chem_comp.id                                   Y77
_chem_comp.name                                 "[(~{Z})-5-[(azanylidene-$l^{4}-azanylidene)amino]-3-methyl-pent-2-enyl] dihydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H13 N3 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-09
_chem_comp.pdbx_modified_date                   2021-12-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       222.159
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y77
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7LNW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y77  C01  C1   C  0  1  N  N  N  -8.409  -25.513   -4.314  ?  ?  ?  C01  Y77   1  
Y77  C02  C2   C  0  1  N  N  N  -7.139  -24.849   -4.916  ?  ?  ?  C02  Y77   2  
Y77  C03  C3   C  0  1  N  N  N  -6.312  -25.601   -5.740  ?  ?  ?  C03  Y77   3  
Y77  C04  C4   C  0  1  N  N  N  -6.739  -25.683   -7.109  ?  ?  ?  C04  Y77   4  
Y77  C08  C5   C  0  1  N  N  N  -6.842  -23.500   -4.619  ?  ?  ?  C08  Y77   5  
Y77  C09  C6   C  0  1  N  N  N  -5.591  -22.818   -5.197  ?  ?  ?  C09  Y77   6  
Y77  N05  N1   N  0  1  N  N  N  -5.698  -25.300   -7.913  ?  ?  ?  N05  Y77   7  
Y77  N06  N2   N  0  1  N  N  N  -5.716  -25.516   -9.426  ?  ?  ?  N06  Y77   8  
Y77  N07  N3   N  0  1  N  N  N  -5.716  -25.752  -11.138  ?  ?  ?  N07  Y77   9  
Y77  O10  O1   O  0  1  N  N  N  -5.427  -21.649   -4.639  ?  ?  ?  O10  Y77  10  
Y77  O12  O2   O  0  1  N  N  N  -3.019  -21.416   -3.753  ?  ?  ?  O12  Y77  11  
Y77  O13  O3   O  0  1  N  N  N  -3.992  -19.367   -4.508  ?  ?  ?  O13  Y77  12  
Y77  O14  O4   O  0  1  N  N  N  -3.236  -21.141   -6.091  ?  ?  ?  O14  Y77  13  
Y77  P11  P1   P  0  1  N  N  N  -3.846  -20.884   -4.729  ?  ?  ?  P11  Y77  14  
Y77  H1   H1   H  0  1  N  N  N  -8.945  -24.782   -3.691  ?  ?  ?  H1   Y77  15  
Y77  H2   H2   H  0  1  N  N  N  -9.066  -25.853   -5.128  ?  ?  ?  H2   Y77  16  
Y77  H3   H3   H  0  1  N  N  N  -8.115  -26.375   -3.697  ?  ?  ?  H3   Y77  17  
Y77  H4   H4   H  0  1  N  N  N  -6.263  -26.623   -5.335  ?  ?  ?  H4   Y77  18  
Y77  H5   H5   H  0  1  N  N  N  -5.309  -25.150   -5.721  ?  ?  ?  H5   Y77  19  
Y77  H6   H6   H  0  1  N  N  N  -7.598  -25.015   -7.270  ?  ?  ?  H6   Y77  20  
Y77  H7   H7   H  0  1  N  N  N  -7.030  -26.717   -7.346  ?  ?  ?  H7   Y77  21  
Y77  H8   H8   H  0  1  N  N  N  -7.504  -22.939   -3.976  ?  ?  ?  H8   Y77  22  
Y77  H9   H9   H  0  1  N  N  N  -5.713  -22.690   -6.283  ?  ?  ?  H9   Y77  23  
Y77  H10  H10  H  0  1  N  N  N  -4.709  -23.444   -4.998  ?  ?  ?  H10  Y77  24  
Y77  H11  H11  H  0  1  N  N  N  -4.858  -25.455  -11.557  ?  ?  ?  H11  Y77  25  
Y77  H12  H12  H  0  1  N  N  N  -2.262  -21.818   -4.163  ?  ?  ?  H12  Y77  26  
Y77  H13  H13  H  0  1  N  N  N  -3.669  -18.903   -5.272  ?  ?  ?  H13  Y77  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y77  N07  N06  DOUB  N  N   1  
Y77  N06  N05  DOUB  N  N   2  
Y77  N05  C04  SING  N  N   3  
Y77  C04  C03  SING  N  N   4  
Y77  O14  P11  DOUB  N  N   5  
Y77  C03  C02  SING  N  N   6  
Y77  C09  O10  SING  N  N   7  
Y77  C09  C08  SING  N  N   8  
Y77  C02  C08  DOUB  N  Z   9  
Y77  C02  C01  SING  N  N  10  
Y77  P11  O10  SING  N  N  11  
Y77  P11  O13  SING  N  N  12  
Y77  P11  O12  SING  N  N  13  
Y77  C01  H1   SING  N  N  14  
Y77  C01  H2   SING  N  N  15  
Y77  C01  H3   SING  N  N  16  
Y77  C03  H4   SING  N  N  17  
Y77  C03  H5   SING  N  N  18  
Y77  C04  H6   SING  N  N  19  
Y77  C04  H7   SING  N  N  20  
Y77  C08  H8   SING  N  N  21  
Y77  C09  H9   SING  N  N  22  
Y77  C09  H10  SING  N  N  23  
Y77  N07  H11  SING  N  N  24  
Y77  O12  H12  SING  N  N  25  
Y77  O13  H13  SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y77  InChI             InChI                 1.03   "InChI=1S/C6H13N3O4P/c1-6(2-4-8-9-7)3-5-13-14(10,11)12/h3,7H,2,4-5H2,1H3,(H2,10,11,12)/b6-3-"  
Y77  InChIKey          InChI                 1.03   SCRLLCVSAUXFQL-UTCJRWHESA-N  
Y77  SMILES_CANONICAL  CACTVS                3.385  "C\C(CCN=[N]=N)=C\CO[P](O)(O)=O"  
Y77  SMILES            CACTVS                3.385  "CC(CCN=[N]=N)=CCO[P](O)(O)=O"  
Y77  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C/C(=C/COP(=O)(O)O)/CCN=[N]=N"  
Y77  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=CCOP(=O)(O)O)CCN=[N]=N"  
#
_pdbx_chem_comp_identifier.comp_id          Y77
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(~{Z})-5-[(azanylidene-$l^{4}-azanylidene)amino]-3-methyl-pent-2-enyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y77  "Create component"  2021-02-09  RCSB  
Y77  "Initial release"   2021-12-22  RCSB  
##
