data_2J8
# 
_chem_comp.id                                    2J8 
_chem_comp.name                                  "(4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 N6 O3 Se3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "cyclic-tris-(S)-valineselenazole; QZ59-SSS" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-10-25 
_chem_comp.pdbx_modified_date                    2020-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        687.413 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2J8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4M2T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2J8 SE1  SE1  SE 0 0 Y N N 14.837 63.145 5.191  -1.794 5.089  -0.485 SE1  2J8 1  
2J8 SE2  SE2  SE 0 0 Y N N 14.460 56.709 -1.057 5.369  -0.968 -0.363 SE2  2J8 2  
2J8 SE3  SE3  SE 0 0 Y N N 22.205 59.454 1.389  -3.470 -4.088 -0.567 SE3  2J8 3  
2J8 C01  C01  C  0 1 Y N N 20.002 60.281 2.666  -3.376 -1.504 -0.338 C01  2J8 4  
2J8 C02  C02  C  0 1 N N N 19.015 61.089 3.491  -3.658 -0.058 -0.247 C02  2J8 5  
2J8 N03  N03  N  0 1 N N N 18.550 62.350 3.073  -2.628 0.822  -0.065 N03  2J8 6  
2J8 C04  C04  C  0 1 N N S 17.580 63.236 3.776  -3.049 2.238  0.052  C04  2J8 7  
2J8 C05  C05  C  0 1 Y N N 16.268 62.460 4.031  -1.855 3.130  -0.162 C05  2J8 8  
2J8 C07  C07  C  0 1 Y N N 13.935 61.572 4.821  0.188  5.043  -0.583 C07  2J8 9  
2J8 C08  C08  C  0 1 Y N N 14.690 60.788 3.970  0.407  3.715  -0.384 C08  2J8 10 
2J8 C09  C09  C  0 1 N N N 14.195 59.440 3.462  1.802  3.236  -0.382 C09  2J8 11 
2J8 N10  N10  N  0 1 N N N 13.776 59.312 2.128  2.071  1.910  -0.195 N10  2J8 12 
2J8 C11  C11  C  0 1 N N S 13.296 58.118 1.442  3.516  1.584  -0.152 C11  2J8 13 
2J8 C12  C12  C  0 1 Y N N 14.511 57.404 0.758  3.693  0.090  -0.231 C12  2J8 14 
2J8 C14  C14  C  0 1 Y N N 16.204 56.161 -0.789 4.336  -2.662 -0.384 C14  2J8 15 
2J8 C15  C15  C  0 1 Y N N 16.595 56.488 0.465  3.069  -2.171 -0.303 C15  2J8 16 
2J8 C16  C16  C  0 1 N N N 17.989 56.186 0.910  1.953  -3.134 -0.288 C16  2J8 17 
2J8 N17  N17  N  0 1 N N N 18.936 57.060 0.438  0.662  -2.688 -0.230 N17  2J8 18 
2J8 C18  C18  C  0 1 N N S 20.334 57.143 0.628  -0.350 -3.769 -0.174 C18  2J8 19 
2J8 C19  C19  C  0 1 Y N N 20.531 58.461 1.378  -1.729 -3.174 -0.287 C19  2J8 20 
2J8 C21  C21  C  0 1 Y N N 21.283 60.681 2.463  -4.426 -2.349 -0.528 C21  2J8 21 
2J8 N22  N22  N  0 1 Y N N 19.624 59.084 2.066  -2.113 -1.932 -0.230 N22  2J8 22 
2J8 N23  N23  N  0 1 Y N N 15.681 57.184 1.284  2.805  -0.861 -0.231 N23  2J8 23 
2J8 N24  N24  N  0 1 Y N N 15.942 61.271 3.555  -0.586 2.840  -0.189 N24  2J8 24 
2J8 O25  O25  O  0 1 N N N 18.605 60.595 4.549  -4.801 0.347  -0.333 O25  2J8 25 
2J8 O26  O26  O  0 1 N N N 14.163 58.454 4.225  2.714  4.023  -0.549 O26  2J8 26 
2J8 O27  O27  O  0 1 N N N 18.251 55.198 1.621  2.181  -4.327 -0.328 O27  2J8 27 
2J8 C28  C28  C  0 1 N N N 17.389 64.618 2.988  -3.628 2.485  1.447  C28  2J8 28 
2J8 C29  C29  C  0 1 N N N 16.113 64.686 2.139  -4.062 3.947  1.567  C29  2J8 29 
2J8 C30  C30  C  0 1 N N N 17.578 65.917 3.806  -4.837 1.574  1.666  C30  2J8 30 
2J8 C31  C31  C  0 1 N N N 12.087 58.435 0.412  4.117  2.100  1.157  C31  2J8 31 
2J8 C32  C32  C  0 1 N N N 10.693 58.008 0.903  3.514  1.331  2.334  C32  2J8 32 
2J8 C33  C33  C  0 1 N N N 11.984 59.870 -0.065 5.634  1.895  1.138  C33  2J8 33 
2J8 C34  C34  C  0 1 N N N 21.057 57.196 -0.783 -0.225 -4.516 1.155  C34  2J8 34 
2J8 C35  C35  C  0 1 N N N 20.184 56.865 -2.005 -0.591 -3.576 2.306  C35  2J8 35 
2J8 C36  C36  C  0 1 N N N 22.310 56.368 -0.874 -1.174 -5.716 1.157  C36  2J8 36 
2J8 HN03 HN03 H  0 0 N N N 18.912 62.690 2.205  -1.701 0.543  -0.017 HN03 2J8 37 
2J8 H04  H04  H  0 1 N N N 18.005 63.490 4.758  -3.806 2.457  -0.701 H04  2J8 38 
2J8 H07  H07  H  0 1 N N N 12.964 61.307 5.212  0.892  5.845  -0.749 H07  2J8 39 
2J8 HN10 HN10 H  0 0 N N N 13.811 60.146 1.578  1.377  1.240  -0.098 HN10 2J8 40 
2J8 H11  H11  H  0 1 N N N 12.893 57.423 2.194  4.021  2.055  -0.995 H11  2J8 41 
2J8 H14  H14  H  0 1 N N N 16.818 55.657 -1.521 4.681  -3.684 -0.443 H14  2J8 42 
2J8 HN17 HN17 H  0 0 N N N 18.566 57.776 -0.154 0.429  -1.747 -0.226 HN17 2J8 43 
2J8 H18  H18  H  0 1 N N N 20.727 56.301 1.217  -0.186 -4.463 -0.998 H18  2J8 44 
2J8 H21  H21  H  0 1 N N N 21.713 61.586 2.867  -5.479 -2.134 -0.628 H21  2J8 45 
2J8 H28  H28  H  0 1 N N N 18.212 64.627 2.258  -2.868 2.269  2.199  H28  2J8 46 
2J8 H29  H29  H  0 1 N N N 16.059 65.662 1.634  -4.820 4.164  0.815  H29  2J8 47 
2J8 H29A H29A H  0 0 N N N 16.131 63.884 1.386  -4.474 4.124  2.561  H29A 2J8 48 
2J8 H29B H29B H  0 0 N N N 15.234 64.560 2.788  -3.200 4.596  1.411  H29B 2J8 49 
2J8 H30  H30  H  0 1 N N N 17.421 66.788 3.153  -5.596 1.791  0.914  H30  2J8 50 
2J8 H30A H30A H  0 0 N N N 16.850 65.940 4.630  -4.528 0.533  1.581  H30A 2J8 51 
2J8 H30B H30B H  0 0 N N N 18.598 65.946 4.217  -5.249 1.751  2.660  H30B 2J8 52 
2J8 H31  H31  H  0 1 N N N 12.297 57.826 -0.479 3.896  3.162  1.265  H31  2J8 53 
2J8 H32  H32  H  0 1 N N N 9.941  58.262 0.141  3.812  0.284  2.275  H32  2J8 54 
2J8 H32A H32A H  0 0 N N N 10.683 56.922 1.079  3.874  1.759  3.270  H32A 2J8 55 
2J8 H32B H32B H  0 0 N N N 10.458 58.534 1.840  2.427  1.403  2.296  H32B 2J8 56 
2J8 H33  H33  H  0 1 N N N 11.133 59.967 -0.755 6.063  2.443  0.299  H33  2J8 57 
2J8 H33A H33A H  0 0 N N N 11.833 60.534 0.799  6.062  2.263  2.070  H33A 2J8 58 
2J8 H33B H33B H  0 0 N N N 12.912 60.151 -0.585 5.856  0.834  1.030  H33B 2J8 59 
2J8 H34  H34  H  0 1 N N N 21.370 58.243 -0.911 0.800  -4.863 1.282  H34  2J8 60 
2J8 H35  H35  H  0 1 N N N 20.791 56.934 -2.920 -1.587 -3.166 2.138  H35  2J8 61 
2J8 H35A H35A H  0 0 N N N 19.786 55.844 -1.906 -0.579 -4.129 3.245  H35A 2J8 62 
2J8 H35B H35B H  0 0 N N N 19.350 57.580 -2.064 0.133  -2.762 2.354  H35B 2J8 63 
2J8 H36  H36  H  0 1 N N N 22.741 56.464 -1.881 -0.914 -6.386 0.337  H36  2J8 64 
2J8 H36A H36A H  0 0 N N N 23.038 56.721 -0.128 -1.085 -6.249 2.104  H36A 2J8 65 
2J8 H36B H36B H  0 0 N N N 22.067 55.313 -0.678 -2.200 -5.369 1.030  H36B 2J8 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2J8 C05 SE1  SING Y N 1  
2J8 C07 SE1  SING Y N 2  
2J8 SE2 C14  SING Y N 3  
2J8 SE2 C12  SING Y N 4  
2J8 C19 SE3  SING Y N 5  
2J8 SE3 C21  SING Y N 6  
2J8 N22 C01  SING Y N 7  
2J8 C21 C01  DOUB Y N 8  
2J8 C01 C02  SING N N 9  
2J8 N03 C02  SING N N 10 
2J8 C02 O25  DOUB N N 11 
2J8 N03 C04  SING N N 12 
2J8 N03 HN03 SING N N 13 
2J8 C28 C04  SING N N 14 
2J8 C04 C05  SING N N 15 
2J8 C04 H04  SING N N 16 
2J8 N24 C05  DOUB Y N 17 
2J8 C08 C07  DOUB Y N 18 
2J8 C07 H07  SING N N 19 
2J8 C09 C08  SING N N 20 
2J8 N24 C08  SING Y N 21 
2J8 N10 C09  SING N N 22 
2J8 C09 O26  DOUB N N 23 
2J8 C11 N10  SING N N 24 
2J8 N10 HN10 SING N N 25 
2J8 C31 C11  SING N N 26 
2J8 C12 C11  SING N N 27 
2J8 C11 H11  SING N N 28 
2J8 C12 N23  DOUB Y N 29 
2J8 C14 C15  DOUB Y N 30 
2J8 C14 H14  SING N N 31 
2J8 C15 C16  SING N N 32 
2J8 C15 N23  SING Y N 33 
2J8 N17 C16  SING N N 34 
2J8 C16 O27  DOUB N N 35 
2J8 N17 C18  SING N N 36 
2J8 N17 HN17 SING N N 37 
2J8 C34 C18  SING N N 38 
2J8 C18 C19  SING N N 39 
2J8 C18 H18  SING N N 40 
2J8 C19 N22  DOUB Y N 41 
2J8 C21 H21  SING N N 42 
2J8 C29 C28  SING N N 43 
2J8 C28 C30  SING N N 44 
2J8 C28 H28  SING N N 45 
2J8 C29 H29  SING N N 46 
2J8 C29 H29A SING N N 47 
2J8 C29 H29B SING N N 48 
2J8 C30 H30  SING N N 49 
2J8 C30 H30A SING N N 50 
2J8 C30 H30B SING N N 51 
2J8 C33 C31  SING N N 52 
2J8 C31 C32  SING N N 53 
2J8 C31 H31  SING N N 54 
2J8 C32 H32  SING N N 55 
2J8 C32 H32A SING N N 56 
2J8 C32 H32B SING N N 57 
2J8 C33 H33  SING N N 58 
2J8 C33 H33A SING N N 59 
2J8 C33 H33B SING N N 60 
2J8 C35 C34  SING N N 61 
2J8 C36 C34  SING N N 62 
2J8 C34 H34  SING N N 63 
2J8 C35 H35  SING N N 64 
2J8 C35 H35A SING N N 65 
2J8 C35 H35B SING N N 66 
2J8 C36 H36  SING N N 67 
2J8 C36 H36A SING N N 68 
2J8 C36 H36B SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2J8 SMILES           ACDLabs              12.01 "O=C3NC(c1[se]cc(n1)C(=O)NC(c4nc(C(=O)NC(c2[se]cc3n2)C(C)C)c[se]4)C(C)C)C(C)C"                                                                                                                             
2J8 InChI            InChI                1.03  "InChI=1S/C24H30N6O3Se3/c1-10(2)16-22-25-14(7-34-22)20(32)29-18(12(5)6)24-27-15(9-36-24)21(33)30-17(11(3)4)23-26-13(8-35-23)19(31)28-16/h7-12,16-18H,1-6H3,(H,28,31)(H,29,32)(H,30,33)/t16-,17-,18-/m0/s1" 
2J8 InChIKey         InChI                1.03  FWRNUSMIPQTUHH-BZSNNMDCSA-N                                                                                                                                                                                
2J8 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H]1NC(=O)c2c[se]c(n2)[C@@H](NC(=O)c3c[se]c(n3)[C@@H](NC(=O)c4c[se]c1n4)C(C)C)C(C)C"                                                                                                              
2J8 SMILES           CACTVS               3.385 "CC(C)[CH]1NC(=O)c2c[se]c(n2)[CH](NC(=O)c3c[se]c(n3)[CH](NC(=O)c4c[se]c1n4)C(C)C)C(C)C"                                                                                                                    
2J8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1c2nc(c[se]2)C(=O)N[C@H](c3nc(c[se]3)C(=O)N[C@H](c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C"                                                                                                               
2J8 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)C1c2nc(c[se]2)C(=O)NC(c3nc(c[se]3)C(=O)NC(c4nc(c[se]4)C(=O)N1)C(C)C)C(C)C"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           2J8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(4S,11S,18S)-4,11,18-tri(propan-2-yl)-6,13,20-triselena-3,10,17,22,23,24-hexaazatetracyclo[17.2.1.1~5,8~.1~12,15~]tetracosa-1(21),5(24),7,12(23),14,19(22)-hexaene-2,9,16-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2J8 "Create component"   2013-10-25 RCSB 
2J8 "Other modification" 2013-11-01 RCSB 
2J8 "Initial release"    2013-11-13 RCSB 
2J8 "Modify synonyms"    2020-05-26 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 2J8 "cyclic-tris-(S)-valineselenazole" ? ? 
2 2J8 QZ59-SSS                           ? ? 
# 
