data_868
# 
_chem_comp.id                                    868 
_chem_comp.name                                  "S-[2-[3-[[(2S)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (2R)-2-azanylpropanethioate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H28 N3 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        429.426 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     868 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7X17 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
868 N1  N1  N 0 1 N N N N N N -7.931  22.337 30.513 -10.901 1.574  -0.769 N1  868 1  
868 N3  N2  N 0 1 N N N N N N -7.596  28.734 21.625 1.196   -0.833 -0.665 N3  868 2  
868 C4  C1  C 0 1 N N N N N N -9.335  25.656 26.955 -6.062  0.203  -0.173 C4  868 3  
868 C5  C2  C 0 1 N N N N N N -10.080 25.759 25.627 -4.940  -0.767 0.201  C5  868 4  
868 C6  C3  C 0 1 N N N N N N -9.900  27.933 24.361 -2.523  -0.931 -0.063 C6  868 5  
868 C7  C4  C 0 1 N N N N N N -8.910  28.841 23.574 -1.206  -0.390 -0.558 C7  868 6  
868 C8  C5  C 0 1 N N N N N N -8.985  28.544 22.084 -0.083  -1.359 -0.184 C8  868 7  
868 C10 C6  C 0 1 N N S N N N -8.117  30.413 19.800 3.633   -1.041 -1.039 C10 868 8  
868 C13 C7  C 0 1 N N N N N N -7.151  29.296 17.717 4.951   -1.802 0.942  C13 868 9  
868 O6  O1  O 0 1 N N N N N N -5.486  34.045 16.956 7.912   2.559  -0.456 O6  868 10 
868 P1  P1  P 0 1 N N N N N N -6.246  33.333 15.927 8.135   1.134  0.260  P1  868 11 
868 O7  O2  O 0 1 N N N N N N -5.527  32.855 14.748 8.948   0.262  -0.619 O7  868 12 
868 O8  O3  O 0 1 N N N N N N -7.648  33.730 15.772 8.902   1.350  1.659  O8  868 13 
868 O5  O4  O 0 1 N N N N N N -6.440  31.860 16.689 6.708   0.440  0.531  O5  868 14 
868 C14 C8  C 0 1 N N N N N N -6.640  31.730 18.097 5.833   0.023  -0.519 C14 868 15 
868 C11 C9  C 0 1 N N N N N N -7.701  30.611 18.303 4.569   -0.594 0.085  C11 868 16 
868 C12 C10 C 0 1 N N N N N N -8.986  30.973 17.546 3.861   0.446  0.956  C12 868 17 
868 O4  O5  O 0 1 N N N N N N -8.267  31.700 20.414 3.378   0.061  -1.913 O4  868 18 
868 C9  C11 C 0 1 N N N N N N -7.122  29.540 20.623 2.333   -1.524 -0.448 C9  868 19 
868 O3  O6  O 0 1 N N N N N N -5.919  29.585 20.363 2.311   -2.534 0.222  O3  868 20 
868 O2  O7  O 0 1 N N N N N N -11.053 28.302 24.572 -2.559  -1.989 0.530  O2  868 21 
868 N2  N3  N 0 1 N N N N N N -9.372  26.770 24.832 -3.660  -0.240 -0.280 N2  868 22 
868 S1  S1  S 0 1 N N N N N N -10.325 24.680 28.199 -7.644  -0.447 0.421  S1  868 23 
868 C3  C12 C 0 1 N N N N N N -9.145  24.218 29.473 -8.695  0.793  -0.113 C3  868 24 
868 O1  O8  O 0 1 N N N N N N -9.003  24.844 30.524 -8.249  1.751  -0.711 O1  868 25 
868 C2  C13 C 0 1 N N R N N N -8.338  22.927 29.221 -10.174 0.696  0.158  C2  868 26 
868 C1  C14 C 0 1 N N N N N N -7.103  23.215 28.353 -10.458 1.129  1.598  C1  868 27 
868 H1  H1  H 0 1 N N N N N N -8.743  22.155 31.067 -11.898 1.479  -0.651 H1  868 28 
868 H2  H2  H 0 1 N N N N N N -7.441  21.481 30.349 -10.614 2.535  -0.657 H2  868 29 
868 H4  H4  H 0 1 N N N N N N -6.905  28.201 22.112 1.226   0.013  -1.139 H4  868 30 
868 H5  H5  H 0 1 N N N N N N -8.370  25.154 26.789 -5.873  1.173  0.287  H5  868 31 
868 H6  H6  H 0 1 N N N N N N -9.159  26.668 27.349 -6.100  0.316  -1.256 H6  868 32 
868 H7  H7  H 0 1 N N N N N N -11.121 26.070 25.798 -4.902  -0.879 1.284  H7  868 33 
868 H8  H8  H 0 1 N N N N N N -10.068 24.789 25.108 -5.129  -1.737 -0.259 H8  868 34 
868 H9  H9  H 0 1 N N N N N N -7.886  28.654 23.929 -1.244  -0.277 -1.641 H9  868 35 
868 H10 H10 H 0 1 N N N N N N -9.171  29.896 23.747 -1.017  0.580  -0.098 H10 868 36 
868 H11 H11 H 0 1 N N N N N N -9.666  29.244 21.577 -0.273  -2.329 -0.644 H11 868 37 
868 H12 H12 H 0 1 N N N N N N -9.321  27.512 21.905 -0.046  -1.472 0.899  H12 868 38 
868 H13 H13 H 0 1 N N N N N N -9.089  29.898 19.805 4.100   -1.850 -1.601 H13 868 39 
868 H14 H14 H 0 1 N N N N N N -6.228  29.016 18.246 5.705   -1.507 1.671  H14 868 40 
868 H15 H15 H 0 1 N N N N N N -7.899  28.499 17.839 4.067   -2.172 1.463  H15 868 41 
868 H16 H16 H 0 1 N N N N N N -6.934  29.434 16.648 5.351   -2.589 0.303  H16 868 42 
868 H17 H17 H 0 1 N N N N N N -4.574  34.100 16.696 7.386   3.182  0.064  H17 868 43 
868 H18 H18 H 0 1 N N N N N N -7.912  33.614 14.867 9.771   1.764  1.571  H18 868 44 
868 H19 H19 H 0 1 N N N N N N -5.696  31.451 18.589 5.561   0.884  -1.129 H19 868 45 
868 H20 H20 H 0 1 N N N N N N -7.005  32.679 18.516 6.338   -0.718 -1.139 H20 868 46 
868 H21 H21 H 0 1 N N N N N N -9.397  31.911 17.948 4.528   0.765  1.757  H21 868 47 
868 H22 H22 H 0 1 N N N N N N -8.758  31.101 16.478 3.589   1.307  0.345  H22 868 48 
868 H23 H23 H 0 1 N N N N N N -9.724  30.166 17.669 2.961   0.007  1.386  H23 868 49 
868 H24 H24 H 0 1 N N N N N N -8.520  31.590 21.323 2.962   0.819  -1.480 H24 868 50 
868 H25 H25 H 0 1 N N N N N N -8.413  26.587 24.616 -3.631  0.605  -0.754 H25 868 51 
868 H26 H26 H 0 1 N N N N N N -8.982  22.215 28.685 -10.503 -0.333 0.016  H26 868 52 
868 H27 H27 H 0 1 N N N N N N -6.545  22.282 28.187 -10.130 2.158  1.740  H27 868 53 
868 H28 H28 H 0 1 N N N N N N -7.424  23.627 27.385 -11.528 1.059  1.794  H28 868 54 
868 H29 H29 H 0 1 N N N N N N -6.456  23.943 28.865 -9.919  0.477  2.286  H29 868 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
868 O7  P1  DOUB N N 1  
868 O8  P1  SING N N 2  
868 P1  O5  SING N N 3  
868 P1  O6  SING N N 4  
868 O5  C14 SING N N 5  
868 C12 C11 SING N N 6  
868 C13 C11 SING N N 7  
868 C14 C11 SING N N 8  
868 C11 C10 SING N N 9  
868 C10 O4  SING N N 10 
868 C10 C9  SING N N 11 
868 O3  C9  DOUB N N 12 
868 C9  N3  SING N N 13 
868 N3  C8  SING N N 14 
868 C8  C7  SING N N 15 
868 C7  C6  SING N N 16 
868 C6  O2  DOUB N N 17 
868 C6  N2  SING N N 18 
868 N2  C5  SING N N 19 
868 C5  C4  SING N N 20 
868 C4  S1  SING N N 21 
868 S1  C3  SING N N 22 
868 C1  C2  SING N N 23 
868 C2  C3  SING N N 24 
868 C2  N1  SING N N 25 
868 C3  O1  DOUB N N 26 
868 N1  H1  SING N N 27 
868 N1  H2  SING N N 28 
868 N3  H4  SING N N 29 
868 C4  H5  SING N N 30 
868 C4  H6  SING N N 31 
868 C5  H7  SING N N 32 
868 C5  H8  SING N N 33 
868 C7  H9  SING N N 34 
868 C7  H10 SING N N 35 
868 C8  H11 SING N N 36 
868 C8  H12 SING N N 37 
868 C10 H13 SING N N 38 
868 C13 H14 SING N N 39 
868 C13 H15 SING N N 40 
868 C13 H16 SING N N 41 
868 O6  H17 SING N N 42 
868 O8  H18 SING N N 43 
868 C14 H19 SING N N 44 
868 C14 H20 SING N N 45 
868 C12 H21 SING N N 46 
868 C12 H22 SING N N 47 
868 C12 H23 SING N N 48 
868 O4  H24 SING N N 49 
868 N2  H25 SING N N 50 
868 C2  H26 SING N N 51 
868 C1  H27 SING N N 52 
868 C1  H28 SING N N 53 
868 C1  H29 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
868 InChI            InChI                1.03  "InChI=1S/C14H28N3O8PS/c1-9(15)13(21)27-7-6-16-10(18)4-5-17-12(20)11(19)14(2,3)8-25-26(22,23)24/h9,11,19H,4-8,15H2,1-3H3,(H,16,18)(H,17,20)(H2,22,23,24)/t9-,11-/m1/s1" 
868 InChIKey         InChI                1.03  YOANCVNRLJJRIX-MWLCHTKSSA-N                                                                                                                                             
868 SMILES_CANONICAL CACTVS               3.385 "C[C@@H](N)C(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                         
868 SMILES           CACTVS               3.385 "C[CH](N)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                             
868 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O)N"                                                                                                             
868 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)N"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           868 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (2~{R})-2-azanylpropanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
868 "Create component" 2022-03-02 PDBJ 
868 "Initial release"  2022-07-13 RCSB 
868 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            868 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
