data_GY8
#

_chem_comp.id                                   GY8
_chem_comp.name                                 
;2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropy
rimidine-4-carboxamide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H21 Cl2 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-29928
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-22
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       514.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GY8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W7U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY8  C1   C1   C   0  1  Y  N  N  126.349  105.321  285.582  -4.620   0.449  -1.452  C1   GY8   1  
GY8  C10  C2   C   0  1  Y  N  N  132.989  105.219  282.573   6.593   0.753   0.156  C10  GY8   2  
GY8  C11  C3   C   0  1  Y  N  N  133.011  103.853  282.816   6.026   1.834  -0.493  C11  GY8   3  
GY8  C12  C4   C   0  1  Y  N  N  132.265  102.987  282.030   6.784   2.967  -0.734  C12  GY8   4  
GY8  C13  C5   C   0  1  Y  N  N  131.501  103.509  281.000   8.103   3.022  -0.328  C13  GY8   5  
GY8  C14  C6   C   0  1  Y  N  N  131.476  104.870  280.760   8.669   1.941   0.321  C14  GY8   6  
GY8  C15  C7   C   0  1  Y  N  N  132.221  105.738  281.540   7.917   0.807   0.559  C15  GY8   7  
GY8  C16  C8   C   0  1  N  N  N  133.921  103.562  283.981   4.583   1.527  -0.833  C16  GY8   8  
GY8  C17  C9   C   0  1  N  N  N  131.067  106.450  288.446   0.725  -3.184  -0.335  C17  GY8   9  
GY8  C18  C10  C   0  1  N  N  N  129.824  106.348  289.080  -0.640  -3.469   0.125  C18  GY8  10  
GY8  C19  C11  C   0  1  N  N  N  128.711  102.014  287.723  -1.871  -0.926   3.265  C19  GY8  11  
GY8  C2   C12  C   0  1  Y  N  N  127.649  105.248  285.074  -3.876   1.238  -0.567  C2   GY8  12  
GY8  C20  C13  C   0  1  N  N  N  129.821  101.468  286.838  -3.271  -0.287   3.465  C20  GY8  13  
GY8  C21  C14  C   0  1  N  N  N  129.325  101.822  285.451  -3.785  -0.202   2.006  C21  GY8  14  
GY8  C22  C15  C   0  1  Y  N  N  128.367  106.444  285.011  -4.372   2.505  -0.237  C22  GY8  15  
GY8  C23  C16  C   0  1  Y  N  N  127.763  107.625  285.422  -5.567   2.923  -0.794  C23  GY8  16  
GY8  C24  C17  C   0  1  Y  N  N  125.825  106.544  285.978  -5.802   0.950  -1.966  C24  GY8  17  
GY8  C3   C18  C   0  1  N  N  N  128.253  103.932  284.676  -2.603   0.747   0.004  C3   GY8  18  
GY8  C4   C19  C   0  1  N  N  S  128.460  103.401  287.107  -1.393  -0.311   1.933  C4   GY8  19  
GY8  C5   C20  C   0  1  N  N  N  129.360  104.507  287.615  -0.655  -1.348   1.126  C5   GY8  20  
GY8  C6   C21  C   0  1  N  N  N  131.399  105.584  287.442   1.277  -1.960   0.005  C6   GY8  21  
GY8  C7   C22  C   0  1  N  N  N  132.711  105.656  286.709   2.651  -1.616  -0.426  C7   GY8  22  
GY8  C8   C23  C   0  1  N  N  N  133.936  104.911  284.727   4.457  -0.006  -0.715  C8   GY8  23  
GY8  C9   C24  C   0  1  N  N  N  133.880  105.921  283.563   5.569  -0.353   0.297  C9   GY8  24  
GY8  N1   N1   N   0  1  N  N  N  128.649  103.115  285.664  -2.594   0.134   1.205  N1   GY8  25  
GY8  N2   N2   N   0  1  N  N  N  130.548  104.638  287.020   0.554  -1.085   0.728  N2   GY8  26  
GY8  N3   N3   N   0  1  N  N  N  132.739  105.011  285.538   3.141  -0.382  -0.193  N3   GY8  27  
GY8  N4   N4   N   0  1  N  N  N  128.984  105.351  288.632  -1.276  -2.520   0.847  N4   GY8  28  
GY8  N5   N5   N   0  1  Y  N  N  126.521  107.673  285.898  -6.235   2.147  -1.624  N5   GY8  29  
GY8  O1   O1   O   0  1  N  N  N  128.402  103.627  283.493  -1.564   0.895  -0.609  O1   GY8  30  
GY8  O2   O2   O   0  1  N  N  N  133.678  106.292  287.130   3.337  -2.446  -0.990  O2   GY8  31  
GY8  O3   O3   O   0  1  N  N  N  131.880  107.417  288.890   1.423  -4.091  -1.063  O3   GY8  32  
GY8  O4   O4   O   0  1  N  N  N  129.450  107.093  290.004  -1.183  -4.529  -0.135  O4   GY8  33  
GY8  CL1  CL1  CL  0  0  N  N  N  125.379  103.902  285.710  -4.063  -1.133  -1.904  CL1  GY8  34  
GY8  CL2  CL2  CL  0  0  N  N  N  129.984  106.478  284.411  -3.501   3.535   0.855  CL2  GY8  35  
GY8  H1   H1   H   0  1  N  N  N  132.280  101.924  282.218   6.341   3.812  -1.242  H1   GY8  36  
GY8  H2   H2   H   0  1  N  N  N  130.919  102.846  280.378   8.691   3.907  -0.518  H2   GY8  37  
GY8  H3   H3   H   0  1  N  N  N  130.869  105.260  279.956   9.701   1.982   0.640  H3   GY8  38  
GY8  H4   H4   H   0  1  N  N  N  132.205  106.801  281.348   8.360  -0.036   1.066  H4   GY8  39  
GY8  H5   H5   H   0  1  N  N  N  133.514  102.760  284.615   3.916   2.017  -0.124  H5   GY8  40  
GY8  H6   H6   H   0  1  N  N  N  134.929  103.284  283.640   4.358   1.849  -1.850  H6   GY8  41  
GY8  H7   H7   H   0  1  N  N  N  127.811  101.384  287.669  -1.202  -0.649   4.080  H7   GY8  42  
GY8  H8   H8   H   0  1  N  N  N  129.039  102.096  288.770  -1.950  -2.010   3.184  H8   GY8  43  
GY8  H9   H9   H   0  1  N  N  N  129.928  100.380  286.958  -3.912  -0.930   4.068  H9   GY8  44  
GY8  H10  H10  H   0  1  N  N  N  130.782  101.957  287.055  -3.188   0.705   3.909  H10  GY8  45  
GY8  H11  H11  H   0  1  N  N  N  128.621  101.064  285.077  -4.197  -1.161   1.690  H11  GY8  46  
GY8  H12  H12  H   0  1  N  N  N  130.162  101.925  284.745  -4.537   0.582   1.916  H12  GY8  47  
GY8  H13  H13  H   0  1  N  N  N  128.325  108.544  285.352  -5.958   3.898  -0.546  H13  GY8  48  
GY8  H14  H14  H   0  1  N  N  N  124.817  106.579  286.364  -6.380   0.351  -2.654  H14  GY8  49  
GY8  H15  H15  H   0  1  N  N  N  127.412  103.682  287.289  -0.740   0.539   2.130  H15  GY8  50  
GY8  H16  H16  H   0  1  N  N  N  134.858  105.031  285.315   4.642  -0.485  -1.677  H16  GY8  51  
GY8  H17  H17  H   0  1  N  N  N  134.880  106.100  283.142   6.017  -1.316   0.052  H17  GY8  52  
GY8  H18  H18  H   0  1  N  N  N  133.442  106.877  283.886   5.167  -0.369   1.310  H18  GY8  53  
GY8  H19  H19  H   0  1  N  N  N  131.899  104.580  285.208   2.623   0.257   0.321  H19  GY8  54  
GY8  H20  H20  H   0  1  N  N  N  128.085  105.240  289.055  -2.180  -2.675   1.162  H20  GY8  55  
GY8  H21  H21  H   0  1  N  N  N  131.453  107.893  289.593   0.941  -4.911  -1.237  H21  GY8  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY8  C14  C13  DOUB  Y  N   1  
GY8  C14  C15  SING  Y  N   2  
GY8  C13  C12  SING  Y  N   3  
GY8  C15  C10  DOUB  Y  N   4  
GY8  C12  C11  DOUB  Y  N   5  
GY8  C10  C11  SING  Y  N   6  
GY8  C10  C9   SING  N  N   7  
GY8  C11  C16  SING  N  N   8  
GY8  O1   C3   DOUB  N  N   9  
GY8  C9   C8   SING  N  N  10  
GY8  C16  C8   SING  N  N  11  
GY8  CL2  C22  SING  N  N  12  
GY8  C3   C2   SING  N  N  13  
GY8  C3   N1   SING  N  N  14  
GY8  C8   N3   SING  N  N  15  
GY8  C22  C2   DOUB  Y  N  16  
GY8  C22  C23  SING  Y  N  17  
GY8  C2   C1   SING  Y  N  18  
GY8  C23  N5   DOUB  Y  N  19  
GY8  C21  N1   SING  N  N  20  
GY8  C21  C20  SING  N  N  21  
GY8  N3   C7   SING  N  N  22  
GY8  C1   CL1  SING  N  N  23  
GY8  C1   C24  DOUB  Y  N  24  
GY8  N1   C4   SING  N  N  25  
GY8  N5   C24  SING  Y  N  26  
GY8  C7   O2   DOUB  N  N  27  
GY8  C7   C6   SING  N  N  28  
GY8  C20  C19  SING  N  N  29  
GY8  N2   C6   SING  N  N  30  
GY8  N2   C5   DOUB  N  N  31  
GY8  C4   C5   SING  N  N  32  
GY8  C4   C19  SING  N  N  33  
GY8  C6   C17  DOUB  N  N  34  
GY8  C5   N4   SING  N  N  35  
GY8  C17  O3   SING  N  N  36  
GY8  C17  C18  SING  N  N  37  
GY8  N4   C18  SING  N  N  38  
GY8  C18  O4   DOUB  N  N  39  
GY8  C12  H1   SING  N  N  40  
GY8  C13  H2   SING  N  N  41  
GY8  C14  H3   SING  N  N  42  
GY8  C15  H4   SING  N  N  43  
GY8  C16  H5   SING  N  N  44  
GY8  C16  H6   SING  N  N  45  
GY8  C19  H7   SING  N  N  46  
GY8  C19  H8   SING  N  N  47  
GY8  C20  H9   SING  N  N  48  
GY8  C20  H10  SING  N  N  49  
GY8  C21  H11  SING  N  N  50  
GY8  C21  H12  SING  N  N  51  
GY8  C23  H13  SING  N  N  52  
GY8  C24  H14  SING  N  N  53  
GY8  C4   H15  SING  N  N  54  
GY8  C8   H16  SING  N  N  55  
GY8  C9   H17  SING  N  N  56  
GY8  C9   H18  SING  N  N  57  
GY8  N3   H19  SING  N  N  58  
GY8  N4   H20  SING  N  N  59  
GY8  O3   H21  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY8  SMILES            ACDLabs               12.01  "c1(Cl)cncc(c1C(N5CCCC5C=4NC(C(O)=C(C(=O)NC2Cc3c(C2)cccc3)N=4)=O)=O)Cl"  
GY8  InChI             InChI                 1.03   "InChI=1S/C24H21Cl2N5O4/c25-15-10-27-11-16(26)18(15)24(35)31-7-3-6-17(31)21-29-19(20(32)23(34)30-21)22(33)28-14-8-12-4-1-2-5-13(12)9-14/h1-2,4-5,10-11,14,17,32H,3,6-9H2,(H,28,33)(H,29,30,34)/t17-/m0/s1"  
GY8  InChIKey          InChI                 1.03   NJMRSWDIFAMYDM-KRWDZBQOSA-N  
GY8  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(Cl)cncc3Cl)C(=O)NC4Cc5ccccc5C4"  
GY8  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(Cl)cncc3Cl)C(=O)NC4Cc5ccccc5C4"  
GY8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)c5c(cncc5Cl)Cl)O"  
GY8  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)c5c(cncc5Cl)Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GY8  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
GY8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[3,5-bis(chloranyl)pyridin-4-yl]carbonylpyrrolidin-2-yl]-~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY8  "Create component"  2017-06-22  RCSB  
GY8  "Initial release"   2017-12-27  RCSB  
GY8  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GY8
_pdbx_chem_comp_synonyms.name        SRI-29928
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
