data_IG8
# 
_chem_comp.id                                    IG8 
_chem_comp.name                                  "(3~{R})-3-oxidanyldecanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H20 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.264 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IG8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q1L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IG8 CA   C1  C 0 1 N N N N N N 0.202  4.474  3.991  3.067  0.840  -0.166 CA   IG8 1  
IG8 C    C2  C 0 1 N N N N N N 1.186  3.350  3.658  4.340  0.125  0.206  C    IG8 2  
IG8 O    O1  O 0 1 N N N N N N 1.018  2.221  4.076  4.299  -1.016 0.601  O    IG8 3  
IG8 CB   C3  C 0 1 N N R N N N -1.199 3.887  4.196  1.876  -0.097 0.047  CB   IG8 4  
IG8 CG2  C4  C 0 1 N N N N N N -1.584 3.973  5.675  0.575  0.666  -0.211 CG2  IG8 5  
IG8 OG1  O2  O 0 1 N N N N N N -2.135 4.620  3.419  1.969  -1.199 -0.858 OG1  IG8 6  
IG8 CD   C5  C 0 1 N N N N N N -0.630 3.111  6.506  -0.618 -0.233 0.122  CD   IG8 7  
IG8 CE   C6  C 0 1 N N N N N N -1.386 2.506  7.690  -1.919 0.530  -0.136 CE   IG8 8  
IG8 CZ   C7  C 0 1 N N N N N N -0.467 1.542  8.444  -3.112 -0.369 0.197  CZ   IG8 9  
IG8 CH   C8  C 0 1 N N N N N N -1.292 0.378  8.997  -4.413 0.394  -0.061 CH   IG8 10 
IG8 CI   C9  C 0 1 N N N N N N -1.175 -1.766 10.275 -6.906 0.258  0.014  CI   IG8 11 
IG8 CT   C10 C 0 1 N N N N N N -0.402 -0.510 9.870  -5.605 -0.505 0.272  CT   IG8 12 
IG8 O1   O3  O 0 1 N Y N N N N 2.211  3.652  2.906  5.520  0.756  0.099  O1   IG8 13 
IG8 HA1  H1  H 0 1 N N N N N N 0.524  4.982  4.912  2.950  1.724  0.461  HA1  IG8 14 
IG8 HA2  H2  H 0 1 N N N N N N 0.178  5.197  3.162  3.111  1.139  -1.213 HA2  IG8 15 
IG8 HB   H3  H 0 1 N N N N N N -1.190 2.830  3.891  1.883  -0.467 1.072  HB   IG8 16 
IG8 HG21 H4  H 0 0 N N N N N N -1.518 5.019  6.010  0.545  1.556  0.417  HG21 IG8 17 
IG8 HG22 H5  H 0 0 N N N N N N -2.614 3.610  5.807  0.527  0.959  -1.260 HG22 IG8 18 
IG8 HG1  H6  H 0 1 N N N N N N -3.004 4.258  3.545  1.968  -0.944 -1.791 HG1  IG8 19 
IG8 HD1  H7  H 0 1 N N N N N N -0.225 2.303  5.878  -0.588 -1.123 -0.506 HD1  IG8 20 
IG8 HD2  H8  H 0 1 N N N N N N 0.196  3.734  6.879  -0.571 -0.526 1.171  HD2  IG8 21 
IG8 HE1  H9  H 0 1 N N N N N N -1.709 3.310  8.368  -1.949 1.420  0.492  HE1  IG8 22 
IG8 HE2  H10 H 0 1 N N N N N N -2.267 1.960  7.322  -1.967 0.823  -1.184 HE2  IG8 23 
IG8 HZ1  H11 H 0 1 N N N N N N 0.300  1.154  7.758  -3.082 -1.259 -0.431 HZ1  IG8 24 
IG8 HZ2  H12 H 0 1 N N N N N N 0.020  2.074  9.275  -3.064 -0.662 1.246  HZ2  IG8 25 
IG8 HH1  H13 H 0 1 N N N N N N -2.122 0.772  9.602  -4.442 1.284  0.567  HH1  IG8 26 
IG8 HH2  H14 H 0 1 N N N N N N -1.695 -0.215 8.162  -4.460 0.687  -1.109 HH2  IG8 27 
IG8 HI2  H15 H 0 1 N N N N N N -0.536 -2.404 10.902 -6.936 1.148  0.642  HI2  IG8 28 
IG8 HI3  H16 H 0 1 N N N N N N -2.073 -1.477 10.841 -6.954 0.551  -1.034 HI3  IG8 29 
IG8 HI1  H17 H 0 1 N N N N N N -1.473 -2.320 9.373  -7.756 -0.382 0.252  HI1  IG8 30 
IG8 HT1  H18 H 0 1 N N N N N N 0.496  -0.799 9.304  -5.576 -1.395 -0.356 HT1  IG8 31 
IG8 HT2  H19 H 0 1 N N N N N N -0.104 0.044  10.772 -5.558 -0.798 1.321  HT2  IG8 32 
IG8 H1   H20 H 0 1 N Y N N N N 2.744  2.877  2.770  6.309  0.257  0.349  H1   IG8 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IG8 OG1 CB   SING N N 1  
IG8 C   CA   SING N N 2  
IG8 C   O    DOUB N N 3  
IG8 CA  CB   SING N N 4  
IG8 CB  CG2  SING N N 5  
IG8 CG2 CD   SING N N 6  
IG8 CD  CE   SING N N 7  
IG8 CE  CZ   SING N N 8  
IG8 CZ  CH   SING N N 9  
IG8 CH  CT   SING N N 10 
IG8 CT  CI   SING N N 11 
IG8 C   O1   SING N N 12 
IG8 CA  HA1  SING N N 13 
IG8 CA  HA2  SING N N 14 
IG8 CB  HB   SING N N 15 
IG8 CG2 HG21 SING N N 16 
IG8 CG2 HG22 SING N N 17 
IG8 OG1 HG1  SING N N 18 
IG8 CD  HD1  SING N N 19 
IG8 CD  HD2  SING N N 20 
IG8 CE  HE1  SING N N 21 
IG8 CE  HE2  SING N N 22 
IG8 CZ  HZ1  SING N N 23 
IG8 CZ  HZ2  SING N N 24 
IG8 CH  HH1  SING N N 25 
IG8 CH  HH2  SING N N 26 
IG8 CI  HI2  SING N N 27 
IG8 CI  HI3  SING N N 28 
IG8 CI  HI1  SING N N 29 
IG8 CT  HT1  SING N N 30 
IG8 CT  HT2  SING N N 31 
IG8 O1  H1   SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IG8 InChI            InChI                1.06  "InChI=1S/C10H20O3/c1-2-3-4-5-6-7-9(11)8-10(12)13/h9,11H,2-8H2,1H3,(H,12,13)/t9-/m1/s1" 
IG8 InChIKey         InChI                1.06  FYSSBMZUBSBFJL-SECBINFHSA-N                                                             
IG8 SMILES_CANONICAL CACTVS               3.385 "CCCCCCC[C@@H](O)CC(O)=O"                                                               
IG8 SMILES           CACTVS               3.385 "CCCCCCC[CH](O)CC(O)=O"                                                                 
IG8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC[C@H](CC(=O)O)O"                                                                
IG8 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(CC(=O)O)O"                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           IG8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R})-3-oxidanyldecanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IG8 "Create component" 2023-08-01 PDBE 
IG8 "Modify backbone"  2023-11-03 PDBE 
IG8 "Initial release"  2024-08-14 RCSB 
IG8 "Modify backbone"  2024-09-26 PDBE 
IG8 "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 IG8 LEU None Lipid/lipid-like "Amino-acid backbone" N-terminal C N ? ? 
2 IG8 DLE None Lipid/lipid-like "Amino-acid backbone" N-terminal C N ? ? 
# 
