data_K28
#

_chem_comp.id                                   K28
_chem_comp.name                                 "[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 N11 O10 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       663.536
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K28
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RGF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K28  O3   O1   O  0  1  N  N  N  18.402   9.685  16.295  -4.196  -0.425   2.319  O3   K28   1  
K28  C4   C1   C  0  1  Y  N  N  18.355  11.480  12.800  -2.905  -0.026  -1.588  C4   K28   2  
K28  C5   C2   C  0  1  Y  N  N  20.206  12.419  12.302  -4.154  -1.648  -2.321  C5   K28   3  
K28  O4   O2   O  0  1  N  N  N  17.189   8.461  18.100  -2.250  -1.671   3.572  O4   K28   4  
K28  C6   C3   C  0  1  Y  N  N  21.270  13.207  11.809  -4.763  -2.741  -2.966  C6   K28   5  
K28  N1   N1   N  0  1  Y  N  N  18.828  12.559  12.206  -2.982  -0.994  -2.471  N1   K28   6  
K28  C7   C4   C  0  1  Y  N  N  22.706  11.620  12.684  -6.573  -2.523  -1.551  C7   K28   7  
K28  C8   C5   C  0  1  Y  N  N  20.555  11.255  12.970  -4.849  -1.031  -1.265  C8   K28   8  
K28  N2   N2   N  0  1  N  N  N  21.097  14.347  11.134  -4.128  -3.390  -4.010  N2   K28   9  
K28  C9   C6   C  0  1  N  N  R  19.227   9.369  13.993  -4.344   0.919   0.270  C9   K28  10  
K28  O5   O3   O  0  1  N  N  N  17.950  10.837  18.481  -4.639  -2.761   3.440  O5   K28  11  
K28  C10  C7   C  0  1  N  N  R  18.243   7.284  13.597  -3.752   2.963   1.184  C10  K28  12  
K28  O6   O4   O  0  1  N  N  N  16.052  10.360  16.889  -3.179  -2.542   1.393  O6   K28  13  
K28  C11  C8   C  0  1  N  N  N  17.053   6.996  12.710  -2.585   3.948   1.090  C11  K28  14  
K28  C12  C9   C  0  1  N  N  R  17.895   7.725  15.020  -3.468   1.917   2.280  C12  K28  15  
K28  N3   N3   N  0  1  Y  N  N  22.528  12.767  12.022  -5.960  -3.136  -2.547  N3   K28  16  
K28  C13  C10  C  0  1  N  N  R  18.056   9.241  14.964  -3.522   0.562   1.535  C13  K28  17  
K28  O7   O5   O  0  1  N  N  N  16.036   8.460   9.915   3.514   1.013  -0.882  O7   K28  18  
K28  C14  C11  C  0  1  N  N  N  14.013   9.641  10.531   2.497   2.974  -1.924  C14  K28  19  
K28  O8   O6   O  0  1  N  N  N  17.645  10.532   7.861   5.932   2.268   1.380  O8   K28  20  
K28  C15  C12  C  0  1  N  N  R  15.388   9.745   9.894   3.184   2.405  -0.681  C15  K28  21  
K28  N4   N4   N  0  1  Y  N  N  21.788  10.799  13.200  -6.043  -1.498  -0.918  N4   K28  22  
K28  N    N5   N  0  1  N  N  N  14.042   9.439  11.978   1.260   2.227  -2.186  N    K28  23  
K28  C    C13  C  0  1  N  N  N  12.806   8.820  12.461   0.773   2.475  -3.549  C    K28  24  
K28  O    O7   O  0  1  N  N  N  19.027   8.357  13.025  -3.897   2.252  -0.057  O    K28  25  
K28  C1   C14  C  0  1  N  N  N  14.364  10.635  12.755   0.228   2.553  -1.192  C1   K28  26  
K28  C16  C15  C  0  1  N  N  R  16.980   8.420   8.859   4.552   0.725   0.080  C16  K28  27  
K28  C17  C16  C  0  1  N  N  R  16.624   9.542   7.867   5.463   1.973   0.063  C17  K28  28  
K28  C18  C17  C  0  1  N  N  S  15.296  10.084   8.414   4.542   3.103  -0.449  C18  K28  29  
K28  C19  C18  C  0  1  Y  N  N  15.937   6.466   7.624   5.420  -0.956  -1.589  C19  K28  30  
K28  C2   C19  C  0  1  N  N  N  15.802  10.913  12.875  -0.903   1.622  -1.335  C2   K28  31  
K28  C20  C20  C  0  1  Y  N  N  17.541   5.072   7.578   6.562  -2.292  -0.319  C20  K28  32  
K28  C21  C21  C  0  1  Y  N  N  18.433   4.001   7.409   7.357  -3.286   0.278  C21  K28  33  
K28  C22  C22  C  0  1  Y  N  N  19.995   5.271   8.550   7.035  -2.266   2.324  C22  K28  34  
K28  C23  C23  C  0  1  Y  N  N  18.009   6.186   8.254   6.025  -1.288   0.505  C23  K28  35  
K28  C3   C24  C  0  1  N  N  N  16.976  11.152  12.867  -1.805   0.880  -1.449  C3   K28  36  
K28  N10  N6   N  0  1  Y  N  N  19.236   6.347   8.770   6.285  -1.315   1.808  N10  K28  37  
K28  N5   N7   N  0  1  Y  N  N  19.355  10.646  13.300  -4.044  -0.012  -0.821  N5   K28  38  
K28  N6   N8   N  0  1  Y  N  N  16.973   7.083   8.279   5.306  -0.465  -0.323  N6   K28  39  
K28  N7   N9   N  0  1  Y  N  N  16.220   5.265   7.184   6.158  -2.029  -1.584  N7   K28  40  
K28  N8   N10  N  0  1  N  N  N  18.126   2.868   6.770   7.913  -4.299  -0.483  N8   K28  41  
K28  N9   N11  N  0  1  Y  N  N  19.678   4.137   7.918   7.562  -3.230   1.590  N9   K28  42  
K28  O1   O8   O  0  1  N  N  N  15.952   7.847  13.006  -2.907   4.980   0.155  O1   K28  43  
K28  O2   O9   O  0  1  N  N  N  18.808   7.146  15.945  -4.473   1.971   3.295  O2   K28  44  
K28  O9   O10  O  0  1  N  N  N  15.189  11.490   8.225   4.415   4.131   0.535  O9   K28  45  
K28  P    P1   P  0  1  N  N  N  17.334   9.848  17.514  -3.557  -1.865   2.653  P    K28  46  
K28  H1   H1   H  0  1  N  N  N  16.300   8.152  17.968  -2.423  -1.233   4.416  H1   K28  47  
K28  H2   H2   H  0  1  N  N  N  23.733  11.315  12.820  -7.546  -2.878  -1.243  H2   K28  48  
K28  H3   H3   H  0  1  N  N  N  21.988  14.720  10.875  -4.558  -4.142  -4.446  H3   K28  49  
K28  H4   H4   H  0  1  N  N  N  20.559  14.168  10.310  -3.254  -3.092  -4.306  H4   K28  50  
K28  H5   H5   H  0  1  N  N  N  20.155   9.169  14.549  -5.411   0.916   0.493  H5   K28  51  
K28  H6   H6   H  0  1  N  N  N  17.410  11.618  18.523  -4.321  -3.644   3.675  H6   K28  52  
K28  H7   H7   H  0  1  N  N  N  18.860   6.375  13.659  -4.673   3.499   1.413  H7   K28  53  
K28  H8   H8   H  0  1  N  N  N  16.744   5.951  12.858  -2.403   4.390   2.070  H8   K28  54  
K28  H9   H9   H  0  1  N  N  N  17.347   7.147  11.661  -1.691   3.422   0.757  H9   K28  55  
K28  H10  H10  H  0  1  N  N  N  16.853   7.461  15.255  -2.481   2.078   2.713  H10  K28  56  
K28  H11  H11  H  0  1  N  N  N  17.151   9.730  14.573  -2.521   0.226   1.265  H11  K28  57  
K28  H12  H12  H  0  1  N  N  N  13.464  10.571  10.323   2.260   4.025  -1.759  H12  K28  58  
K28  H13  H13  H  0  1  N  N  N  13.483   8.792  10.074   3.165   2.883  -2.782  H13  K28  59  
K28  H14  H14  H  0  1  N  N  N  18.447  10.158   7.517   6.460   3.076   1.437  H14  K28  60  
K28  H15  H15  H  0  1  N  N  N  15.990  10.503  10.417   2.542   2.520   0.192  H15  K28  61  
K28  H17  H17  H  0  1  N  N  N  12.865   8.684  13.551   1.566   2.252  -4.264  H17  K28  62  
K28  H18  H18  H  0  1  N  N  N  11.952   9.469  12.218  -0.087   1.836  -3.750  H18  K28  63  
K28  H19  H19  H  0  1  N  N  N  12.672   7.842  11.976   0.480   3.520  -3.647  H19  K28  64  
K28  H20  H20  H  0  1  N  N  N  13.886  11.499  12.270   0.648   2.464  -0.190  H20  K28  65  
K28  H21  H21  H  0  1  N  N  N  13.953  10.509  13.767  -0.119   3.574  -1.350  H21  K28  66  
K28  H22  H22  H  0  1  N  N  N  17.984   8.629   9.258   4.122   0.583   1.071  H22  K28  67  
K28  H23  H23  H  0  1  N  N  N  16.469   9.117   6.864   6.302   1.826  -0.617  H23  K28  68  
K28  H24  H24  H  0  1  N  N  N  14.453   9.548   7.954   4.925   3.513  -1.384  H24  K28  69  
K28  H25  H25  H  0  1  N  N  N  14.972   6.930   7.483   4.962  -0.523  -2.466  H25  K28  70  
K28  H26  H26  H  0  1  N  N  N  21.003   5.324   8.935   7.228  -2.258   3.386  H26  K28  71  
K28  H27  H27  H  0  1  N  N  N  18.919   2.259   6.770   7.756  -4.330  -1.439  H27  K28  72  
K28  H28  H28  H  0  1  N  N  N  17.362   2.420   7.235   8.459  -4.980  -0.059  H28  K28  73  
K28  H29  H29  H  0  1  N  N  N  15.226   7.637  12.431  -2.211   5.642   0.045  H29  K28  74  
K28  H30  H30  H  0  1  N  N  N  18.586   7.424  16.826  -4.522   2.820   3.755  H30  K28  75  
K28  H31  H31  H  0  1  N  N  N  14.359  11.794   8.573   5.250   4.562   0.764  H31  K28  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K28  N8   C21  SING  N  N   1  
K28  N7   C20  SING  Y  N   2  
K28  N7   C19  DOUB  Y  N   3  
K28  C21  C20  DOUB  Y  N   4  
K28  C21  N9   SING  Y  N   5  
K28  C20  C23  SING  Y  N   6  
K28  C19  N6   SING  Y  N   7  
K28  O8   C17  SING  N  N   8  
K28  C17  C18  SING  N  N   9  
K28  C17  C16  SING  N  N  10  
K28  N9   C22  DOUB  Y  N  11  
K28  O9   C18  SING  N  N  12  
K28  C23  N6   SING  Y  N  13  
K28  C23  N10  DOUB  Y  N  14  
K28  N6   C16  SING  N  N  15  
K28  C18  C15  SING  N  N  16  
K28  C22  N10  SING  Y  N  17  
K28  C16  O7   SING  N  N  18  
K28  C15  O7   SING  N  N  19  
K28  C15  C14  SING  N  N  20  
K28  C14  N    SING  N  N  21  
K28  N2   C6   SING  N  N  22  
K28  C6   N3   DOUB  Y  N  23  
K28  C6   C5   SING  Y  N  24  
K28  N    C    SING  N  N  25  
K28  N    C1   SING  N  N  26  
K28  N3   C7   SING  Y  N  27  
K28  N1   C5   SING  Y  N  28  
K28  N1   C4   DOUB  Y  N  29  
K28  C5   C8   DOUB  Y  N  30  
K28  C7   N4   DOUB  Y  N  31  
K28  C11  O1   SING  N  N  32  
K28  C11  C10  SING  N  N  33  
K28  C1   C2   SING  N  N  34  
K28  C4   C3   SING  N  N  35  
K28  C4   N5   SING  Y  N  36  
K28  C3   C2   TRIP  N  N  37  
K28  C8   N4   SING  Y  N  38  
K28  C8   N5   SING  Y  N  39  
K28  O    C10  SING  N  N  40  
K28  O    C9   SING  N  N  41  
K28  N5   C9   SING  N  N  42  
K28  C10  C12  SING  N  N  43  
K28  C9   C13  SING  N  N  44  
K28  C13  C12  SING  N  N  45  
K28  C13  O3   SING  N  N  46  
K28  C12  O2   SING  N  N  47  
K28  O3   P    SING  N  N  48  
K28  O6   P    DOUB  N  N  49  
K28  P    O4   SING  N  N  50  
K28  P    O5   SING  N  N  51  
K28  O4   H1   SING  N  N  52  
K28  C7   H2   SING  N  N  53  
K28  N2   H3   SING  N  N  54  
K28  N2   H4   SING  N  N  55  
K28  C9   H5   SING  N  N  56  
K28  O5   H6   SING  N  N  57  
K28  C10  H7   SING  N  N  58  
K28  C11  H8   SING  N  N  59  
K28  C11  H9   SING  N  N  60  
K28  C12  H10  SING  N  N  61  
K28  C13  H11  SING  N  N  62  
K28  C14  H12  SING  N  N  63  
K28  C14  H13  SING  N  N  64  
K28  O8   H14  SING  N  N  65  
K28  C15  H15  SING  N  N  66  
K28  C    H17  SING  N  N  67  
K28  C    H18  SING  N  N  68  
K28  C    H19  SING  N  N  69  
K28  C1   H20  SING  N  N  70  
K28  C1   H21  SING  N  N  71  
K28  C16  H22  SING  N  N  72  
K28  C17  H23  SING  N  N  73  
K28  C18  H24  SING  N  N  74  
K28  C19  H25  SING  N  N  75  
K28  C22  H26  SING  N  N  76  
K28  N8   H27  SING  N  N  77  
K28  N8   H28  SING  N  N  78  
K28  O1   H29  SING  N  N  79  
K28  O2   H30  SING  N  N  80  
K28  O9   H31  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K28  InChI             InChI                 1.03   "InChI=1S/C24H30N11O10P/c1-33(5-10-15(37)17(39)23(43-10)34-9-31-13-19(25)27-7-29-21(13)34)4-2-3-12-32-14-20(26)28-8-30-22(14)35(12)24-18(45-46(40,41)42)16(38)11(6-36)44-24/h7-11,15-18,23-24,36-39H,4-6H2,1H3,(H2,25,27,29)(H2,26,28,30)(H2,40,41,42)/t10-,11-,15-,16-,17-,18-,23-,24-/m1/s1"  
K28  InChIKey          InChI                 1.03   LZWZGJMZXMPLGZ-KRSQEUQLSA-N  
K28  SMILES_CANONICAL  CACTVS                3.385  "CN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O[P](O)(O)=O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"  
K28  SMILES            CACTVS                3.385  "CN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CO)[CH](O)[CH]3O[P](O)(O)=O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"  
K28  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(CC#Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)OP(=O)(O)O)N)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O"  
K28  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(CC#Cc1nc2c(ncnc2n1C3C(C(C(O3)CO)O)OP(=O)(O)O)N)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K28
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-methyl-amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K28  "Create component"  2019-04-16  RCSB  
K28  "Initial release"   2020-05-13  RCSB  
##
