data_LA8
#

_chem_comp.id                                   LA8
_chem_comp.name                                 "L-ADENOSINE-5'-DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N5 O10 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        L-ADP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-03-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       427.201
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LA8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YBE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LA8  N1      N1      N  0  1  Y  N  N  -11.081  -18.250  23.234  -6.943   1.327  -0.881  N1      LA8   1  
LA8  C2      C2      C  0  1  Y  N  N  -10.981  -17.229  22.389  -6.404   0.343  -1.578  C2      LA8   2  
LA8  N3      N3      N  0  1  Y  N  N  -10.940  -15.948  22.778  -5.185  -0.098  -1.351  N3      LA8   3  
LA8  C4      C4      C  0  1  Y  N  N  -11.042  -15.648  24.070  -4.436   0.441  -0.395  C4      LA8   4  
LA8  C5      C5      C  0  1  Y  N  N  -11.147  -16.682  24.996  -4.964   1.491   0.375  C5      LA8   5  
LA8  C6      C6      C  0  1  Y  N  N  -11.155  -17.989  24.548  -6.270   1.927   0.095  C6      LA8   6  
LA8  N6      N6      N  0  1  N  N  N  -11.207  -18.962  25.454  -6.843   2.958   0.820  N6      LA8   7  
LA8  N7      N7      N  0  1  Y  N  N  -11.155  -16.145  26.213  -4.009   1.852   1.265  N7      LA8   8  
LA8  C8      C8      C  0  1  Y  N  N  -11.118  -14.766  26.046  -2.955   1.108   1.095  C8      LA8   9  
LA8  N9      N9      N  0  1  Y  N  N  -11.045  -14.465  24.728  -3.169   0.222   0.083  N9      LA8  10  
LA8  PA      PA      P  0  1  N  N  N   -5.704  -11.372  22.137   3.523  -0.214   0.623  PA      LA8  11  
LA8  PB      PB      P  0  1  N  N  N   -5.096   -8.774  21.992   5.840   1.111  -0.665  PB      LA8  12  
LA8  "C1'"   "C1'"   C  0  1  N  N  S  -10.981  -13.075  24.049  -2.219  -0.781  -0.407  "C1'"   LA8  13  
LA8  O1A     O1A     O  0  1  N  N  N   -5.616  -11.454  20.423   4.304  -1.452   0.838  O1A     LA8  14  
LA8  O1B     O1B     O  0  1  N  N  N   -3.467   -8.532  21.844   6.320   2.141   0.476  O1B     LA8  15  
LA8  "C2'"   "C2'"   C  0  1  N  N  R  -10.704  -12.848  21.611  -1.030  -2.706   0.495  "C2'"   LA8  16  
LA8  "O2'"   "O2'"   O  0  1  N  N  N  -11.250  -11.923  20.661  -0.891  -3.947  -0.202  "O2'"   LA8  17  
LA8  O2A     O2A     O  0  1  N  N  N   -5.188  -12.583  22.798   3.355   0.564   2.022  O2A     LA8  18  
LA8  O2B     O2B     O  0  1  N  N  N   -5.819   -8.707  20.659   6.665  -0.116  -0.601  O2B     LA8  19  
LA8  "C3'"   "C3'"   C  0  1  N  N  S  -11.757  -13.050  22.719  -2.452  -2.133   0.303  "C3'"   LA8  20  
LA8  "O3'"   "O3'"   O  0  1  N  N  N  -12.561  -11.846  22.731  -3.236  -3.002  -0.517  "O3'"   LA8  21  
LA8  O3A     O3A     O  0  1  N  N  N   -5.110  -10.113  22.778   4.293   0.731  -0.428  O3A     LA8  22  
LA8  O3B     O3B     O  0  1  N  N  N   -5.449   -7.562  22.937   6.009   1.796  -2.112  O3B     LA8  23  
LA8  "C4'"   "C4'"   C  0  1  N  N  S   -9.660  -12.075  22.374  -0.105  -1.631  -0.125  "C4'"   LA8  24  
LA8  "O4'"   "O4'"   O  0  1  N  N  N   -9.635  -12.767  23.680  -0.869  -0.407  -0.059  "O4'"   LA8  25  
LA8  "C5'"   "C5'"   C  0  1  N  N  N   -8.272  -12.205  21.781   1.182  -1.501   0.692  "C5'"   LA8  26  
LA8  "O5'"   "O5'"   O  0  1  N  N  N   -7.345  -11.282  22.473   2.069  -0.590   0.041  "O5'"   LA8  27  
LA8  H2      H2      H  0  1  N  N  N  -10.930  -17.444  21.332  -6.986  -0.117  -2.362  H2      LA8  28  
LA8  HN6     HN6     H  0  1  N  N  N  -11.220  -19.848  24.991  -7.745   3.250   0.617  HN6     LA8  29  
LA8  HN6A    HN6A    H  0  0  N  N  N  -10.404  -18.908  26.048  -6.341   3.388   1.530  HN6A    LA8  30  
LA8  H8      H8      H  0  1  N  N  N  -11.144  -14.043  26.848  -2.044   1.183   1.672  H8      LA8  31  
LA8  "H1'"   "H1'"   H  0  1  N  N  N  -11.403  -12.366  24.776  -2.315  -0.898  -1.486  "H1'"   LA8  32  
LA8  HO1B    HO1B    H  0  0  N  N  N   -3.236   -8.486  20.924   5.822   2.970   0.492  HO1B    LA8  33  
LA8  "H2'"   "H2'"   H  0  1  N  N  N  -10.372  -13.768  21.107  -0.809  -2.836   1.554  "H2'"   LA8  34  
LA8  "HO2'"  "HO2'"  H  0  0  N  N  N  -11.371  -11.077  21.076  -1.449  -4.657   0.145  "HO2'"  LA8  35  
LA8  HO2A    HO2A    H  0  0  N  N  N   -5.077  -13.273  22.154   2.852   1.388   1.957  HO2A    LA8  36  
LA8  "H3'"   "H3'"   H  0  1  N  N  N  -12.362  -13.957  22.572  -2.935  -1.980   1.268  "H3'"   LA8  37  
LA8  "HO3'"  "HO3'"  H  0  0  N  N  N  -12.737  -11.591  23.629  -3.362  -3.886  -0.147  "HO3'"  LA8  38  
LA8  HO3B    HO3B    H  0  0  N  N  N   -5.520   -7.869  23.833   6.917   2.052  -2.323  HO3B    LA8  39  
LA8  "H4'"   "H4'"   H  0  1  N  N  N   -9.901  -11.002  22.388   0.125  -1.879  -1.161  "H4'"   LA8  40  
LA8  "H5'"   "H5'"   H  0  1  N  N  N   -7.918  -13.239  21.904   0.944  -1.128   1.688  "H5'"   LA8  41  
LA8  "H5'A"  "H5'A"  H  0  0  N  N  N   -8.308  -11.951  20.711   1.660  -2.477   0.775  "H5'A"  LA8  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LA8  C2     N1      DOUB  Y  N   1  
LA8  N1     C6      SING  Y  N   2  
LA8  C2     N3      SING  Y  N   3  
LA8  C2     H2      SING  N  N   4  
LA8  N3     C4      DOUB  Y  N   5  
LA8  C4     N9      SING  Y  N   6  
LA8  C4     C5      SING  Y  N   7  
LA8  C6     C5      DOUB  Y  N   8  
LA8  C5     N7      SING  Y  N   9  
LA8  C6     N6      SING  N  N  10  
LA8  N6     HN6     SING  N  N  11  
LA8  N6     HN6A    SING  N  N  12  
LA8  C8     N7      DOUB  Y  N  13  
LA8  N9     C8      SING  Y  N  14  
LA8  C8     H8      SING  N  N  15  
LA8  "C1'"  N9      SING  N  N  16  
LA8  O1A    PA      DOUB  N  N  17  
LA8  PA     "O5'"   SING  N  N  18  
LA8  PA     O3A     SING  N  N  19  
LA8  PA     O2A     SING  N  N  20  
LA8  O2B    PB      DOUB  N  N  21  
LA8  O1B    PB      SING  N  N  22  
LA8  PB     O3A     SING  N  N  23  
LA8  PB     O3B     SING  N  N  24  
LA8  "C3'"  "C1'"   SING  N  N  25  
LA8  "O4'"  "C1'"   SING  N  N  26  
LA8  "C1'"  "H1'"   SING  N  N  27  
LA8  O1B    HO1B    SING  N  N  28  
LA8  "O2'"  "C2'"   SING  N  N  29  
LA8  "C2'"  "C4'"   SING  N  N  30  
LA8  "C2'"  "C3'"   SING  N  N  31  
LA8  "C2'"  "H2'"   SING  N  N  32  
LA8  "O2'"  "HO2'"  SING  N  N  33  
LA8  O2A    HO2A    SING  N  N  34  
LA8  "C3'"  "O3'"   SING  N  N  35  
LA8  "C3'"  "H3'"   SING  N  N  36  
LA8  "O3'"  "HO3'"  SING  N  N  37  
LA8  O3B    HO3B    SING  N  N  38  
LA8  "C5'"  "C4'"   SING  N  N  39  
LA8  "C4'"  "O4'"   SING  N  N  40  
LA8  "C4'"  "H4'"   SING  N  N  41  
LA8  "C5'"  "O5'"   SING  N  N  42  
LA8  "C5'"  "H5'"   SING  N  N  43  
LA8  "C5'"  "H5'A"  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LA8  SMILES            ACDLabs               12.01  "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
LA8  SMILES_CANONICAL  CACTVS                3.352  "Nc1ncnc2n(cnc12)[C@H]3O[C@@H](CO[P](O)(=O)O[P](O)(O)=O)[C@H](O)[C@@H]3O"  
LA8  SMILES            CACTVS                3.352  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"  
LA8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "c1nc(c2c(n1)n(cn2)[C@@H]3[C@H]([C@H]([C@@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N"  
LA8  SMILES            "OpenEye OEToolkits"  1.6.1  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N"  
LA8  InChI             InChI                 1.03   "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m0/s1"  
LA8  InChIKey          InChI                 1.03   XTWYTFMLZFPYCI-DEGSGYPDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LA8  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-{5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-beta-L-ribofuranosyl}-9H-purin-6-amine"  
LA8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[(2S,3R,4S,5S)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LA8  "Create component"      2011-03-08  EBI   
LA8  "Modify aromatic_flag"  2011-06-04  RCSB  
LA8  "Modify descriptor"     2011-06-04  RCSB  
LA8  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LA8
_pdbx_chem_comp_synonyms.name        L-ADP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
