data_M88
# 
_chem_comp.id                                    M88 
_chem_comp.name                                  "1-(8Z-hexadecenoyl)-sn-glycerol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H36 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2,3-dihydroxypropyl (Z)-hexadec-8-enoate; [(2S)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-8-enoate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-03 
_chem_comp.pdbx_modified_date                    2023-09-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        328.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M88 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SSS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M88 C07  C1  C 0 1 N N N 32.121 18.383 -42.369 -5.063  -1.318 0.665  C07  M88 1  
M88 C08  C2  C 0 1 N N N 31.035 17.341 -42.533 -4.703  -2.763 0.434  C08  M88 2  
M88 C09  C3  C 0 1 N N N 30.927 16.302 -41.675 -3.606  -3.070 -0.212 C09  M88 3  
M88 C10  C4  C 0 1 N N N 31.886 16.128 -40.517 -2.619  -1.991 -0.576 C10  M88 4  
M88 C11  C5  C 0 1 N N N 31.274 15.226 -39.461 -1.232  -2.373 -0.056 C11  M88 5  
M88 C12  C6  C 0 1 N N N 32.115 15.181 -38.195 -0.229  -1.278 -0.424 C12  M88 6  
M88 C13  C7  C 0 1 N N N 31.310 14.970 -36.925 1.158   -1.660 0.095  C13  M88 7  
M88 C14  C8  C 0 1 N N N 31.674 15.926 -35.802 2.161   -0.564 -0.273 C14  M88 8  
M88 C15  C9  C 0 1 N N N 31.543 15.253 -34.447 3.548   -0.946 0.247  C15  M88 9  
M88 C16  C10 C 0 1 N N N 31.379 16.164 -33.240 4.535   0.133  -0.117 C16  M88 10 
M88 O17  O1  O 0 1 N N N 31.628 17.354 -33.299 4.167   1.107  -0.729 O17  M88 11 
M88 O18  O2  O 0 1 N N N 30.948 15.588 -32.028 5.824   0.011  0.240  O18  M88 12 
M88 C19  C11 C 0 1 N N N 29.712 16.054 -31.530 6.718   1.089  -0.144 C19  M88 13 
M88 C20  C12 C 0 1 N N S 28.800 14.858 -31.341 8.133   0.775  0.345  C20  M88 14 
M88 O21  O3  O 0 1 N N N 29.578 13.777 -30.884 8.625   -0.383 -0.331 O21  M88 15 
M88 C22  C13 C 0 1 N N N 27.698 15.071 -30.326 9.050   1.965  0.052  C22  M88 16 
M88 O23  O4  O 0 1 N N N 26.648 14.182 -30.643 10.342  1.720  0.611  O23  M88 17 
M88 H2   H1  H 0 1 N N N 33.182 18.100 -42.430 -4.994  -1.092 1.729  H2   M88 18 
M88 H1   H2  H 0 1 N N N 31.988 19.398 -42.772 -4.373  -0.680 0.113  H1   M88 19 
M88 H081 H4  H 0 0 N N N 30.334 17.429 -43.350 -5.351  -3.546 0.801  H081 M88 20 
M88 H091 H5  H 0 0 N N N 30.138 15.579 -41.819 -3.409  -4.097 -0.484 H091 M88 21 
M88 H101 H6  H 0 0 N N N 32.820 15.677 -40.883 -2.583  -1.882 -1.659 H101 M88 22 
M88 H102 H7  H 0 0 N N N 32.103 17.111 -40.074 -2.929  -1.048 -0.125 H102 M88 23 
M88 H112 H8  H 0 0 N N N 30.272 15.603 -39.209 -1.267  -2.483 1.028  H112 M88 24 
M88 H111 H9  H 0 0 N N N 31.190 14.208 -39.869 -0.922  -3.316 -0.506 H111 M88 25 
M88 H122 H10 H 0 0 N N N 32.836 14.356 -38.288 -0.193  -1.168 -1.508 H122 M88 26 
M88 H121 H11 H 0 0 N N N 32.657 16.134 -38.106 -0.539  -0.335 0.026  H121 M88 27 
M88 H131 H12 H 0 0 N N N 30.245 15.105 -37.163 1.122   -1.769 1.179  H131 M88 28 
M88 H132 H13 H 0 0 N N N 31.480 13.942 -36.574 1.468   -2.603 -0.355 H132 M88 29 
M88 H142 H14 H 0 0 N N N 32.713 16.261 -35.938 2.196   -0.454 -1.357 H142 M88 30 
M88 H141 H15 H 0 0 N N N 31.001 16.795 -35.838 1.850   0.379  0.177  H141 M88 31 
M88 H151 H16 H 0 0 N N N 30.664 14.593 -34.487 3.512   -1.056 1.330  H151 M88 32 
M88 H152 H17 H 0 0 N N N 32.448 14.649 -34.287 3.858   -1.889 -0.204 H152 M88 33 
M88 H192 H18 H 0 0 N N N 29.866 16.562 -30.566 6.722   1.188  -1.230 H192 M88 34 
M88 H191 H19 H 0 0 N N N 29.262 16.757 -32.247 6.377   2.022  0.305  H191 M88 35 
M88 H201 H20 H 0 0 N N N 28.342 14.610 -32.310 8.114   0.588  1.419  H201 M88 36 
M88 H211 H21 H 0 0 N N N 29.022 13.017 -30.760 8.670   -0.288 -1.293 H211 M88 37 
M88 H222 H22 H 0 0 N N N 28.074 14.861 -29.314 9.140   2.097  -1.027 H222 M88 38 
M88 H221 H23 H 0 0 N N N 27.338 16.109 -30.375 8.627   2.867  0.494  H221 M88 39 
M88 H231 H24 H 0 0 N N N 25.939 14.293 -30.020 10.976  2.435  0.463  H231 M88 40 
M88 C06  C06 C 0 1 N N N ?      ?      ?       -6.492  -1.064 0.181  C06  M88 41 
M88 C05  C05 C 0 1 N N N ?      ?      ?       -6.856  0.403  0.415  C05  M88 42 
M88 C04  C04 C 0 1 N N N ?      ?      ?       -8.285  0.657  -0.069 C04  M88 43 
M88 C03  C03 C 0 1 N N N ?      ?      ?       -8.650  2.125  0.165  C03  M88 44 
M88 C02  C02 C 0 1 N N N ?      ?      ?       -10.079 2.379  -0.319 C02  M88 45 
M88 C01  C01 C 0 1 N N N ?      ?      ?       -10.443 3.846  -0.085 C01  M88 46 
M88 H3   H3  H 0 1 N N N ?      ?      ?       -6.560  -1.290 -0.883 H3   M88 47 
M88 H4   H25 H 0 1 N N N ?      ?      ?       -7.181  -1.702 0.733  H4   M88 48 
M88 H5   H26 H 0 1 N N N ?      ?      ?       -6.788  0.629  1.479  H5   M88 49 
M88 H6   H27 H 0 1 N N N ?      ?      ?       -6.167  1.042  -0.137 H6   M88 50 
M88 H7   H28 H 0 1 N N N ?      ?      ?       -8.354  0.432  -1.133 H7   M88 51 
M88 H8   H29 H 0 1 N N N ?      ?      ?       -8.975  0.019  0.483  H8   M88 52 
M88 H9   H30 H 0 1 N N N ?      ?      ?       -8.581  2.350  1.230  H9   M88 53 
M88 H10  H31 H 0 1 N N N ?      ?      ?       -7.960  2.763  -0.387 H10  M88 54 
M88 H11  H32 H 0 1 N N N ?      ?      ?       -10.147 2.153  -1.383 H11  M88 55 
M88 H12  H33 H 0 1 N N N ?      ?      ?       -10.768 1.740  0.233  H12  M88 56 
M88 H13  H34 H 0 1 N N N ?      ?      ?       -9.754  4.484  -0.637 H13  M88 57 
M88 H14  H35 H 0 1 N N N ?      ?      ?       -11.461 4.027  -0.430 H14  M88 58 
M88 H15  H36 H 0 1 N N N ?      ?      ?       -10.375 4.072  0.980  H15  M88 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M88 C08 C07  SING N N 1  
M88 C08 C09  DOUB N Z 2  
M88 C09 C10  SING N N 3  
M88 C10 C11  SING N N 4  
M88 C11 C12  SING N N 5  
M88 C12 C13  SING N N 6  
M88 C13 C14  SING N N 7  
M88 C14 C15  SING N N 8  
M88 C15 C16  SING N N 9  
M88 O17 C16  DOUB N N 10 
M88 C16 O18  SING N N 11 
M88 O18 C19  SING N N 12 
M88 C19 C20  SING N N 13 
M88 C20 O21  SING N N 14 
M88 C20 C22  SING N N 15 
M88 O23 C22  SING N N 16 
M88 C07 H2   SING N N 17 
M88 C07 H1   SING N N 18 
M88 C08 H081 SING N N 19 
M88 C09 H091 SING N N 20 
M88 C10 H101 SING N N 21 
M88 C10 H102 SING N N 22 
M88 C11 H112 SING N N 23 
M88 C11 H111 SING N N 24 
M88 C12 H122 SING N N 25 
M88 C12 H121 SING N N 26 
M88 C13 H131 SING N N 27 
M88 C13 H132 SING N N 28 
M88 C14 H142 SING N N 29 
M88 C14 H141 SING N N 30 
M88 C15 H151 SING N N 31 
M88 C15 H152 SING N N 32 
M88 C19 H192 SING N N 33 
M88 C19 H191 SING N N 34 
M88 C20 H201 SING N N 35 
M88 O21 H211 SING N N 36 
M88 C22 H222 SING N N 37 
M88 C22 H221 SING N N 38 
M88 O23 H231 SING N N 39 
M88 C07 C06  SING N N 40 
M88 C06 C05  SING N N 41 
M88 C05 C04  SING N N 42 
M88 C04 C03  SING N N 43 
M88 C03 C02  SING N N 44 
M88 C02 C01  SING N N 45 
M88 C06 H3   SING N N 46 
M88 C06 H4   SING N N 47 
M88 C05 H5   SING N N 48 
M88 C05 H6   SING N N 49 
M88 C04 H7   SING N N 50 
M88 C04 H8   SING N N 51 
M88 C03 H9   SING N N 52 
M88 C03 H10  SING N N 53 
M88 C02 H11  SING N N 54 
M88 C02 H12  SING N N 55 
M88 C01 H13  SING N N 56 
M88 C01 H14  SING N N 57 
M88 C01 H15  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M88 InChI            InChI                1.06  "InChI=1S/C19H36O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(22)23-17-18(21)16-20/h8-9,18,20-21H,2-7,10-17H2,1H3/b9-8-/t18-/m0/s1" 
M88 InChIKey         InChI                1.06  CRXZGWVXXGFOLB-GIFJBRJJSA-N                                                                                                      
M88 SMILES_CANONICAL CACTVS               3.385 "CCCCCCC\C=C/CCCCCCC(=O)OC[C@@H](O)CO"                                                                                           
M88 SMILES           CACTVS               3.385 "CCCCCCCC=CCCCCCCC(=O)OC[CH](O)CO"                                                                                               
M88 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC/C=C\CCCCCCC(=O)OC[C@H](CO)O"                                                                                            
M88 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCC=CCCCCCCC(=O)OCC(CO)O"                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           M88 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-2,3-bis(oxidanyl)propyl] (~{Z})-hexadec-8-enoate" 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 M88 "2,3-dihydroxypropyl (Z)-hexadec-8-enoate"            PUBCHEM ? 
2 M88 "[(2S)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-8-enoate" PUBCHEM ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M88 "Create component"              2018-01-03 EBI  
M88 "Initial release"               2021-02-03 RCSB 
M88 "Modify name"                   2023-09-16 PDBE 
M88 "Modify synonyms"               2023-09-16 PDBE 
M88 "Modify model coordinates code" 2023-09-16 PDBE 
# 
