data_S78
#

_chem_comp.id                                   S78
_chem_comp.name                                 "2-((1-benzyl-1H-indol-4-yl)oxy)-N-((1-(tert-butoxycarbonyl)piperidin-3-yl)methyl)ethan-1-aminium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H38 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-11-10
_chem_comp.pdbx_modified_date                   2021-09-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       464.620
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S78
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AWI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S78  C10  C1   C  0  1  N  N  N  23.640  40.984  43.245  -6.512   1.220   0.244  C10  S78   1  
S78  C13  C2   C  0  1  N  N  N  21.184  42.814  40.891  -3.310   3.353   0.070  C13  S78   2  
S78  C15  C3   C  0  1  N  N  N  20.426  42.523  38.437  -1.097   4.258   0.267  C15  S78   3  
S78  C20  C4   C  0  1  Y  N  N  16.768  39.850  40.857   2.346   0.772  -1.807  C20  S78   4  
S78  C21  C5   C  0  1  Y  N  N  15.735  39.442  41.693   3.375  -0.020  -2.144  C21  S78   5  
S78  C24  C6   C  0  1  Y  N  N  13.427  40.705  43.566   5.738  -1.632  -0.417  C24  S78   6  
S78  C26  C7   C  0  1  Y  N  N  13.934  40.621  45.923   6.167  -2.509   1.769  C26  S78   7  
S78  C28  C8   C  0  1  Y  N  N  13.223  42.691  44.951   5.320  -3.943   0.049  C28  S78   8  
S78  C01  C9   C  0  1  N  N  N  19.903  36.634  40.090  -3.717  -3.619   1.619  C01  S78   9  
S78  C02  C10  C  0  1  N  N  N  21.386  37.106  40.225  -4.451  -3.709   0.279  C02  S78  10  
S78  C03  C11  C  0  1  N  N  N  22.245  35.864  40.364  -3.465  -4.123  -0.815  C03  S78  11  
S78  C04  C12  C  0  1  N  N  N  21.775  37.938  38.978  -5.569  -4.749   0.378  C04  S78  12  
S78  C06  C13  C  0  1  N  N  N  20.974  39.131  41.418  -4.165  -1.383  -0.173  C06  S78  13  
S78  C09  C14  C  0  1  N  N  N  22.697  39.742  43.170  -6.067   0.075  -0.671  C09  S78  14  
S78  C11  C15  C  0  1  N  N  N  22.811  42.289  42.824  -5.638   2.448  -0.018  C11  S78  15  
S78  C12  C16  C  0  1  N  N  R  22.497  42.230  41.299  -4.179   2.115   0.301  C12  S78  16  
S78  C16  C17  C  0  1  N  N  N  18.900  42.609  38.019   0.339   3.962   0.704  C16  S78  17  
S78  C18  C18  C  0  1  Y  N  N  16.866  41.748  39.063   2.172   2.566   0.118  C18  S78  18  
S78  C19  C19  C  0  1  Y  N  N  16.292  40.937  40.064   2.783   1.579  -0.665  C19  S78  19  
S78  C23  C20  C  0  1  N  N  N  13.340  40.064  42.213   5.728  -0.472  -1.380  C23  S78  20  
S78  C25  C21  C  0  1  Y  N  N  13.837  39.986  44.679   6.163  -1.446   0.885  C25  S78  21  
S78  C27  C22  C  0  1  Y  N  N  13.627  41.966  46.066   5.744  -3.757   1.351  C27  S78  22  
S78  C29  C23  C  0  1  Y  N  N  13.131  42.065  43.711   5.317  -2.881  -0.835  C29  S78  23  
S78  C30  C24  C  0  1  Y  N  N  14.920  41.171  40.467   4.105   1.188  -0.395  C30  S78  24  
S78  C31  C25  C  0  1  Y  N  N  14.145  42.178  39.882   4.797   1.790   0.652  C31  S78  25  
S78  C32  C26  C  0  1  Y  N  N  14.741  42.947  38.907   4.185   2.760   1.415  C32  S78  26  
S78  C33  C27  C  0  1  Y  N  N  16.091  42.749  38.490   2.879   3.149   1.152  C33  S78  27  
S78  C34  C28  C  0  1  N  N  N  22.426  40.833  40.981  -3.706   0.981  -0.615  C34  S78  28  
S78  N08  N1   N  0  1  N  N  N  21.703  40.094  42.085  -4.629  -0.155  -0.475  N08  S78  29  
S78  N14  N2   N  1  1  N  N  N  20.579  41.903  39.801  -1.931   3.069   0.489  N14  S78  30  
S78  N22  N3   N  0  1  Y  N  N  14.593  40.235  41.461   4.435   0.211  -1.308  N22  S78  31  
S78  O05  O1   O  0  1  N  N  N  21.470  37.887  41.420  -5.021  -2.415  -0.048  O05  S78  32  
S78  O07  O2   O  0  1  N  N  N  20.000  39.508  40.789  -2.973  -1.560  -0.013  O07  S78  33  
S78  O17  O3   O  0  1  N  N  N  18.198  41.518  38.652   0.894   2.949  -0.138  O17  S78  34  
S78  H1   H1   H  0  1  N  N  N  24.487  40.847  42.557  -7.555   1.465   0.039  H1   S78  35  
S78  H2   H2   H  0  1  N  N  N  24.016  41.101  44.272  -6.408   0.915   1.285  H2   S78  36  
S78  H3   H3   H  0  1  N  N  N  21.334  43.828  40.491  -3.322   3.613  -0.989  H3   S78  37  
S78  H4   H4   H  0  1  N  N  N  20.509  42.859  41.758  -3.703   4.187   0.652  H4   S78  38  
S78  H5   H5   H  0  1  N  N  N  20.966  41.910  37.701  -1.490   5.091   0.850  H5   S78  39  
S78  H6   H6   H  0  1  N  N  N  20.852  43.537  38.453  -1.109   4.517  -0.791  H6   S78  40  
S78  H7   H7   H  0  1  N  N  N  17.758  39.420  40.815   1.380   0.810  -2.288  H7   S78  41  
S78  H8   H8   H  0  1  N  N  N  15.798  38.639  42.412   3.369  -0.734  -2.955  H8   S78  42  
S78  H9   H9   H  0  1  N  N  N  14.253  40.054  46.785   6.498  -2.364   2.787  H9   S78  43  
S78  H10  H10  H  0  1  N  N  N  12.981  43.739  45.047   4.990  -4.918  -0.277  H10  S78  44  
S78  H11  H11  H  0  1  N  N  N  19.624  36.043  40.975  -2.921  -2.879   1.548  H11  S78  45  
S78  H12  H12  H  0  1  N  N  N  19.245  37.512  40.013  -4.420  -3.324   2.398  H12  S78  46  
S78  H13  H13  H  0  1  N  N  N  19.796  36.015  39.187  -3.289  -4.591   1.865  H13  S78  47  
S78  H14  H14  H  0  1  N  N  N  21.937  35.303  41.259  -3.037  -5.095  -0.570  H14  S78  48  
S78  H15  H15  H  0  1  N  N  N  22.120  35.230  39.473  -3.987  -4.187  -1.770  H15  S78  49  
S78  H16  H16  H  0  1  N  N  N  23.301  36.157  40.460  -2.668  -3.383  -0.886  H16  S78  50  
S78  H17  H17  H  0  1  N  N  N  22.819  38.272  39.070  -6.271  -4.454   1.158  H17  S78  51  
S78  H18  H18  H  0  1  N  N  N  21.667  37.318  38.076  -6.091  -4.813  -0.576  H18  S78  52  
S78  H19  H19  H  0  1  N  N  N  21.115  38.815  38.902  -5.141  -5.721   0.624  H19  S78  53  
S78  H20  H20  H  0  1  N  N  N  22.185  39.582  44.131  -6.619  -0.830  -0.420  H20  S78  54  
S78  H21  H21  H  0  1  N  N  N  23.263  38.838  42.902  -6.258   0.343  -1.711  H21  S78  55  
S78  H22  H22  H  0  1  N  N  N  23.406  43.188  43.042  -5.724   2.738  -1.065  H22  S78  56  
S78  H23  H23  H  0  1  N  N  N  21.870  42.325  43.392  -5.969   3.272   0.615  H23  S78  57  
S78  H24  H24  H  0  1  N  N  N  23.313  42.716  40.744  -4.096   1.802   1.341  H24  S78  58  
S78  H25  H25  H  0  1  N  N  N  18.476  43.568  38.352   0.938   4.869   0.623  H25  S78  59  
S78  H26  H26  H  0  1  N  N  N  18.808  42.527  36.926   0.341   3.617   1.738  H26  S78  60  
S78  H27  H27  H  0  1  N  N  N  12.517  40.527  41.649   6.523   0.226  -1.115  H27  S78  61  
S78  H28  H28  H  0  1  N  N  N  13.140  38.989  42.337   5.890  -0.840  -2.393  H28  S78  62  
S78  H29  H29  H  0  1  N  N  N  14.081  38.938  44.586   6.493  -0.471   1.211  H29  S78  63  
S78  H30  H30  H  0  1  N  N  N  13.701  42.444  47.032   5.746  -4.587   2.042  H30  S78  64  
S78  H31  H31  H  0  1  N  N  N  12.826  42.638  42.848   4.984  -3.026  -1.852  H31  S78  65  
S78  H32  H32  H  0  1  N  N  N  13.121  42.346  40.183   5.814   1.496   0.868  H32  S78  66  
S78  H33  H33  H  0  1  N  N  N  14.164  43.731  38.440   4.727   3.222   2.227  H33  S78  67  
S78  H34  H34  H  0  1  N  N  N  16.514  43.382  37.723   2.413   3.912   1.759  H34  S78  68  
S78  H35  H35  H  0  1  N  N  N  21.881  40.701  40.035  -3.702   1.324  -1.649  H35  S78  69  
S78  H36  H36  H  0  1  N  N  N  23.444  40.430  40.877  -2.701   0.673  -0.326  H36  S78  70  
S78  H37  H37  H  0  1  N  N  N  19.673  41.615  40.110  -1.920   2.829   1.469  H37  S78  71  
S78  H38  H38  H  0  1  N  N  N  21.170  41.101  39.709  -1.567   2.298  -0.051  H38  S78  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S78  C16  C15  SING  N  N   1  
S78  C16  O17  SING  N  N   2  
S78  C15  N14  SING  N  N   3  
S78  C33  C32  DOUB  Y  N   4  
S78  C33  C18  SING  Y  N   5  
S78  O17  C18  SING  N  N   6  
S78  C32  C31  SING  Y  N   7  
S78  C04  C02  SING  N  N   8  
S78  C18  C19  DOUB  Y  N   9  
S78  N14  C13  SING  N  N  10  
S78  C31  C30  DOUB  Y  N  11  
S78  C19  C30  SING  Y  N  12  
S78  C19  C20  SING  Y  N  13  
S78  C01  C02  SING  N  N  14  
S78  C02  C03  SING  N  N  15  
S78  C02  O05  SING  N  N  16  
S78  C30  N22  SING  Y  N  17  
S78  O07  C06  DOUB  N  N  18  
S78  C20  C21  DOUB  Y  N  19  
S78  C13  C12  SING  N  N  20  
S78  C34  C12  SING  N  N  21  
S78  C34  N08  SING  N  N  22  
S78  C12  C11  SING  N  N  23  
S78  C06  O05  SING  N  N  24  
S78  C06  N08  SING  N  N  25  
S78  N22  C21  SING  Y  N  26  
S78  N22  C23  SING  N  N  27  
S78  N08  C09  SING  N  N  28  
S78  C23  C24  SING  N  N  29  
S78  C11  C10  SING  N  N  30  
S78  C09  C10  SING  N  N  31  
S78  C24  C29  DOUB  Y  N  32  
S78  C24  C25  SING  Y  N  33  
S78  C29  C28  SING  Y  N  34  
S78  C25  C26  DOUB  Y  N  35  
S78  C28  C27  DOUB  Y  N  36  
S78  C26  C27  SING  Y  N  37  
S78  C10  H1   SING  N  N  38  
S78  C10  H2   SING  N  N  39  
S78  C13  H3   SING  N  N  40  
S78  C13  H4   SING  N  N  41  
S78  C15  H5   SING  N  N  42  
S78  C15  H6   SING  N  N  43  
S78  C20  H7   SING  N  N  44  
S78  C21  H8   SING  N  N  45  
S78  C26  H9   SING  N  N  46  
S78  C28  H10  SING  N  N  47  
S78  C01  H11  SING  N  N  48  
S78  C01  H12  SING  N  N  49  
S78  C01  H13  SING  N  N  50  
S78  C03  H14  SING  N  N  51  
S78  C03  H15  SING  N  N  52  
S78  C03  H16  SING  N  N  53  
S78  C04  H17  SING  N  N  54  
S78  C04  H18  SING  N  N  55  
S78  C04  H19  SING  N  N  56  
S78  C09  H20  SING  N  N  57  
S78  C09  H21  SING  N  N  58  
S78  C11  H22  SING  N  N  59  
S78  C11  H23  SING  N  N  60  
S78  C12  H24  SING  N  N  61  
S78  C16  H25  SING  N  N  62  
S78  C16  H26  SING  N  N  63  
S78  C23  H27  SING  N  N  64  
S78  C23  H28  SING  N  N  65  
S78  C25  H29  SING  N  N  66  
S78  C27  H30  SING  N  N  67  
S78  C29  H31  SING  N  N  68  
S78  C31  H32  SING  N  N  69  
S78  C32  H33  SING  N  N  70  
S78  C33  H34  SING  N  N  71  
S78  C34  H35  SING  N  N  72  
S78  C34  H36  SING  N  N  73  
S78  N14  H37  SING  N  N  74  
S78  N14  H38  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S78  InChI             InChI                 1.03   "InChI=1S/C28H37N3O3/c1-28(2,3)34-27(32)31-16-8-11-23(21-31)19-29-15-18-33-26-13-7-12-25-24(26)14-17-30(25)20-22-9-5-4-6-10-22/h4-7,9-10,12-14,17,23,29H,8,11,15-16,18-21H2,1-3H3/p+1/t23-/m1/s1"  
S78  InChIKey          InChI                 1.03   JFPVRNAGSDCRRM-HSZRJFAPSA-O  
S78  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)OC(=O)N1CCC[C@H](C[NH2+]CCOc2cccc3n(Cc4ccccc4)ccc23)C1"  
S78  SMILES            CACTVS                3.385  "CC(C)(C)OC(=O)N1CCC[CH](C[NH2+]CCOc2cccc3n(Cc4ccccc4)ccc23)C1"  
S78  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CCC[C@@H](C1)C[NH2+]CCOc2cccc3c2ccn3Cc4ccccc4"  
S78  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)OC(=O)N1CCCC(C1)C[NH2+]CCOc2cccc3c2ccn3Cc4ccccc4"  
#
_pdbx_chem_comp_identifier.comp_id          S78
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S78
_pdbx_chem_comp_synonyms.name        "[(3~{R})-1-[(2-methylpropan-2-yl)oxycarbonyl]piperidin-3-yl]methyl-[2-[1-(phenylmethyl)indol-4-yl]oxyethyl]azanium"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S78  "Create component"  2020-11-10  PDBE  
S78  "Initial release"   2021-09-29  RCSB  
##
