data_SE8
#

_chem_comp.id                                   SE8
_chem_comp.name                                 "5-[(2-{[(3S)-5-{[(2S)-2-amino-2-carboxyethyl]amino}-3-carboxy-3-hydroxy-5-oxopentanoyl]amino}ethyl)amino]-2,5-dioxopentanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H24 N4 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Staphyloferrin B"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-05-14
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       448.382
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SE8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3MWF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SE8  C1    C1    C  0  1  N  N  N   4.925   9.541   -6.940   10.000   0.095  -0.053  C1    SE8   1  
SE8  C2    C2    C  0  1  N  N  S   3.907   9.406   -8.038    8.772  -0.756  -0.248  C2    SE8   2  
SE8  C3    C3    C  0  1  N  N  N   4.441   8.537   -9.166    7.526   0.132  -0.224  C3    SE8   3  
SE8  N4    N4    N  0  1  N  N  N   5.568   9.145   -9.866    6.327  -0.707  -0.293  N4    SE8   4  
SE8  C5    C5    C  0  1  N  N  N   5.406   9.866  -10.957    5.105  -0.138  -0.286  C5    SE8   5  
SE8  C6    C6    C  0  1  N  N  N   6.627  10.575  -11.489    3.872  -1.001  -0.358  C6    SE8   6  
SE8  C7    C7    C  0  1  N  N  S   6.841  11.906  -10.768    2.626  -0.113  -0.333  C7    SE8   7  
SE8  C8    C8    C  0  1  N  N  N   8.189  12.488  -11.232    1.374  -0.991  -0.280  C8    SE8   8  
SE8  C9    C9    C  0  1  N  N  N   8.450  13.921  -10.773    0.147  -0.116  -0.256  C9    SE8   9  
SE8  N10   N10   N  0  1  N  N  N   8.001  14.284   -9.573   -1.078  -0.675  -0.209  N10   SE8  10  
SE8  C11   C11   C  0  1  N  N  N   8.269  15.626   -9.109   -2.271   0.175  -0.185  C11   SE8  11  
SE8  C12   C12   C  0  1  N  N  N   9.102  15.605   -7.839   -3.522  -0.703  -0.132  C12   SE8  12  
SE8  N13   N13   N  0  1  N  N  N   9.015  16.859   -7.103   -4.715   0.147  -0.109  N13   SE8  13  
SE8  C14   C14   C  0  1  N  N  N   8.005  17.173   -6.238   -5.940  -0.412  -0.062  C14   SE8  14  
SE8  C15   C15   C  0  1  N  N  N   7.140  16.082   -5.680   -7.167   0.463  -0.038  C15   SE8  15  
SE8  C16   C16   C  0  1  N  N  N   6.159  15.835   -6.799   -8.419  -0.416   0.015  C16   SE8  16  
SE8  C17   C17   C  0  1  N  N  N   5.657  14.431   -6.932   -9.646   0.459   0.039  C17   SE8  17  
SE8  C18   C18   C  0  1  N  N  N   4.207  14.331   -6.897  -11.001  -0.159   0.091  C18   SE8  18  
SE8  O19   O19   O  0  1  N  N  N   5.115   8.558   -6.177   10.507   0.787  -1.085  O19   SE8  19  
SE8  O20   O20   O  0  1  N  N  N   5.500  10.639   -6.800   10.524   0.159   1.033  O20   SE8  20  
SE8  N21   N21   N  0  1  N  N  N   3.556  10.751   -8.534    8.687  -1.748   0.832  N21   SE8  21  
SE8  O22   O22   O  0  1  N  N  N   4.347   9.993  -11.540    4.999   1.068  -0.222  O22   SE8  22  
SE8  C23   C23   C  0  1  N  N  N   5.679  12.844  -11.043    2.667   0.777   0.882  C23   SE8  23  
SE8  O24   O24   O  0  1  N  N  N   5.599  13.417  -12.158    2.668   1.978   0.752  O24   SE8  24  
SE8  O25   O25   O  0  1  N  N  N   4.821  13.049  -10.148    2.703   0.235   2.110  O25   SE8  25  
SE8  O26   O26   O  0  1  N  N  N   6.832  11.667   -9.349    2.593   0.693  -1.513  O26   SE8  26  
SE8  O27   O27   O  0  1  N  N  N   9.073  14.684  -11.504    0.263   1.091  -0.279  O27   SE8  27  
SE8  O28   O28   O  0  1  N  N  N   7.748  18.318   -5.914   -6.056  -1.619  -0.039  O28   SE8  28  
SE8  O29   O29   O  0  1  N  N  N   6.388  13.471   -7.194   -9.531   1.661   0.016  O29   SE8  29  
SE8  O30   O30   O  0  1  N  N  N   3.680  13.373   -7.453  -11.116  -1.366   0.115  O30   SE8  30  
SE8  O31   O31   O  0  1  N  N  N   3.525  15.234   -6.349  -12.097   0.622   0.113  O31   SE8  31  
SE8  H2    H2    H  0  1  N  N  N   3.005   8.916   -7.642    8.834  -1.269  -1.208  H2    SE8  32  
SE8  H3    H3    H  0  1  N  N  N   4.775   7.580   -8.738    7.511   0.711   0.699  H3    SE8  33  
SE8  H3A   H3A   H  0  1  N  N  N   3.630   8.374   -9.891    7.546   0.809  -1.078  H3A   SE8  34  
SE8  HN4   HN4   H  0  1  N  N  N   6.491   9.010   -9.507    6.412  -1.672  -0.345  HN4   SE8  35  
SE8  H6    H6    H  0  1  N  N  N   7.509   9.937  -11.332    3.887  -1.580  -1.281  H6    SE8  36  
SE8  H6A   H6A   H  0  1  N  N  N   6.490  10.767  -12.563    3.852  -1.678   0.496  H6A   SE8  37  
SE8  H8    H8    H  0  1  N  N  N   8.989  11.852  -10.824    1.345  -1.635  -1.159  H8    SE8  38  
SE8  H8A   H8A   H  0  1  N  N  N   8.199  12.479  -12.332    1.400  -1.606   0.619  H8A   SE8  39  
SE8  HN10  HN10  H  0  0  N  N  N   7.489  13.641   -9.004   -1.170  -1.641  -0.191  HN10  SE8  40  
SE8  H11   H11   H  0  1  N  N  N   8.820  16.171   -9.889   -2.241   0.818   0.694  H11   SE8  41  
SE8  H11A  H11A  H  0  0  N  N  N   7.314  16.131   -8.902   -2.296   0.790  -1.085  H11A  SE8  42  
SE8  H12   H12   H  0  1  N  N  N   8.736  14.794   -7.193   -3.552  -1.347  -1.012  H12   SE8  43  
SE8  H12A  H12A  H  0  0  N  N  N  10.153  15.431   -8.112   -3.497  -1.318   0.767  H12A  SE8  44  
SE8  HN13  HN13  H  0  0  N  N  N   9.741  17.533   -7.240   -4.623   1.112  -0.127  HN13  SE8  45  
SE8  H15   H15   H  0  1  N  N  N   7.723  15.180   -5.440   -7.137   1.106   0.841  H15   SE8  46  
SE8  H15A  H15A  H  0  0  N  N  N   6.634  16.394   -4.754   -7.193   1.077  -0.937  H15A  SE8  47  
SE8  H16   H16   H  0  1  N  N  N   5.286  16.480   -6.619   -8.449  -1.059  -0.864  H16   SE8  48  
SE8  H16A  H16A  H  0  0  N  N  N   6.664  16.094   -7.741   -8.393  -1.031   0.915  H16A  SE8  49  
SE8  HO19  HO19  H  0  0  N  N  N   5.746   8.794   -5.507   11.293   1.322  -0.911  HO19  SE8  50  
SE8  HN21  HN21  H  0  0  N  N  N   2.879  10.671   -9.265    9.467  -2.388   0.798  HN21  SE8  51  
SE8  HN2A  HN2A  H  0  0  N  N  N   3.175  11.293   -7.785    8.629  -1.298   1.733  HN2A  SE8  52  
SE8  HO25  HO25  H  0  0  N  N  N   4.171  13.665  -10.467    2.729   0.846   2.859  HO25  SE8  53  
SE8  HO26  HO26  H  0  0  N  N  N   6.652  12.480   -8.892    2.565   0.186  -2.335  HO26  SE8  54  
SE8  HO31  HO31  H  0  0  N  N  N   2.601  15.037   -6.447  -12.954   0.175   0.147  HO31  SE8  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SE8  C2   C1    SING  N  N   1  
SE8  C1   O20   DOUB  N  N   2  
SE8  C1   O19   SING  N  N   3  
SE8  C3   C2    SING  N  N   4  
SE8  N21  C2    SING  N  N   5  
SE8  C2   H2    SING  N  N   6  
SE8  N4   C3    SING  N  N   7  
SE8  C3   H3    SING  N  N   8  
SE8  C3   H3A   SING  N  N   9  
SE8  C5   N4    SING  N  N  10  
SE8  N4   HN4   SING  N  N  11  
SE8  O22  C5    DOUB  N  N  12  
SE8  C6   C5    SING  N  N  13  
SE8  C6   C7    SING  N  N  14  
SE8  C6   H6    SING  N  N  15  
SE8  C6   H6A   SING  N  N  16  
SE8  C8   C7    SING  N  N  17  
SE8  C23  C7    SING  N  N  18  
SE8  C7   O26   SING  N  N  19  
SE8  C8   C9    SING  N  N  20  
SE8  C8   H8    SING  N  N  21  
SE8  C8   H8A   SING  N  N  22  
SE8  O27  C9    DOUB  N  N  23  
SE8  C9   N10   SING  N  N  24  
SE8  N10  C11   SING  N  N  25  
SE8  N10  HN10  SING  N  N  26  
SE8  C11  C12   SING  N  N  27  
SE8  C11  H11   SING  N  N  28  
SE8  C11  H11A  SING  N  N  29  
SE8  C12  N13   SING  N  N  30  
SE8  C12  H12   SING  N  N  31  
SE8  C12  H12A  SING  N  N  32  
SE8  N13  C14   SING  N  N  33  
SE8  N13  HN13  SING  N  N  34  
SE8  C14  O28   DOUB  N  N  35  
SE8  C14  C15   SING  N  N  36  
SE8  C16  C15   SING  N  N  37  
SE8  C15  H15   SING  N  N  38  
SE8  C15  H15A  SING  N  N  39  
SE8  C17  C16   SING  N  N  40  
SE8  C16  H16   SING  N  N  41  
SE8  C16  H16A  SING  N  N  42  
SE8  O29  C17   DOUB  N  N  43  
SE8  C17  C18   SING  N  N  44  
SE8  O30  C18   DOUB  N  N  45  
SE8  C18  O31   SING  N  N  46  
SE8  O19  HO19  SING  N  N  47  
SE8  N21  HN21  SING  N  N  48  
SE8  N21  HN2A  SING  N  N  49  
SE8  O24  C23   DOUB  N  N  50  
SE8  C23  O25   SING  N  N  51  
SE8  O25  HO25  SING  N  N  52  
SE8  O26  HO26  SING  N  N  53  
SE8  O31  HO31  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SE8  SMILES            ACDLabs               12.01  "O=C(NCC(C(=O)O)N)CC(O)(C(=O)O)CC(=O)NCCNC(=O)CCC(=O)C(=O)O"  
SE8  SMILES_CANONICAL  CACTVS                3.370  "N[C@@H](CNC(=O)C[C@@](O)(CC(=O)NCCNC(=O)CCC(=O)C(O)=O)C(O)=O)C(O)=O"  
SE8  SMILES            CACTVS                3.370  "N[CH](CNC(=O)C[C](O)(CC(=O)NCCNC(=O)CCC(=O)C(O)=O)C(O)=O)C(O)=O"  
SE8  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C(CC(=O)NCCNC(=O)C[C@](CC(=O)NC[C@@H](C(=O)O)N)(C(=O)O)O)C(=O)C(=O)O"  
SE8  SMILES            "OpenEye OEToolkits"  1.7.0  "C(CC(=O)NCCNC(=O)CC(CC(=O)NCC(C(=O)O)N)(C(=O)O)O)C(=O)C(=O)O"  
SE8  InChI             InChI                 1.03   "InChI=1S/C16H24N4O11/c17-8(13(25)26)7-20-12(24)6-16(31,15(29)30)5-11(23)19-4-3-18-10(22)2-1-9(21)14(27)28/h8,31H,1-7,17H2,(H,18,22)(H,19,23)(H,20,24)(H,25,26)(H,27,28)(H,29,30)/t8-,16-/m0/s1"  
SE8  InChIKey          InChI                 1.03   SIAZVTIHOHTZDD-PWJLMRLQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SE8  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(2-{[(3S)-5-{[(2S)-2-amino-2-carboxyethyl]amino}-3-carboxy-3-hydroxy-5-oxopentanoyl]amino}ethyl)amino]-2,5-dioxopentanoic acid"  
SE8  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2S)-2-[2-[[(2S)-2-azanyl-3-hydroxy-3-oxo-propyl]amino]-2-oxo-ethyl]-2-hydroxy-4-[2-[(5-hydroxy-4,5-dioxo-pentanoyl)amino]ethylamino]-4-oxo-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SE8  "Create component"   2010-05-14  RCSB  
SE8  "Modify descriptor"  2011-06-04  RCSB  
SE8  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SE8
_pdbx_chem_comp_synonyms.name        "Staphyloferrin B"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
