data_TG8
#

_chem_comp.id                                   TG8
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H22 N6 O11 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-22
_chem_comp.pdbx_modified_date                   2021-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       560.348
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TG8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BDL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TG8  CA7    C1   C  0  1  N  N  N   4.219  -30.251  10.832   5.470  -5.070   2.269  CA7    TG8   1  
TG8  NA1    N1   N  0  1  N  N  N   3.410  -30.328   9.628   4.680  -4.040   1.590  NA1    TG8   2  
TG8  CA6    C2   C  0  1  Y  N  N   3.996  -30.829   8.400   4.727  -3.928   0.207  CA6    TG8   3  
TG8  CA5    C3   C  0  1  Y  N  N   5.233  -31.722   8.458   5.609  -4.710  -0.528  CA5    TG8   4  
TG8  CA4    C4   C  0  1  Y  N  N   5.769  -32.180   7.347   5.654  -4.597  -1.902  CA4    TG8   5  
TG8  CA3    C5   C  0  1  Y  N  N   5.153  -31.816   5.999   4.822  -3.705  -2.561  CA3    TG8   6  
TG8  CA2    C6   C  0  1  Y  N  N   4.088  -31.045   5.952   3.941  -2.921  -1.850  CA2    TG8   7  
TG8  CA1    C7   C  0  1  Y  N  N   3.461  -30.512   7.240   3.878  -3.028  -0.458  CA1    TG8   8  
TG8  CA     C8   C  0  1  N  N  N   2.219  -29.615   7.185   2.938  -2.193   0.308  CA     TG8   9  
TG8  OA     O1   O  0  1  N  N  N   2.334  -28.460   6.947   2.960  -2.211   1.523  OA     TG8  10  
TG8  "O3'"  O2   O  0  1  N  N  N   0.947  -30.169   7.409   2.052  -1.408  -0.338  "O3'"  TG8  11  
TG8  "C3'"  C9   C  0  1  N  N  S  -0.102  -29.869   6.435   1.156  -0.613   0.481  "C3'"  TG8  12  
TG8  "C2'"  C10  C  0  1  N  N  R   0.082  -30.637   5.220   1.724   0.814   0.676  "C2'"  TG8  13  
TG8  "O2'"  O3   O  0  1  N  N  N   1.424  -30.581   4.657   3.131   0.842   0.429  "O2'"  TG8  14  
TG8  "C4'"  C11  C  0  1  N  N  R  -1.381  -30.412   6.970  -0.184  -0.390  -0.246  "C4'"  TG8  15  
TG8  "C5'"  C12  C  0  1  N  N  N  -2.519  -29.512   6.639  -1.329  -0.979   0.581  "C5'"  TG8  16  
TG8  "O5'"  O4   O  0  1  N  N  N  -2.922  -29.680   5.307  -2.551  -0.872  -0.153  "O5'"  TG8  17  
TG8  PA     P1   P  0  1  N  N  N  -3.873  -28.531   4.600  -3.964  -1.393   0.416  PA     TG8  18  
TG8  O3A    O5   O  0  1  N  N  N  -3.790  -27.252   5.302  -3.917  -2.994   0.583  O3A    TG8  19  
TG8  O2A    O6   O  0  1  N  N  N  -3.347  -28.166   3.289  -4.228  -0.767   1.730  O2A    TG8  20  
TG8  O1A    O7   O  0  1  N  N  N  -5.433  -29.057   4.479  -5.136  -0.995  -0.613  O1A    TG8  21  
TG8  PB     P2   P  0  1  N  N  N  -6.755  -28.071   4.399  -6.734  -0.844  -0.484  PB     TG8  22  
TG8  O3B    O8   O  0  1  N  N  N  -7.956  -28.723   3.882  -7.401  -0.933  -1.947  O3B    TG8  23  
TG8  O2B    O9   O  0  1  N  N  N  -6.585  -26.896   3.548  -7.265  -1.932   0.367  O2B    TG8  24  
TG8  O1B    O10  O  0  1  N  N  N  -7.175  -27.532   5.690  -7.086   0.579   0.181  O1B    TG8  25  
TG8  "O4'"  O11  O  0  1  N  N  N  -1.575  -31.791   6.372  -0.361   1.029  -0.390  "O4'"  TG8  26  
TG8  "C1'"  C13  C  0  1  N  N  R  -0.244  -31.997   5.689   0.956   1.620  -0.403  "C1'"  TG8  27  
TG8  N9     N2   N  0  1  Y  N  N  -0.262  -32.907   4.611   0.890   3.037  -0.040  N9     TG8  28  
TG8  C8     C14  C  0  1  Y  N  N  -0.827  -32.638   3.428  -0.132   3.654   0.619  C8     TG8  29  
TG8  N7     N3   N  0  1  Y  N  N  -0.626  -33.750   2.641   0.142   4.916   0.781  N7     TG8  30  
TG8  C5     C15  C  0  1  Y  N  N   0.119  -34.697   3.471   1.353   5.188   0.240  C5     TG8  31  
TG8  C4     C16  C  0  1  Y  N  N   0.313  -34.097   4.681   1.848   3.986  -0.294  C4     TG8  32  
TG8  N3     N4   N  0  1  Y  N  N   0.959  -34.705   5.651   3.038   3.983  -0.886  N3     TG8  33  
TG8  C2     C17  C  0  1  Y  N  N   1.436  -35.956   5.422   3.744   5.090  -0.977  C2     TG8  34  
TG8  N1     N5   N  0  1  Y  N  N   1.247  -36.562   4.214   3.319   6.244  -0.496  N1     TG8  35  
TG8  C6     C18  C  0  1  Y  N  N   0.592  -35.938   3.240   2.145   6.343   0.118  C6     TG8  36  
TG8  N6     N6   N  0  1  N  N  N   0.389  -36.579   1.955   1.709   7.556   0.623  N6     TG8  37  
TG8  H1     H1   H  0  1  N  N  N   3.612  -29.850  11.657   5.165  -6.054   1.914  H1     TG8  38  
TG8  H2     H2   H  0  1  N  N  N   4.579  -31.256  11.096   6.528  -4.918   2.052  H2     TG8  39  
TG8  H3     H3   H  0  1  N  N  N   5.079  -29.588  10.654   5.306  -5.003   3.344  H3     TG8  40  
TG8  H4     H4   H  0  1  N  N  N   3.085  -29.402   9.437   4.124  -3.436   2.107  H4     TG8  41  
TG8  H5     H5   H  0  1  N  N  N   5.669  -31.978   9.412   6.261  -5.407  -0.023  H5     TG8  42  
TG8  H6     H6   H  0  1  N  N  N   6.643  -32.812   7.389   6.343  -5.207  -2.468  H6     TG8  43  
TG8  H7     H7   H  0  1  N  N  N   5.590  -32.191   5.085   4.866  -3.625  -3.637  H7     TG8  44  
TG8  H8     H8   H  0  1  N  N  N   3.654  -30.787   4.997   3.295  -2.228  -2.369  H8     TG8  45  
TG8  H9     H9   H  0  1  N  N  N  -0.177  -28.790   6.234   0.992  -1.095   1.445  H9     TG8  46  
TG8  H10    H10  H  0  1  N  N  N  -0.653  -30.323   4.464   1.498   1.189   1.675  H10    TG8  47  
TG8  H11    H11  H  0  1  N  N  N   1.608  -29.696   4.363   3.517   1.728   0.451  H11    TG8  48  
TG8  H12    H12  H  0  1  N  N  N  -1.303  -30.508   8.063  -0.156  -0.861  -1.228  H12    TG8  49  
TG8  H13    H13  H  0  1  N  N  N  -2.208  -28.468   6.792  -1.122  -2.028   0.791  H13    TG8  50  
TG8  H14    H14  H  0  1  N  N  N  -3.365  -29.743   7.303  -1.419  -0.431   1.518  H14    TG8  51  
TG8  H15    H15  H  0  1  N  N  N  -3.433  -26.593   4.719  -3.748  -3.471  -0.241  H15    TG8  52  
TG8  H16    H16  H  0  1  N  N  N  -8.298  -28.223   3.150  -8.365  -0.849  -1.945  H16    TG8  53  
TG8  H17    H17  H  0  1  N  N  N  -7.225  -26.585   5.637  -6.768   1.339  -0.324  H17    TG8  54  
TG8  H18    H18  H  0  1  N  N  N   0.496  -32.311   6.440   1.423   1.494  -1.380  H18    TG8  55  
TG8  H19    H19  H  0  1  N  N  N  -1.339  -31.730   3.147  -1.035   3.168   0.955  H19    TG8  56  
TG8  H20    H20  H  0  1  N  N  N   1.970  -36.476   6.203   4.707   5.054  -1.464  H20    TG8  57  
TG8  H21    H21  H  0  1  N  N  N   0.804  -37.489   1.966   0.849   7.616   1.068  H21    TG8  58  
TG8  H22    H22  H  0  1  N  N  N  -0.591  -36.662   1.775   2.265   8.346   0.534  H22    TG8  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TG8  N6     C6     SING  N  N   1  
TG8  N7     C8     DOUB  Y  N   2  
TG8  N7     C5     SING  Y  N   3  
TG8  C6     C5     DOUB  Y  N   4  
TG8  C6     N1     SING  Y  N   5  
TG8  O2A    PA     DOUB  N  N   6  
TG8  C8     N9     SING  Y  N   7  
TG8  C5     C4     SING  Y  N   8  
TG8  O2B    PB     DOUB  N  N   9  
TG8  O3B    PB     SING  N  N  10  
TG8  N1     C2     DOUB  Y  N  11  
TG8  PB     O1A    SING  N  N  12  
TG8  PB     O1B    SING  N  N  13  
TG8  O1A    PA     SING  N  N  14  
TG8  PA     O3A    SING  N  N  15  
TG8  PA     "O5'"  SING  N  N  16  
TG8  N9     C4     SING  Y  N  17  
TG8  N9     "C1'"  SING  N  N  18  
TG8  "O2'"  "C2'"  SING  N  N  19  
TG8  C4     N3     DOUB  Y  N  20  
TG8  "C2'"  "C1'"  SING  N  N  21  
TG8  "C2'"  "C3'"  SING  N  N  22  
TG8  "O5'"  "C5'"  SING  N  N  23  
TG8  C2     N3     SING  Y  N  24  
TG8  "C1'"  "O4'"  SING  N  N  25  
TG8  CA2    CA3    DOUB  Y  N  26  
TG8  CA2    CA1    SING  Y  N  27  
TG8  CA3    CA4    SING  Y  N  28  
TG8  "O4'"  "C4'"  SING  N  N  29  
TG8  "C3'"  "C4'"  SING  N  N  30  
TG8  "C3'"  "O3'"  SING  N  N  31  
TG8  "C5'"  "C4'"  SING  N  N  32  
TG8  OA     CA     DOUB  N  N  33  
TG8  CA     CA1    SING  N  N  34  
TG8  CA     "O3'"  SING  N  N  35  
TG8  CA1    CA6    DOUB  Y  N  36  
TG8  CA4    CA5    DOUB  Y  N  37  
TG8  CA6    CA5    SING  Y  N  38  
TG8  CA6    NA1    SING  N  N  39  
TG8  NA1    CA7    SING  N  N  40  
TG8  CA7    H1     SING  N  N  41  
TG8  CA7    H2     SING  N  N  42  
TG8  CA7    H3     SING  N  N  43  
TG8  NA1    H4     SING  N  N  44  
TG8  CA5    H5     SING  N  N  45  
TG8  CA4    H6     SING  N  N  46  
TG8  CA3    H7     SING  N  N  47  
TG8  CA2    H8     SING  N  N  48  
TG8  "C3'"  H9     SING  N  N  49  
TG8  "C2'"  H10    SING  N  N  50  
TG8  "O2'"  H11    SING  N  N  51  
TG8  "C4'"  H12    SING  N  N  52  
TG8  "C5'"  H13    SING  N  N  53  
TG8  "C5'"  H14    SING  N  N  54  
TG8  O3A    H15    SING  N  N  55  
TG8  O3B    H16    SING  N  N  56  
TG8  O1B    H17    SING  N  N  57  
TG8  "C1'"  H18    SING  N  N  58  
TG8  C8     H19    SING  N  N  59  
TG8  C2     H20    SING  N  N  60  
TG8  N6     H21    SING  N  N  61  
TG8  N6     H22    SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TG8  InChI             InChI                 1.03   "InChI=1S/C18H22N6O11P2/c1-20-10-5-3-2-4-9(10)18(26)34-14-11(6-32-37(30,31)35-36(27,28)29)33-17(13(14)25)24-8-23-12-15(19)21-7-22-16(12)24/h2-5,7-8,11,13-14,17,20,25H,6H2,1H3,(H,30,31)(H2,19,21,22)(H2,27,28,29)/t11-,13-,14-,17-/m1/s1"  
TG8  InChIKey          InChI                 1.03   ANMCUTJZONROBG-LSCFUAHRSA-N  
TG8  SMILES_CANONICAL  CACTVS                3.385  "CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34"  
TG8  SMILES            CACTVS                3.385  "CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34"  
TG8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O"  
TG8  SMILES            "OpenEye OEToolkits"  2.0.7  "CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          TG8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TG8  "Create component"  2020-12-22  PDBE  
TG8  "Initial release"   2021-06-09  RCSB  
##
