data_YA8
# 
_chem_comp.id                                    YA8 
_chem_comp.name                                  "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl](6-bromonaphthalen-2-yl)methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H22 Br N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.389 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YA8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YA8 C02  C1  C  0 1 N N N N N N -13.965 10.479 49.172 -0.914  2.839  -0.375 C02  YA8 1  
YA8 C04  C2  C  0 1 N N R N N N -11.525 10.531 49.389 -1.493  0.470  -0.323 C04  YA8 2  
YA8 C05  C3  C  0 1 N N N N N N -11.858 9.479  48.340 0.006   0.643  -0.621 C05  YA8 3  
YA8 C06  C4  C  0 1 N N S N N N -12.354 12.527 49.014 -2.954  1.667  0.652  C06  YA8 4  
YA8 C07  C5  C  0 1 N N R N N N -11.021 11.792 48.682 -1.861  0.689  1.150  C07  YA8 5  
YA8 N09  N1  N  0 1 N N N N N N -10.655 13.355 50.401 -3.957  -0.506 1.077  N09  YA8 6  
YA8 C10  C6  C  0 1 N N N N N N -9.925  12.450 49.486 -2.663  -0.469 1.769  C10  YA8 7  
YA8 C15  C7  C  0 1 N N N N N N -13.991 9.125  47.021 1.563   2.552  -0.186 C15  YA8 8  
YA8 C17  C8  C  0 1 N N N N N N -10.224 13.806 51.641 -4.805  -1.553 1.065  C17  YA8 9  
YA8 C18  C9  C  0 1 Y N N N N N -8.980  13.342 52.308 -6.126  -1.426 0.418  C18  YA8 10 
YA8 C20  C10 C  0 1 Y N N N N N -8.964  11.987 52.801 -6.623  -2.475 -0.368 C20  YA8 11 
YA8 C21  C11 C  0 1 Y N N N N N -7.873  11.444 53.475 -7.841  -2.371 -0.970 C21  YA8 12 
YA8 C22  C12 C  0 1 Y N N N N N -7.861  14.172 52.523 -6.874  -0.269 0.595  C22  YA8 13 
YA8 C23  C13 C  0 1 Y N N N N N -6.744  13.629 53.214 -8.124  -0.155 -0.020 C23  YA8 14 
YA8 C24  C14 C  0 1 Y N N N N N -6.773  12.311 53.659 -8.604  -1.216 -0.810 C24  YA8 15 
YA8 C28  C15 C  0 1 Y N N N N N -13.285 8.330  45.999 2.742   1.670  -0.314 C28  YA8 16 
YA8 N01  N2  N  0 1 N N N N N N -13.315 9.667  48.098 0.325   2.055  -0.377 N01  YA8 17 
YA8 C03  C16 C  0 1 N N S N N N -12.838 11.281 49.818 -2.088  1.872  -0.601 C03  YA8 18 
YA8 C08  C17 C  0 1 N N N N N N -11.940 13.785 49.787 -4.182  0.776  0.401  C08  YA8 19 
YA8 O16  O1  O  0 1 N N N N N N -15.232 9.317  46.921 1.710   3.727  0.091  O16  YA8 20 
YA8 O19  O2  O  0 1 N N N N N N -11.029 14.568 52.208 -4.482  -2.603 1.586  O19  YA8 21 
YA8 N25  N3  N  0 1 Y N N N N N -5.525  12.106 54.294 -9.833  -0.819 -1.275 N25  YA8 22 
YA8 N26  N4  N  0 1 Y N N N N N -4.825  13.265 54.195 -10.061 0.466  -0.763 N26  YA8 23 
YA8 N27  N5  N  0 1 Y N N N N N -5.545  14.195 53.563 -9.061  0.823  -0.035 N27  YA8 24 
YA8 C29  C18 C  0 1 Y N N N N N -12.522 8.907  44.928 2.701   0.573  -1.193 C29  YA8 25 
YA8 C30  C19 C  0 1 Y N N N N N -11.912 8.110  43.992 3.770   -0.251 -1.327 C30  YA8 26 
YA8 C31  C20 C  0 1 Y N N N N N -13.407 6.963  46.071 3.881   1.934  0.429  C31  YA8 27 
YA8 C32  C21 C  0 1 Y N N N N N -12.772 6.117  45.140 4.996   1.093  0.302  C32  YA8 28 
YA8 C33  C22 C  0 1 Y N N N N N -12.032 6.689  44.076 4.940   -0.014 -0.583 C33  YA8 29 
YA8 C34  C23 C  0 1 Y N N N N N -11.420 5.829  43.144 6.060   -0.853 -0.706 C34  YA8 30 
YA8 C35  C24 C  0 1 Y N N N N N -11.566 4.460  43.279 7.179   -0.598 0.028  C35  YA8 31 
YA8 C36  C25 C  0 1 Y N N N N N -12.318 3.869  44.343 7.232   0.487  0.903  C36  YA8 32 
YA8 C37  C26 C  0 1 Y N N N N N -12.904 4.696  45.266 6.171   1.328  1.040  C37  YA8 33 
YA8 BR38 BR1 BR 0 0 N N N N N N -10.743 3.262  42.038 8.682   -1.732 -0.142 BR38 YA8 34 
YA8 H1   H1  H  0 1 N N N N N N -14.718 11.154 48.740 -1.030  3.342  0.585  H1   YA8 35 
YA8 H2   H2  H  0 1 N N N N N N -14.443 9.822  49.914 -0.884  3.578  -1.177 H2   YA8 36 
YA8 H3   H3  H  0 1 N N N N N N -10.903 10.182 50.227 -1.964  -0.384 -0.811 H3   YA8 37 
YA8 H4   H4  H  0 1 N N N N N N -11.651 8.468  48.720 0.594   0.009  0.043  H4   YA8 38 
YA8 H5   H5  H  0 1 N N N N N N -11.283 9.649  47.418 0.212   0.388  -1.660 H5   YA8 39 
YA8 H6   H6  H  0 1 N N N N N N -12.968 12.736 48.126 -3.141  2.546  1.270  H6   YA8 40 
YA8 H7   H7  H  0 1 N N N N N N -10.816 11.675 47.608 -1.078  1.112  1.780  H7   YA8 41 
YA8 H8   H8  H  0 1 N N N N N N -9.350  11.702 50.051 -2.134  -1.410 1.620  H8   YA8 42 
YA8 H9   H9  H  0 1 N N N N N N -9.246  13.017 48.833 -2.814  -0.291 2.834  H9   YA8 43 
YA8 H10  H10 H  0 1 N N N N N N -9.834  11.368 52.641 -6.037  -3.373 -0.497 H10  YA8 44 
YA8 H11  H11 H  0 1 N N N N N N -7.868  10.425 53.834 -8.216  -3.184 -1.574 H11  YA8 45 
YA8 H12  H12 H  0 1 N N N N N N -7.853  15.193 52.172 -6.493  0.538  1.204  H12  YA8 46 
YA8 H13  H13 H  0 1 N N N N N N -12.938 11.443 50.901 -2.614  2.000  -1.547 H13  YA8 47 
YA8 H14  H14 H  0 1 N N N N N N -11.795 14.641 49.111 -5.074  1.255  0.806  H14  YA8 48 
YA8 H15  H15 H  0 1 N N N N N N -12.683 14.046 50.555 -4.306  0.612  -0.669 H15  YA8 49 
YA8 H16  H16 H  0 1 N N N N N N -5.216  11.263 54.734 -10.428 -1.329 -1.847 H16  YA8 50 
YA8 H17  H17 H  0 1 N N N N N N -12.427 9.981  44.858 1.806   0.384  -1.768 H17  YA8 51 
YA8 H18  H18 H  0 1 N N N N N N -11.341 8.557  43.192 3.723   -1.090 -2.006 H18  YA8 52 
YA8 H19  H19 H  0 1 N N N N N N -14.003 6.527  46.859 3.911   2.780  1.099  H19  YA8 53 
YA8 H20  H20 H  0 1 N N N N N N -10.840 6.236  42.329 6.033   -1.698 -1.378 H20  YA8 54 
YA8 H21  H21 H  0 1 N N N N N N -12.422 2.797  44.417 8.131   0.667  1.474  H21  YA8 55 
YA8 H22  H22 H  0 1 N N N N N N -13.465 4.276  46.088 6.228   2.167  1.718  H22  YA8 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YA8 N01 C02  SING N N 1  
YA8 N01 C05  SING N N 2  
YA8 N01 C15  SING N N 3  
YA8 C02 C03  SING N N 4  
YA8 C03 C04  SING N N 5  
YA8 C03 C06  SING N N 6  
YA8 C04 C05  SING N N 7  
YA8 C04 C07  SING N N 8  
YA8 C06 C07  SING N N 9  
YA8 C06 C08  SING N N 10 
YA8 C07 C10  SING N N 11 
YA8 C08 N09  SING N N 12 
YA8 N09 C10  SING N N 13 
YA8 N09 C17  SING N N 14 
YA8 C15 O16  DOUB N N 15 
YA8 C15 C28  SING N N 16 
YA8 C17 C18  SING N N 17 
YA8 C17 O19  DOUB N N 18 
YA8 C18 C20  DOUB Y N 19 
YA8 C18 C22  SING Y N 20 
YA8 C20 C21  SING Y N 21 
YA8 C21 C24  DOUB Y N 22 
YA8 C22 C23  DOUB Y N 23 
YA8 C23 C24  SING Y N 24 
YA8 C23 N27  SING Y N 25 
YA8 C24 N25  SING Y N 26 
YA8 N25 N26  SING Y N 27 
YA8 N26 N27  DOUB Y N 28 
YA8 C28 C29  DOUB Y N 29 
YA8 C28 C31  SING Y N 30 
YA8 C29 C30  SING Y N 31 
YA8 C30 C33  DOUB Y N 32 
YA8 C31 C32  DOUB Y N 33 
YA8 C32 C33  SING Y N 34 
YA8 C32 C37  SING Y N 35 
YA8 C33 C34  SING Y N 36 
YA8 C34 C35  DOUB Y N 37 
YA8 C35 C36  SING Y N 38 
YA8 C35 BR38 SING N N 39 
YA8 C36 C37  DOUB Y N 40 
YA8 C02 H1   SING N N 41 
YA8 C02 H2   SING N N 42 
YA8 C04 H3   SING N N 43 
YA8 C05 H4   SING N N 44 
YA8 C05 H5   SING N N 45 
YA8 C06 H6   SING N N 46 
YA8 C07 H7   SING N N 47 
YA8 C10 H8   SING N N 48 
YA8 C10 H9   SING N N 49 
YA8 C20 H10  SING N N 50 
YA8 C21 H11  SING N N 51 
YA8 C22 H12  SING N N 52 
YA8 C03 H13  SING N N 53 
YA8 C08 H14  SING N N 54 
YA8 C08 H15  SING N N 55 
YA8 N25 H16  SING N N 56 
YA8 C29 H17  SING N N 57 
YA8 C30 H18  SING N N 58 
YA8 C31 H19  SING N N 59 
YA8 C34 H20  SING N N 60 
YA8 C36 H21  SING N N 61 
YA8 C37 H22  SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YA8 SMILES           ACDLabs              12.01 "Brc1ccc2cc(ccc2c1)C(=O)N1CC2C(C1)C1CN(CC21)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                           
YA8 InChI            InChI                1.06  "InChI=1S/C26H22BrN5O2/c27-18-5-3-14-7-16(2-1-15(14)8-18)25(33)31-10-19-20(11-31)22-13-32(12-21(19)22)26(34)17-4-6-23-24(9-17)29-30-28-23/h1-9,19-22H,10-13H2,(H,28,29,30)/t19-,20+,21+,22-" 
YA8 InChIKey         InChI                1.06  VLNJAZOILNVBBF-ZDNVTZCJSA-N                                                                                                                                                                  
YA8 SMILES_CANONICAL CACTVS               3.385 "Brc1ccc2cc(ccc2c1)C(=O)N3C[C@H]4[C@@H](C3)[C@@H]5CN(C[C@H]45)C(=O)c6ccc7[nH]nnc7c6"                                                                                                         
YA8 SMILES           CACTVS               3.385 "Brc1ccc2cc(ccc2c1)C(=O)N3C[CH]4[CH](C3)[CH]5CN(C[CH]45)C(=O)c6ccc7[nH]nnc7c6"                                                                                                               
YA8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)Br)C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                                     
YA8 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc2c1cc(cc2)Br)C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6ccc7c(c6)nn[nH]7"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YA8 "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl](6-bromonaphthalen-2-yl)methanone"           
YA8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{S},2~{S},6~{R},7~{R})-9-(1~{H}-benzotriazol-5-ylcarbonyl)-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]-(6-bromanylnaphthalen-2-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YA8 "Create component" 2023-06-12 RCSB 
YA8 "Initial release"  2024-12-18 RCSB 
# 
