data_829
# 
_chem_comp.id                                    829 
_chem_comp.name                                  "5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H17 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-10-28 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        347.326 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     829 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3KE1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
829 N1     N1   N 0 1 N N N 20.663 -34.086 2.974  -2.936 0.418  0.465  N1   829 1  
829 C2     C2   C 0 1 N N N 19.646 -33.388 3.554  -3.044 0.806  -0.819 C2   829 2  
829 O2     O2   O 0 1 N N N 19.051 -33.809 4.571  -2.361 0.261  -1.670 O2   829 3  
829 N3     N3   N 0 1 N N N 19.213 -32.194 3.051  -3.884 1.776  -1.176 N3   829 4  
829 C4     C4   C 0 1 N N N 19.776 -31.635 1.957  -4.638 2.386  -0.271 C4   829 5  
829 N4     N4   N 0 1 N N N 19.332 -30.451 1.471  -5.503 3.386  -0.652 N4   829 6  
829 C5     C5   C 0 1 N N N 20.828 -32.311 1.349  -4.549 2.003  1.083  C5   829 7  
829 C6     C6   C 0 1 N N N 21.249 -33.527 1.886  -3.695 1.011  1.429  C6   829 8  
829 C07    C07  C 0 1 N N N 25.557 -34.661 0.817  3.391  -0.474 -0.739 C07  829 9  
829 C08    C08  C 0 1 Y N N 27.162 -36.696 0.667  4.244  1.014  1.088  C08  829 10 
829 C09    C09  C 0 1 Y N N 28.234 -37.355 0.032  5.245  1.817  1.599  C09  829 11 
829 "C1'"  C1*  C 0 1 N N R 21.185 -35.380 3.522  -2.004 -0.652 0.827  C1*  829 12 
829 N10    N10  N 0 1 Y N N 28.852 -36.791 -1.035 6.366  2.007  0.933  N10  829 13 
829 C11    C11  C 0 1 Y N N 28.455 -35.586 -1.505 6.587  1.448  -0.240 C11  829 14 
829 C12    C12  C 0 1 Y N N 27.390 -34.893 -0.909 5.639  0.631  -0.825 C12  829 15 
829 C13    C13  C 0 1 Y N N 26.727 -35.437 0.206  4.437  0.396  -0.152 C13  829 16 
829 O15    O15  O 0 1 N N N 24.857 -34.034 0.032  3.573  -0.995 -1.822 O15  829 17 
829 "C2'"  C2*  C 0 1 N N R 21.291 -36.556 2.531  -2.395 -1.969 0.121  C2*  829 18 
829 "O2'"  O2*  O 0 1 N N N 21.019 -37.827 3.153  -3.138 -2.811 1.005  O2*  829 19 
829 "C3'"  C3*  C 0 1 N N S 22.749 -36.566 2.080  -1.041 -2.621 -0.237 C3*  829 20 
829 "O3'"  O3*  O 0 1 N N N 23.239 -37.849 1.650  -0.905 -3.884 0.416  O3*  829 21 
829 "C4'"  C4*  C 0 1 N N R 23.464 -36.082 3.331  0.009  -1.621 0.296  C4*  829 22 
829 "O4'"  O4*  O 0 1 N N N 22.543 -35.153 3.964  -0.678 -0.351 0.338  O4*  829 23 
829 "C5'"  C5*  C 0 1 N N N 24.940 -35.663 3.081  1.206  -1.547 -0.655 C5*  829 24 
829 "N5'"  N5*  N 0 1 N N N 25.253 -34.587 2.131  2.239  -0.687 -0.073 N5*  829 25 
829 HN4    HN4  H 0 1 N N N 18.576 -29.977 1.923  -5.562 3.647  -1.584 HN4  829 26 
829 HN4A   HN4A H 0 0 N N N 19.760 -30.051 0.660  -6.053 3.830  0.012  HN4A 829 27 
829 H5     H5   H 0 1 N N N 21.311 -31.901 0.475  -5.156 2.490  1.832  H5   829 28 
829 H6     H6   H 0 1 N N N 22.074 -34.044 1.417  -3.609 0.699  2.460  H6   829 29 
829 H08    H08  H 0 1 N N N 26.671 -37.158 1.511  3.328  0.862  1.639  H08  829 30 
829 H09    H09  H 0 1 N N N 28.565 -38.316 0.398  5.107  2.295  2.557  H09  829 31 
829 "H1'"  H1*  H 0 1 N N N 20.458 -35.664 4.297  -1.987 -0.790 1.908  H1*  829 32 
829 H11    H11  H 0 1 N N N 28.965 -35.151 -2.352 7.520  1.632  -0.751 H11  829 33 
829 H12    H12  H 0 1 N N N 27.078 -33.939 -1.308 5.826  0.176  -1.787 H12  829 34 
829 "H2'"  H2*  H 0 1 N N N 20.562 -36.425 1.717  -2.971 -1.762 -0.781 H2*  829 35 
829 "HO2'" HO2* H 0 0 N N N 21.096 -38.519 2.507  -3.409 -3.651 0.613  HO2* 829 36 
829 "H3'"  H3*  H 0 1 N N N 22.907 -35.947 1.184  -0.945 -2.736 -1.316 H3*  829 37 
829 "HO3'" HO3* H 0 0 N N N 24.148 -37.769 1.387  -1.577 -4.532 0.163  HO3* 829 38 
829 "H4'"  H4*  H 0 1 N N N 23.671 -36.874 4.066  0.335  -1.909 1.296  H4*  829 39 
829 "H5'"  H5*  H 0 1 N N N 25.331 -35.332 4.054  1.610  -2.547 -0.808 H5*  829 40 
829 "H5'A" H5*A H 0 0 N N N 25.451 -36.561 2.702  0.885  -1.134 -1.611 H5*A 829 41 
829 "HN5'" HN5* H 0 0 N N N 25.239 -33.663 2.514  2.094  -0.270 0.790  HN5* 829 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
829 C6    N1     SING N N 1  
829 N1    "C1'"  SING N N 2  
829 N1    C2     SING N N 3  
829 N3    C2     SING N N 4  
829 C2    O2     DOUB N N 5  
829 C4    N3     DOUB N N 6  
829 C5    C4     SING N N 7  
829 N4    C4     SING N N 8  
829 N4    HN4    SING N N 9  
829 N4    HN4A   SING N N 10 
829 C5    C6     DOUB N N 11 
829 C5    H5     SING N N 12 
829 C6    H6     SING N N 13 
829 O15   C07    DOUB N N 14 
829 C13   C07    SING N N 15 
829 C07   "N5'"  SING N N 16 
829 C09   C08    DOUB Y N 17 
829 C13   C08    SING Y N 18 
829 C08   H08    SING N N 19 
829 N10   C09    SING Y N 20 
829 C09   H09    SING N N 21 
829 "C2'" "C1'"  SING N N 22 
829 "C1'" "O4'"  SING N N 23 
829 "C1'" "H1'"  SING N N 24 
829 C11   N10    DOUB Y N 25 
829 C11   C12    SING Y N 26 
829 C11   H11    SING N N 27 
829 C12   C13    DOUB Y N 28 
829 C12   H12    SING N N 29 
829 "C3'" "C2'"  SING N N 30 
829 "C2'" "O2'"  SING N N 31 
829 "C2'" "H2'"  SING N N 32 
829 "O2'" "HO2'" SING N N 33 
829 "O3'" "C3'"  SING N N 34 
829 "C3'" "C4'"  SING N N 35 
829 "C3'" "H3'"  SING N N 36 
829 "O3'" "HO3'" SING N N 37 
829 "C5'" "C4'"  SING N N 38 
829 "C4'" "O4'"  SING N N 39 
829 "C4'" "H4'"  SING N N 40 
829 "N5'" "C5'"  SING N N 41 
829 "C5'" "H5'"  SING N N 42 
829 "C5'" "H5'A" SING N N 43 
829 "N5'" "HN5'" SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
829 SMILES           ACDLabs              11.02 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)CNC(=O)c3ccncc3"                                                                                                                            
829 SMILES_CANONICAL CACTVS               3.352 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CNC(=O)c3ccncc3)[C@@H](O)[C@H]2O"                                                                                                        
829 SMILES           CACTVS               3.352 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CNC(=O)c3ccncc3)[CH](O)[CH]2O"                                                                                                              
829 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cnccc1C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O"                                                                                                        
829 SMILES           "OpenEye OEToolkits" 1.7.0 "c1cnccc1C(=O)NCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O"                                                                                                                          
829 InChI            InChI                1.03  "InChI=1S/C15H17N5O5/c16-10-3-6-20(15(24)19-10)14-12(22)11(21)9(25-14)7-18-13(23)8-1-4-17-5-2-8/h1-6,9,11-12,14,21-22H,7H2,(H,18,23)(H2,16,19,24)/t9-,11-,12-,14-/m1/s1" 
829 InChIKey         InChI                1.03  XQXWUTWGJVGDNS-XIDUGBJDSA-N                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
829 "SYSTEMATIC NAME" ACDLabs              11.02 "5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine"                                                           
829 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]pyridine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
829 "Create component"     2009-10-28 RCSB 
829 "Modify aromatic_flag" 2011-06-04 RCSB 
829 "Modify descriptor"    2011-06-04 RCSB 
# 
